BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0938600 Os01g0938600|AK073733
         (513 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0938600  Conserved hypothetical protein                      808   0.0  
Os05g0373500  Conserved hypothetical protein                      276   2e-74
Os09g0454200  Conserved hypothetical protein                      191   1e-48
Os02g0768000  Conserved hypothetical protein                      137   2e-32

>Os01g0938600 Conserved hypothetical protein
          Length = 513

 Score =  808 bits (2088), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/513 (80%), Positives = 413/513 (80%)

Query: 1   MGKEAVGEGQHQQQRPPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKC 60
           MGKEAVGEGQHQQQRPPD                                       LKC
Sbjct: 1   MGKEAVGEGQHQQQRPPDGAGGGGGGRGGRGGGGGRGGSGRLGWWWCCCCGVGGVVRLKC 60

Query: 61  XXXXXXXXXXXXXXXFWLPPFARRGRGSEGPDPGAGFDADIVASFRLHKMVPELNGNASK 120
                          FWLPPFARRGRGSEGPDPGAGFDADIVASFRLHKMVPELNGNASK
Sbjct: 61  VAALVLGVAVLLSAVFWLPPFARRGRGSEGPDPGAGFDADIVASFRLHKMVPELNGNASK 120

Query: 121 LELDIYEEIGIPNSTVVVNSLQLVGSNWTNVIFSIVPYPKNLTLSSTGLSILRSYFMSFV 180
           LELDIYEEIGIPNSTVVVNSLQLVGSNWTNVIFSIVPYPKNLTLSSTGLSILRSYFMSFV
Sbjct: 121 LELDIYEEIGIPNSTVVVNSLQLVGSNWTNVIFSIVPYPKNLTLSSTGLSILRSYFMSFV 180

Query: 181 VRQSTLQLTESLFGNSSSFEVLKFPGGITIIPPQTAFLPQKPHATFNFTLNFPIYKVQDR 240
           VRQSTLQLTESLFGNSSSFEVLKFPGGITIIPPQTAFLPQKPHATFNFTLNFPIYKVQDR
Sbjct: 181 VRQSTLQLTESLFGNSSSFEVLKFPGGITIIPPQTAFLPQKPHATFNFTLNFPIYKVQDR 240

Query: 241 IDELKDQMKTGLLLNSYENLYIKLANLNGSTVDPPTIVETSIFLEVGNHQPSVPRMKQLA 300
           IDELKDQMKTGLLLNSYENLYIKLANLNGSTVDPPTIVETSIFLEVGNHQPSVPRMKQLA
Sbjct: 241 IDELKDQMKTGLLLNSYENLYIKLANLNGSTVDPPTIVETSIFLEVGNHQPSVPRMKQLA 300

Query: 301 QTITNSSSGNLGLNHTVFGRVKQIXXXXXXXXXXXXXXXXEAPSPAPMXXXXXXXXXXXX 360
           QTITNSSSGNLGLNHTVFGRVKQI                EAPSPAPM            
Sbjct: 301 QTITNSSSGNLGLNHTVFGRVKQISLSSYLRHSLHSGGGSEAPSPAPMHHHGHHHHHHHH 360

Query: 361 XXXEDSRHSAPAQAPVHYPVHEPRYGAPPPSRCPYGTDKPKNKAHVMPAPEPTANGHHFA 420
              EDSRHSAPAQAPVHYPVHEPRYGAPPPSRCPYGTDKPKNKAHVMPAPEPTANGHHFA
Sbjct: 361 HGHEDSRHSAPAQAPVHYPVHEPRYGAPPPSRCPYGTDKPKNKAHVMPAPEPTANGHHFA 420

Query: 421 SPVALPPHSLSPRNPNVHSRXXXXXXXXXXXXXXXTVSFAHAHPPSEHTSRRDPAGLSAL 480
           SPVALPPHSLSPRNPNVHSR               TVSFAHAHPPSEHTSRRDPAGLSAL
Sbjct: 421 SPVALPPHSLSPRNPNVHSRSPIPSPPVLPEPPLPTVSFAHAHPPSEHTSRRDPAGLSAL 480

Query: 481 APAPHSSNATRSLWRSIHWANIVPLVCILMSLL 513
           APAPHSSNATRSLWRSIHWANIVPLVCILMSLL
Sbjct: 481 APAPHSSNATRSLWRSIHWANIVPLVCILMSLL 513



>Os05g0373500 Conserved hypothetical protein
          Length = 225

 Score =  276 bits (707), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 142/191 (74%), Positives = 157/191 (82%), Gaps = 1/191 (0%)

Query: 96  GFDADIVASFRLHKMVPELNGNASKLELDIYEEIGIPNSTVVVNSLQLVGS-NWTNVIFS 154
            F ADIVASF L K V EL+G+ SKLE DIY EIGIPNSTV VN LQ +G+ NWTNVIFS
Sbjct: 31  AFAADIVASFMLQKTVSELSGSTSKLEFDIYGEIGIPNSTVAVNFLQPIGAPNWTNVIFS 90

Query: 155 IVPYPKNLTLSSTGLSILRSYFMSFVVRQSTLQLTESLFGNSSSFEVLKFPGGITIIPPQ 214
           IVPYPK  ++SS  LSILR+ FMS VV QSTL LTESLFG++S FEVLKFPGGITIIPPQ
Sbjct: 91  IVPYPKYSSISSMYLSILRASFMSLVVEQSTLHLTESLFGDTSLFEVLKFPGGITIIPPQ 150

Query: 215 TAFLPQKPHATFNFTLNFPIYKVQDRIDELKDQMKTGLLLNSYENLYIKLANLNGSTVDP 274
            AFL QKP+A+FNFTLNFPIYKVQ R++ELKDQMK GL L+ YENLYIKL N  GSTV P
Sbjct: 151 AAFLLQKPYASFNFTLNFPIYKVQGRMNELKDQMKAGLQLDPYENLYIKLTNSEGSTVRP 210

Query: 275 PTIVETSIFLE 285
           PTIV+ SI LE
Sbjct: 211 PTIVQASIVLE 221



>Os09g0454200 Conserved hypothetical protein
          Length = 489

 Score =  191 bits (484), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 111/242 (45%), Positives = 150/242 (61%), Gaps = 6/242 (2%)

Query: 84  RGRGSEGPDPGAGFDADIVASFRLHKMVPELNGNASKLELDIYEEIGIPNSTVVVNSLQL 143
           RG G    DP     A+I   F L K V  L  +  KL  DI+EEIGIPNS V + S++ 
Sbjct: 65  RGHGFLSDDPVV-LGAEIQVGFTLEKPVSFLAAHMDKLGGDIFEEIGIPNSKVSIVSMRS 123

Query: 144 VGSNW-TNVIFSIVPYPKNLTLSSTGLSILRSYFMSFVVRQSTLQLTESLFGNSSSFEVL 202
           + S + TNV+FS++P PK  ++S   LS+LRS  ++ ++ Q  L LTE LFG+ SS E+L
Sbjct: 124 LTSKYSTNVVFSVLPSPKEASISLPALSVLRSSLIAMMLNQVNLSLTEPLFGHPSSVELL 183

Query: 203 KFPGGITIIPPQTAFLPQKPHATFNFTLNFPIYKVQDRIDELKDQMKTGLLLNSYENLYI 262
           +FPGGIT+IP Q+  +   P   FNF LN  IY++   I ELKDQ+K GL L SYE +Y+
Sbjct: 184 RFPGGITVIPEQSGSVWADP--LFNFVLNNSIYQILGNITELKDQLKLGLNLRSYEKVYL 241

Query: 263 KLANLNGSTVDPPTIVETSIFLEVGNHQPSVPRMKQLAQTITNSSSGNLGLNHTVFGRVK 322
           +  N  GS+VD P  +E S+        P   R+KQLAQ I   ++ NLGLNH+VFG+VK
Sbjct: 242 QFRNEIGSSVDAPATIEASVLDGSSILLPY--RLKQLAQLIKEPNARNLGLNHSVFGKVK 299

Query: 323 QI 324
            +
Sbjct: 300 GV 301



>Os02g0768000 Conserved hypothetical protein
          Length = 405

 Score =  137 bits (345), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 87/233 (37%), Positives = 129/233 (55%), Gaps = 4/233 (1%)

Query: 92  DPGAGFDADIVASFRLHKMVPELNGNASKLELDIYEEIGIPNSTVVVNSLQLVGSNWTNV 151
           DPG     +I ASF L K   +L  +  +L+ DIY EIGIPN+TV V+       + T V
Sbjct: 72  DPGV-LPGEIQASFFLLKKRQQLIPHVRRLQKDIYREIGIPNTTVSVSMHTSKYKDSTYV 130

Query: 152 IFSIVPYPKNLTLSSTGLSILRSYFMSFVVRQSTLQLTESLFGNSSSFEVLKFPGGITII 211
            F I+P P+N ++S+  +  LR   +   + QS L LT S+FG+    E+L FPGGIT+ 
Sbjct: 131 KFGILPNPRNSSISAQSIIALRKNLIQLTLEQSNLSLTSSVFGDPHCLEILGFPGGITVP 190

Query: 212 PPQTAFLPQKPHATFNFTLNFPIYKVQDRIDELKDQMKTGLLLNSYENLYIKLANLNGST 271
           PP    +   P A FN TLN  I +++  + EL+ +++  L L  YE+L +++ N NGST
Sbjct: 191 PPPDGNI--CPTALFNVTLNMTIQQLRVHLKELESELRIILQLTPYEDLIVEITNENGST 248

Query: 272 VDPPTIVETSIFLEVGNHQPSVPRMKQLAQTITNSSSGNLGLNHTVFGRVKQI 324
           ++ P  V   I     ++     R+KQLAQ I      NL LN  +FG ++ +
Sbjct: 249 INLPVTVHILIAPNYPSNYLETYRLKQLAQIIIKLIPKNLDLN-PIFGMIENL 300



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.133    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,772,927
Number of extensions: 716089
Number of successful extensions: 2817
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 2811
Number of HSP's successfully gapped: 4
Length of query: 513
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 408
Effective length of database: 11,553,331
Effective search space: 4713759048
Effective search space used: 4713759048
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 158 (65.5 bits)