BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0935300 Os01g0935300|AK064133
(300 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0935300 Cullin family protein 631 0.0
Os01g0369000 Similar to Cullin-1 152 2e-37
Os05g0149600 Similar to Cullin-1 124 6e-29
Os01g0369200 Similar to Cullin-1 124 1e-28
AK110300 89 5e-18
Os05g0193900 82 5e-16
Os12g0236250 81 1e-15
>Os01g0935300 Cullin family protein
Length = 300
Score = 631 bits (1627), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 300/300 (100%), Positives = 300/300 (100%)
Query: 1 MNEHLRFEDGWKILEQGIVKCSKLLEDCPGGRPTVNEYMNYYDCAYRMAVQKDQYCQEMY 60
MNEHLRFEDGWKILEQGIVKCSKLLEDCPGGRPTVNEYMNYYDCAYRMAVQKDQYCQEMY
Sbjct: 1 MNEHLRFEDGWKILEQGIVKCSKLLEDCPGGRPTVNEYMNYYDCAYRMAVQKDQYCQEMY 60
Query: 61 NSYKATHESCVCAMVLPHLMHKQGDLFWRELVKMWSNYCAMIRFTTGFLAYLDRCFVTHK 120
NSYKATHESCVCAMVLPHLMHKQGDLFWRELVKMWSNYCAMIRFTTGFLAYLDRCFVTHK
Sbjct: 61 NSYKATHESCVCAMVLPHLMHKQGDLFWRELVKMWSNYCAMIRFTTGFLAYLDRCFVTHK 120
Query: 121 KLPSLEDAAATSFFSPVFSYFNNEISDVLLTLIRQERDGCNVDMDLLMGIMRGICRSEVK 180
KLPSLEDAAATSFFSPVFSYFNNEISDVLLTLIRQERDGCNVDMDLLMGIMRGICRSEVK
Sbjct: 121 KLPSLEDAAATSFFSPVFSYFNNEISDVLLTLIRQERDGCNVDMDLLMGIMRGICRSEVK 180
Query: 181 TKLKSAVIQDTYLYYSRKSYEWIVQYPLQDYLAKVQETVQKEMKRLIHYLCISEEEGSGL 240
TKLKSAVIQDTYLYYSRKSYEWIVQYPLQDYLAKVQETVQKEMKRLIHYLCISEEEGSGL
Sbjct: 181 TKLKSAVIQDTYLYYSRKSYEWIVQYPLQDYLAKVQETVQKEMKRLIHYLCISEEEGSGL 240
Query: 241 CLKAVSAPLMQAYENYTKEKHIGGQVLLQTYKTVEDDLLDRCSRLTIDNGLDNNSFSHME 300
CLKAVSAPLMQAYENYTKEKHIGGQVLLQTYKTVEDDLLDRCSRLTIDNGLDNNSFSHME
Sbjct: 241 CLKAVSAPLMQAYENYTKEKHIGGQVLLQTYKTVEDDLLDRCSRLTIDNGLDNNSFSHME 300
>Os01g0369000 Similar to Cullin-1
Length = 744
Score = 152 bits (385), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 92/288 (31%), Positives = 150/288 (52%), Gaps = 18/288 (6%)
Query: 7 FEDGWKILEQGIVKCSKLLEDCPGGRPTVNEYMNYYDCAYRMAVQKD--QYCQEMYNSYK 64
E GW+ +++GI K +LE P + + +YM Y Y M QK Y Q++Y Y+
Sbjct: 11 LEQGWEFMQKGITKLKNILEGKPEPQFSSEDYMMLYTTIYNMCTQKPPHDYSQQLYEKYR 70
Query: 65 ATHESCVCAMVLPHLMHKQGDLFWRELVKMWSNYCAMIRFTTGFLAYLDRCFVTHKKLPS 124
+ E + +MVLP L K + RELVK WSN+ M+R+ + F YLDR F++ + LP
Sbjct: 71 ESFEEYITSMVLPSLREKHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFISRRSLPQ 130
Query: 125 LEDAAATSFFSPVFSYFNNEISDVLLTLIRQERDGCNVDMDLLMGIMR-----GICRSE- 178
L + + F V+ ++ +++LI QER+G +D LL ++ G+ +
Sbjct: 131 LSEVGLSCFRDLVYQEIKGKVKSAVISLIDQEREGEQIDRALLKNVLDIFVEIGLTSMDY 190
Query: 179 VKTKLKSAVIQDTYLYYSRKSYEWIVQYPLQDYLAKVQETVQKEMKRLIHYLCISEEEGS 238
+ + +++DT YYS K+ WI++ DY+ K +E +++E +R+ HYL S E+
Sbjct: 191 YENDFEDFLLKDTADYYSIKAQTWILEDSCPDYMLKAEECLKREKERVAHYLHSSSEQK- 249
Query: 239 GLCLKAVSAPLMQAYENYTKEK-HIGGQVLLQTYKTVEDDLLDRCSRL 285
L+ V L+ Y + EK H G LL+ DD +D SR+
Sbjct: 250 --LLEKVQHELLTQYASQLLEKEHSGCHALLR------DDKVDDLSRM 289
>Os05g0149600 Similar to Cullin-1
Length = 742
Score = 124 bits (312), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 88/258 (34%), Positives = 135/258 (52%), Gaps = 17/258 (6%)
Query: 46 YRMAVQKD--QYCQEMYNSYKATHESCVCAMVLPHLMHKQGDLFWRELVKMWSNYCAMIR 103
Y M QK Y Q++Y+ Y+ + E + +MVLP L K + RELVK WSN+ M+R
Sbjct: 48 YNMCTQKPPHDYSQQLYDKYRESFEEYITSMVLPSLRDKHDEFMLRELVKRWSNHKIMVR 107
Query: 104 FTTGFLAYLDRCFVTHKKLPSLEDAAATSFFSPVFSYFNNEISDVLLTLIRQERDGCNVD 163
+ + F YLDR F++ + L LE T F ++ ++ ++ LI +ER+G +D
Sbjct: 108 WLSRFFFYLDRYFISRRSLIPLEQVGLTCFRDLIYQEIKGQVKGAVIALIDKEREGEQID 167
Query: 164 MDLL---MGIMRGICRSEV---KTKLKSAVIQDTYLYYSRKSYEWIVQYPLQDYLAKVQE 217
LL +GI I + + + +++DT YYS K+ WI++ DY+ K +E
Sbjct: 168 RALLKNVLGIFVEIGLGSMECYENDFEDFLLKDTTDYYSLKAQSWILEDSCPDYMIKAEE 227
Query: 218 TVQKEMKRLIHYLCISEEEGSGLCLKAVSAPLMQAYENYTKEK-HIGGQVLLQTYKTVED 276
++KE +R+ HYL IS E+ L+ V L+ Y EK H G LL+ K E+
Sbjct: 228 CLKKEKERVGHYLHISSEQK---LLEKVQNELLAQYATPLLEKEHSGCFALLRDDK--EE 282
Query: 277 DLLDRCSRL--TIDNGLD 292
D L R RL I+ GL+
Sbjct: 283 D-LSRMYRLFSKINRGLE 299
>Os01g0369200 Similar to Cullin-1
Length = 746
Score = 124 bits (310), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 92/295 (31%), Positives = 149/295 (50%), Gaps = 15/295 (5%)
Query: 7 FEDGWKILEQGIVKCSKLLEDCPGGRPTVNEYMNYYDCAYRMAVQK--DQYCQEMYNSYK 64
EDGW+ + G+ K +L+ +EYM+ Y Y M QK + Y Q +Y+ YK
Sbjct: 12 LEDGWRDVLAGVAKLKCILDGSNVVHFVPDEYMHLYTTVYNMCTQKPPNDYSQVLYDRYK 71
Query: 65 ATHESCVCAMVLPHLMHKQGDLFWRELVKMWSNYCAMIRFTTGFLAYLDRCFVTHKKLPS 124
+ + ++VLP L K G RE+V+ W + M+R+ F YLDR +VT + L S
Sbjct: 72 QALDDHIESVVLPSLNEKHGVFLLREIVQRWEKHKLMVRWLRRFFDYLDRYYVTRRSLDS 131
Query: 125 LEDAAATSFFSPVFSYFNNEISDVLLTLIRQERDGCNVDMDLL---MGIMRGICRSEVK- 180
L+D +SF VF + ++ +++ +I ER+G +D LL + I I S++
Sbjct: 132 LKDLGWSSFRDLVFDKLKSTVATIMIGMIDDEREGNLIDRPLLKNALDIYVEIGDSQLNY 191
Query: 181 --TKLKSAVIQDTYLYYSRKSYEWIVQYPLQDYLAKVQETVQKEMKRLIHYLCISEEEGS 238
+ + + T YYS+K+ WI++ +Y+ K +E +QKE R+ +YL + E
Sbjct: 192 YSDDFEQSFLNGTTDYYSKKAQTWILENSCPEYMLKAEECLQKEKDRVANYLHSTTE--P 249
Query: 239 GLCLKAVSAPLMQAYENYTKEKHIGGQVLLQTYKTVEDDLLDRCSRL--TIDNGL 291
L A+ + + E +++ G +VLL KT ED L R RL I +GL
Sbjct: 250 KLFAAALFELIDRRAEEILNKENSGCKVLLCDEKT-ED--LARMFRLFSRITDGL 301
>AK110300
Length = 809
Score = 88.6 bits (218), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 131/285 (45%), Gaps = 17/285 (5%)
Query: 7 FEDGW-KILEQGIVKCSKLLEDCPGGRPTV---NEYMNYYDCAYRMAVQKDQYC--QEMY 60
E+GW KI G+ + ++ EYM Y Y M +QK +C ++Y
Sbjct: 26 LEEGWAKIYRDGVQRVFHMVAGRDAAAGRAFNNREYMALYTTIYTMCIQKAPHCWTAQLY 85
Query: 61 NSYKATHESCVCAMVLPHLMHKQGDLFWRELVKMWSNYCAMIRFTTGFLAYLDRCFVTHK 120
+ ++ + VLP + K+G+ +ELV+ W+N+ + ++ F YL+R +V
Sbjct: 86 DRHELALVEYLDGTVLPAIEQKKGEFLLKELVQRWANHKLIKQWMCDFFRYLNRFYVKRH 145
Query: 121 KLPSLEDAAATSFFSPVFSYFNNEISDVLLTLIRQERDG-CNVDMDLL---MGIMRGICR 176
LE+ + F + V+ + +L LIR++RDG VD DLL + I +
Sbjct: 146 NKKPLEEVSILRFKTNVYKKVKGKACTAVLELIRRDRDGEQGVDRDLLRDAIAIFVDMGM 205
Query: 177 SEVKT---KLKSAVIQDTYLYYSRKSYEWIVQYPLQDYLAKVQETVQKEMKRLIHYLCIS 233
KT ++A I + YYSR+S W+ +YL K + + +E +R+ YL
Sbjct: 206 GNGKTYQYDFEAAFIDHSANYYSRQSALWLSGDSCPEYLRKAEARILQEKRRVAEYLHSG 265
Query: 234 EEEGSGLCLKAVSAPLMQAYENYTKEKHIGGQVLLQTYKTVEDDL 278
+E L L++ +++ G +V+L+T+ E DL
Sbjct: 266 TDE--PLMETLYQTLLIRHQSELLDKENTGLRVMLKTH--AEQDL 306
>Os05g0193900
Length = 406
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 70/282 (24%), Positives = 121/282 (42%), Gaps = 43/282 (15%)
Query: 5 LRFEDGWKILEQGIVKCSKLLEDCPGGRPTVNEYMNYYDCAYRMAVQKDQ--YCQEMYNS 62
L E+GW+ + G+ K + D G + +EYM+ Y Y M QK Y +E+Y+
Sbjct: 52 LDLEEGWRDVLAGVAKLKSIHTDSDFGGFSPDEYMHIYTLVYYMCTQKGHKDYPKELYHL 111
Query: 63 YKATHESCVCAMVLPHLMHKQGDLFWRELVKMWSNYCAMIRFTTGFLAYLDRCFVTHKKL 122
K + + ++VLP L K G+ E+++ W + M+R+ F YLDR +T K L
Sbjct: 112 CKQALDDHLDSIVLPSLNEKHGNFLLAEMLQSWEKHKLMVRWLRRFFDYLDRVSITWKSL 171
Query: 123 PSLEDAAATSFFSPVFSYFNNEISDVLLTLIRQERDGCNVDMDLLMGIMRGICRSEVKTK 182
SLE F +I ER+G +D LL ++ +C ++
Sbjct: 172 HSLEHMGWIGFRD----------------MINDERNGLLIDRALLKNVIH-MCNEFGDSE 214
Query: 183 LKSAVIQDTYLYYSRKSYEWIVQYPLQDYLAKVQETVQKEMKRLIHYLCISEEEGS--GL 240
L S YP +Y+ K +E +QKE +++ + ++ S G+
Sbjct: 215 LNS--------------------YP--EYILKAEECLQKEKEQVYSHSTTEPKDTSDKGM 252
Query: 241 CLKAVSAPLMQAYENYTKEKHIGGQVLLQTYKTVEDDLLDRC 282
L ++ ++ E +G + L + V D++L R
Sbjct: 253 ALVKHGTDTAKSRKDKKNEVMVGFPINLISGSRVVDEILGRV 294
>Os12g0236250
Length = 237
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 102/237 (43%), Gaps = 38/237 (16%)
Query: 7 FEDGWKILEQGIVKCSKLLEDCPGGRPTVNEYMNYYDCAYRMAVQKDQYCQEMYNSYKAT 66
FE+GW++L + K +++ + ++ M Y
Sbjct: 7 FEEGWRLLATSLAKQRSIIDGSMSKSSSEDDNMQLY------------------------ 42
Query: 67 HESCVCAMVLPHLMHKQGDLFWRELVKMWSNYCAMIRFTTGFLAYLDRCFVTHKKLPSLE 126
MVLP + G+ + LV W N+ ++ T F YLDR ++ K L LE
Sbjct: 43 ------MMVLPSMRQINGETLLKGLVDRWRNHKKIVISETRFFFYLDRYYILRKSLVPLE 96
Query: 127 DAAATSFFSPVFSYFNNEISDVLLTLIRQERDGCNVDMDLLMGIMR-----GICRSEVKT 181
SF V+S ++I+ ++ +I ERDG +D DLL ++ G+ +
Sbjct: 97 QLNLCSFRDQVYSELKDKITRTVVDMINDERDGKVIDRDLLKDVLDVYVQIGLGMECYEV 156
Query: 182 KLKSAVIQDTYLYYSRKSYEWIVQYPLQD---YLAKVQETVQKEMKRLIHYLCISEE 235
++A + T YYS K+ I++ D Y+ K E +Q E++R+ HYL S E
Sbjct: 157 DFENAFRESTRNYYSNKAQTSILECNGADSPEYMLKAVECLQAELERVSHYLHSSTE 213
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.136 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,310,902
Number of extensions: 414774
Number of successful extensions: 874
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 866
Number of HSP's successfully gapped: 7
Length of query: 300
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 200
Effective length of database: 11,814,401
Effective search space: 2362880200
Effective search space used: 2362880200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 156 (64.7 bits)