BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0934000 Os01g0934000|AK072525
(457 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0934000 WD40-like domain containing protein 680 0.0
Os01g0168500 WD40-like domain containing protein 416 e-116
Os05g0169200 WD40-like domain containing protein 327 1e-89
Os07g0670500 138 8e-33
Os02g0791800 WD-40 repeat containing protein 124 1e-28
AK108828 88 1e-17
Os07g0670400 86 4e-17
>Os01g0934000 WD40-like domain containing protein
Length = 457
Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/365 (90%), Positives = 332/365 (90%)
Query: 93 HPAAKDLLHISFNQDYGCFAAGTKSGFRIYNCDPFREIFRRDLXXXXXXXXXXXXXXXXX 152
HPAAKDLLHISFNQDYGCFAAGTKSGFRIYNCDPFREIFRRDL
Sbjct: 93 HPAAKDLLHISFNQDYGCFAAGTKSGFRIYNCDPFREIFRRDLGAAGDNGVGGGGGGIGV 152
Query: 153 XEMLFRCNILALVGGGDAPHYPPNKVMIWDDHQSRCIGELSFRSPXXXXXXXXXXXXXXX 212
EMLFRCNILALVGGGDAPHYPPNKVMIWDDHQSRCIGELSFRSP
Sbjct: 153 VEMLFRCNILALVGGGDAPHYPPNKVMIWDDHQSRCIGELSFRSPVRGVRLRRDRIIVVL 212
Query: 213 ENKIFVYNFADLKLVHQIETAPNPKGLCAVSQQPGSIVLVCPGAQKGQVRVEHYGARKTK 272
ENKIFVYNFADLKLVHQIETAPNPKGLCAVSQQPGSIVLVCPGAQKGQVRVEHYGARKTK
Sbjct: 213 ENKIFVYNFADLKLVHQIETAPNPKGLCAVSQQPGSIVLVCPGAQKGQVRVEHYGARKTK 272
Query: 273 FINAHTSRVACFALSQDGRLIATASTKGTLVRIYNAAEGNLLQEVRRGADRAEIYSLAFS 332
FINAHTSRVACFALSQDGRLIATASTKGTLVRIYNAAEGNLLQEVRRGADRAEIYSLAFS
Sbjct: 273 FINAHTSRVACFALSQDGRLIATASTKGTLVRIYNAAEGNLLQEVRRGADRAEIYSLAFS 332
Query: 333 NNLQYLAVSSDKGTIHVFNLKINVGLTTNDKPLPAPDPDVPHISPSLSFIKGVLPKYFHS 392
NNLQYLAVSSDKGTIHVFNLKINVGLTTNDKPLPAPDPDVPHISPSLSFIKGVLPKYFHS
Sbjct: 333 NNLQYLAVSSDKGTIHVFNLKINVGLTTNDKPLPAPDPDVPHISPSLSFIKGVLPKYFHS 392
Query: 393 EWSVAQFRLHEGEQYIVAFGHEKNTVAVVGMDGSFYRCQFDPVNGGEMLQLECYNFLKPS 452
EWSVAQFRLHEGEQYIVAFGHEKNTVAVVGMDGSFYRCQFDPVNGGEMLQLECYNFLKPS
Sbjct: 393 EWSVAQFRLHEGEQYIVAFGHEKNTVAVVGMDGSFYRCQFDPVNGGEMLQLECYNFLKPS 452
Query: 453 SDQPQ 457
SDQPQ
Sbjct: 453 SDQPQ 457
>Os01g0168500 WD40-like domain containing protein
Length = 417
Score = 416 bits (1070), Expect = e-116, Method: Compositional matrix adjust.
Identities = 206/371 (55%), Positives = 253/371 (68%), Gaps = 30/371 (8%)
Query: 99 LLHISFNQDYGCFAAGTKSGFRIYNCDPFREIFRRDLXXXXXXXXXXXXXXXXXXEMLFR 158
LL +S+NQD+GCFAAGT +GFRI+NCDPF+E FRRDL EMLFR
Sbjct: 47 LLSVSWNQDFGCFAAGTSNGFRIFNCDPFKETFRRDLKSGGFGIV----------EMLFR 96
Query: 159 CNILALVGGGDAPHYPPNKVMIWDDHQSRCIGELSFRSPXXXXXXXXXXXXXXXENKIFV 218
CNILALVGGG HYPPNKVMIWDDH+S CIGE +FRS E KI+V
Sbjct: 97 CNILALVGGGSNAHYPPNKVMIWDDHRSHCIGEFAFRSDVRAVKLGKDYIVIVLERKIYV 156
Query: 219 YNFADLKLVHQIETAPNPKGLCAVSQQPGSIVLVCPGAQKGQVRVEHYGARKTKFINAHT 278
YNF DLKL+HQIET NPKGLC +S + VL CPG +G VRVEH+G + T+ I+AH
Sbjct: 157 YNFTDLKLLHQIETQSNPKGLCCLSHHSNTSVLACPGVHQGHVRVEHFGLKVTRMISAHD 216
Query: 279 SRVACFALSQDGRLIATASTKGTLVRIYNAAEGNLLQEVRRGADRAEIYSLAFSNNLQYL 338
S ++C AL+ DG L+ATAS KGTL+RI+N +G LQEVRRG D+A+IYS+A S N+Q+L
Sbjct: 217 SHISCMALTMDGLLLATASMKGTLIRIFNTMDGTRLQEVRRGLDKADIYSIALSPNVQWL 276
Query: 339 AVSSDKGTIHVFNLKINVG---LTTNDKPLPAP-----------DPDV-----PHISPSL 379
AVSSDKGT+H+F+L++ V + + L P DP + + S SL
Sbjct: 277 AVSSDKGTVHIFSLRVRVAGEDASNEQRSLEGPRMDHQNSSSSIDPLIQTNTGSNASSSL 336
Query: 380 SFIKGVLPKYFHSEWSVAQFRLHEGEQYIVAFGHEKNTVAVVGMDGSFYRCQFDPVNGGE 439
SF+KG+LPKYF SEWS AQF L E +YIVAFG +NTV +VG+DGSFYRC FD VNGG+
Sbjct: 337 SFMKGILPKYFSSEWSFAQFHLPEVTRYIVAFG-AQNTVMMVGLDGSFYRCSFDQVNGGQ 395
Query: 440 MLQLECYNFLK 450
MLQ E + F+K
Sbjct: 396 MLQKEYFRFIK 406
>Os05g0169200 WD40-like domain containing protein
Length = 382
Score = 327 bits (837), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 168/374 (44%), Positives = 223/374 (59%), Gaps = 29/374 (7%)
Query: 98 DLLHISFNQDYGCFAAGTKSGFRIYNCDPFREIFRRDLXXXXXXXXXXXXXXXXXXEMLF 157
+LL +S+NQD CF A T +GFR+++C PF E RR EMLF
Sbjct: 16 ELLSVSWNQDNSCFIAATTNGFRVFSCKPFHETMRR---------MFGPNGGIGIAEMLF 66
Query: 158 RCNILALVGGGDAPHYPPNKVMIWDDHQSRCIGELSFRSPXXXXXXXXXXXXXXXENKIF 217
R +I L G +PP + +WDD+ R I + +F S E I
Sbjct: 67 RTSIFGLAGAESNTEFPPTMLQLWDDYNERRIHKYNFTSEIRAVRLSKDYFVVVLEKTIN 126
Query: 218 VYNFADLKLVHQIETAPNPKGLCAVSQQPGSIVLVCPGAQKGQVRVEHYGARKTKFINAH 277
VY F DL+L +Q T NP GLC +S + V CPG KGQV +EH+G ++T+FI AH
Sbjct: 127 VYRFKDLRLFYQARTVSNPNGLCCLSHHANASVFACPGTSKGQVLIEHFGLKETRFIAAH 186
Query: 278 TSRVACFALSQDGRLIATASTKGTLVRIYNAAEGNLLQEVRRGADRAEIYSLAFSNNLQY 337
S ++C ++ DG L+ATAS +GTL+RI+N +G +QEVRRG DRAEIYS+A S N+Q+
Sbjct: 187 DSPLSCMTMALDGTLLATASVRGTLIRIFNTRDGTCVQEVRRGLDRAEIYSIALSPNVQW 246
Query: 338 LAVSSDKGTIHVFNLKI-------------NVGLTTND-----KPLPAPDPDV-PHISPS 378
LAVSSDKGT+HVF+L++ G ND +P + + S S
Sbjct: 247 LAVSSDKGTVHVFSLRVKDAEEDAKKGESATAGAQVNDNCNYGSTVPVTQTKIGSNTSSS 306
Query: 379 LSFIKGVLPKYFHSEWSVAQFRLHEGEQYIVAFGHEKNTVAVVGMDGSFYRCQFDPVNGG 438
LSF+KG+LPKYF SEWS AQFRL E +YI+AFG +++TV ++G+DGSFYR FDPVNGG
Sbjct: 307 LSFMKGILPKYFSSEWSFAQFRLPEITRYIMAFG-DQDTVMMIGLDGSFYRYSFDPVNGG 365
Query: 439 EMLQLECYNFLKPS 452
EM+ E + FLK S
Sbjct: 366 EMMLKEYHLFLKAS 379
>Os07g0670500
Length = 396
Score = 138 bits (348), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 94/242 (38%), Positives = 124/242 (51%), Gaps = 42/242 (17%)
Query: 226 LVHQIETAPNPKGLCAVSQQP-GS-IVLVCPGAQKGQVRVEHY-GARKTKFINAHTSRVA 282
L ++ET N G CAVS+ P GS CPG G +RVE + G I AH RVA
Sbjct: 152 LQRRVETGDNRAGACAVSRGPPGSPFAFACPGVNDGNLRVERWVGGFTPLVIGAHRWRVA 211
Query: 283 CFALSQDGRLIATASTKGTLVRIYNAAEGNLLQEVR------------------------ 318
A+S +L+ATAS KGT+VR++ A+G LLQEVR
Sbjct: 212 SVAMSWGAKLVATASVKGTIVRVFRVADGELLQEVRLAAAPAAEATAKKSKPHNTETKSL 271
Query: 319 --------RGADRAEIYSLAFSNNLQYLAVSSDKGTIHVFNLKI----NVGLTTNDKPLP 366
RG DRA+IYS+ FS + ++LAVSSDKGT+HVF++ + + D
Sbjct: 272 TKFRACMKRGFDRADIYSIVFSPDSEWLAVSSDKGTVHVFHINVCSPSSSKTGCQDTTQS 331
Query: 367 APDPDVPHISPSLSFIKGVLP-KYFHSEWSVAQFRLHEGEQYIVAFGHE--KNTVAVVGM 423
+ +S IK +L YF E SVAQF L + +Y+VAFG KN V ++GM
Sbjct: 332 YESYGAKAMKKYVSSIKDLLTLGYFDPERSVAQFHLCDNVKYLVAFGTRPNKNIVLIIGM 391
Query: 424 DG 425
DG
Sbjct: 392 DG 393
>Os02g0791800 WD-40 repeat containing protein
Length = 374
Score = 124 bits (311), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 105/375 (28%), Positives = 162/375 (43%), Gaps = 44/375 (11%)
Query: 103 SFNQDYGCFAAGTKSGFRIYNCDPFREIFRRDLXXXXXXXXXXXXXXXXXXEMLFRCNIL 162
SFNQD F GTK GFRI++ + +++++ EM FR NIL
Sbjct: 17 SFNQDNSLFYVGTKDGFRIFDAHTGKLHYQKNIGGIGNM------------EMYFRTNIL 64
Query: 163 ALVGGGDAPHYPPNKVMIWDDHQSRCIGELSFRSPXXXXXXXXXXXXXXXENKIFVYNFA 222
A+VG G+ P P + + D + +L+F++ +++ F+Y+
Sbjct: 65 AIVGTGEQPVLSPRCLRLIDTVAAVTKKDLNFKTSVLAVRLSRTRLVVVLQDRTFIYDVN 124
Query: 223 DLKLVHQIETAPNPKGLCAVSQQPGSIVLVCPGA-QKGQVRVEHYGARKTKFI---NAHT 278
++ +IET PN KGLCA + + L P + KG V Y A + + I +AH
Sbjct: 125 STTILEEIETVPNTKGLCAFAPNSEACYLAIPASTSKGSALV--YKASEPELICQIDAHE 182
Query: 279 SRVACFALSQDGRLIATASTKGTLVRIYNAAEGNLLQEVRRGADRAEIYSLAF--SNNL- 335
S +A A S +G +ATAS KGT++R++ A+ RRG + IYSL+F S++L
Sbjct: 183 SPLAAMAFSSNGTYLATASGKGTIIRVFLVAQATKSHSFRRGTYPSTIYSLSFGPSDDLP 242
Query: 336 QYLAVSSDKGTIHVFNLKINVGLTTNDKPL----------PAPDPDVPHISPSLSFIKGV 385
L +S G++H+F L L A DP HI I V
Sbjct: 243 DVLVATSSSGSLHMFFLDAARNRRNQTSKLLGSMIPGAITRALDPANHHI------IHNV 296
Query: 386 LPKYFHSEWSVAQFRLHEGEQYIVAFGHEKNTVAVVGMDGSFYRCQFDPVNGGE---MLQ 442
+P S +V + + + A + V ++ DG F + E +LQ
Sbjct: 297 IPAGIKSCVAVHKVENSQNSSKLPAL---RTVVYIITHDGYFREYSINTTKSNESSWVLQ 353
Query: 443 LECYNFLKPSSDQPQ 457
E N L PQ
Sbjct: 354 RE-LNLLDTGCSTPQ 367
>AK108828
Length = 344
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/77 (54%), Positives = 57/77 (74%)
Query: 276 AHTSRVACFALSQDGRLIATASTKGTLVRIYNAAEGNLLQEVRRGADRAEIYSLAFSNNL 335
AH + +A F L+ DG IA+AS KGTL+R++N G L+E+RRG DRA+IY +AF+
Sbjct: 1 AHDADLAQFTLNFDGSRIASASEKGTLIRLWNCYTGEPLRELRRGMDRADIYCIAFNTAS 60
Query: 336 QYLAVSSDKGTIHVFNL 352
Y+A SSDKGTIH+F+L
Sbjct: 61 TYIACSSDKGTIHIFSL 77
>Os07g0670400
Length = 250
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 76/237 (32%), Positives = 106/237 (44%), Gaps = 27/237 (11%)
Query: 99 LLHISFNQDYGCFAAGTKSGFRIYNC--DPFREIFRRDLXX--XXXXXXXXXXXXXXXXE 154
L+H++FN F A T +G R+++C P ++F RD+ E
Sbjct: 19 LVHLAFNLYSTGFIAATATGLRVFSCFSSPLNKVFARDVEVCPEDDGGCGGGGWKVAIAE 78
Query: 155 MLFRCNILALV-------GGGDAPHYPPNKVMIWDDHQSR--CIGE-LSFRSPXXXXXXX 204
M F A+V GGG +K+ W R C+ + L F
Sbjct: 79 M-FNEAFAAVVFRREKGGGGGTV-----DKICFWSIPNGRMYCMHKTLPFDGAVRGVRLV 132
Query: 205 XXXXXXXXENKIFVYNF----ADLKLVHQIETAPNPKGLCAVSQQPGS--IVLVCPGAQK 258
+ + +Y A K V +ETA NP GL AV Q G+ V P K
Sbjct: 133 GEFLLVAGDERAALYELPHASAPPKKVKVVETAANPLGLGAVVQPDGNARFVAAAPQRMK 192
Query: 259 GQVRVEHYGARKTKFINAHTSRVACFALSQDGRLIATASTKGTLVRIYNAAEGNLLQ 315
G V+V H A ++ AH S +A ALS DGRL+ATA +KGTLVRI++ ++G LLQ
Sbjct: 193 GMVQV-HRLAEDHVYVRAHYSSLAAIALSADGRLLATAGSKGTLVRIFSTSDGKLLQ 248
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.138 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,247,945
Number of extensions: 469213
Number of successful extensions: 1115
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 1097
Number of HSP's successfully gapped: 7
Length of query: 457
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 353
Effective length of database: 11,605,545
Effective search space: 4096757385
Effective search space used: 4096757385
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 158 (65.5 bits)