BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0928600 Os01g0928600|J065095L19
(115 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0928600 Similar to Serine palmitoyltransferase (Fragment) 234 1e-62
Os01g0928700 Similar to Serine palmitoyltransferase 117 1e-27
Os01g0928800 Similar to Serine palmitoyltransferase 117 2e-27
Os11g0516000 Similar to Serine palmitoyltransferase (Fragment) 112 6e-26
>Os01g0928600 Similar to Serine palmitoyltransferase (Fragment)
Length = 115
Score = 234 bits (596), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 115/115 (100%), Positives = 115/115 (100%)
Query: 1 TGAKKIAQIRDNSNFFRSELQKMGFEVLGDNDSPVMPFMVYNPAKMPAFSRECLKQNVSF 60
TGAKKIAQIRDNSNFFRSELQKMGFEVLGDNDSPVMPFMVYNPAKMPAFSRECLKQNVSF
Sbjct: 1 TGAKKIAQIRDNSNFFRSELQKMGFEVLGDNDSPVMPFMVYNPAKMPAFSRECLKQNVSF 60
Query: 61 FQVHHKSIKNLIKQSCPFSKSLMQICLKIVQSFVLFELHPVTLFCVIKKKFCSFN 115
FQVHHKSIKNLIKQSCPFSKSLMQICLKIVQSFVLFELHPVTLFCVIKKKFCSFN
Sbjct: 61 FQVHHKSIKNLIKQSCPFSKSLMQICLKIVQSFVLFELHPVTLFCVIKKKFCSFN 115
>Os01g0928700 Similar to Serine palmitoyltransferase
Length = 497
Score = 117 bits (294), Expect = 1e-27, Method: Composition-based stats.
Identities = 51/62 (82%), Positives = 57/62 (91%)
Query: 2 GAKKIAQIRDNSNFFRSELQKMGFEVLGDNDSPVMPFMVYNPAKMPAFSRECLKQNVSFF 61
GAKK+AQIR+NSNFFRSEL+KMGFEVLGDNDSPVMP M+YNPAKMPAFSRECL+Q V+
Sbjct: 375 GAKKLAQIRENSNFFRSELEKMGFEVLGDNDSPVMPIMLYNPAKMPAFSRECLRQKVAIV 434
Query: 62 QV 63
V
Sbjct: 435 TV 436
>Os01g0928800 Similar to Serine palmitoyltransferase
Length = 489
Score = 117 bits (293), Expect = 2e-27, Method: Composition-based stats.
Identities = 51/62 (82%), Positives = 58/62 (93%)
Query: 2 GAKKIAQIRDNSNFFRSELQKMGFEVLGDNDSPVMPFMVYNPAKMPAFSRECLKQNVSFF 61
GAKK+AQIR+NSNFFRSELQKMGFEVLGDNDSPVMP M+YNPAK+PAFSRECL+Q+V+
Sbjct: 367 GAKKLAQIRENSNFFRSELQKMGFEVLGDNDSPVMPIMLYNPAKIPAFSRECLRQHVAVV 426
Query: 62 QV 63
V
Sbjct: 427 TV 428
>Os11g0516000 Similar to Serine palmitoyltransferase (Fragment)
Length = 488
Score = 112 bits (280), Expect = 6e-26, Method: Composition-based stats.
Identities = 48/62 (77%), Positives = 57/62 (91%)
Query: 2 GAKKIAQIRDNSNFFRSELQKMGFEVLGDNDSPVMPFMVYNPAKMPAFSRECLKQNVSFF 61
GA+K+A+IR+NSNFFRSEL+KMGFEVLGDNDSPVMP M+YNPAK+PAFSRECL+Q V+
Sbjct: 367 GAQKLARIRENSNFFRSELKKMGFEVLGDNDSPVMPIMLYNPAKIPAFSRECLRQKVAVV 426
Query: 62 QV 63
V
Sbjct: 427 TV 428
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.328 0.138 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,394,466
Number of extensions: 112182
Number of successful extensions: 240
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 240
Number of HSP's successfully gapped: 4
Length of query: 115
Length of database: 17,035,801
Length adjustment: 82
Effective length of query: 33
Effective length of database: 12,754,253
Effective search space: 420890349
Effective search space used: 420890349
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 149 (62.0 bits)