BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0926700 Os01g0926700|J053083C13
         (113 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0926700  Conserved hypothetical protein                      221   7e-59
Os04g0398600  Similar to Pectin-glucuronyltransferase             166   4e-42
Os01g0926600  Similar to Pectin-glucuronyltransferase             159   4e-40
Os10g0180000  NpGUT1 homolog                                      154   2e-38
Os01g0926400  Similar to Pectin-glucuronyltransferase             138   1e-33

>Os01g0926700 Conserved hypothetical protein
          Length = 113

 Score =  221 bits (564), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 107/113 (94%), Positives = 107/113 (94%)

Query: 1   SSTLIGTFYHTLCPHSLWLFQRIDXXXXXXFQEEKAIGRGILPLLQRATLVQTFGQKNHV 60
           SSTLIGTFYHTLCPHSLWLFQRID      FQEEKAIGRGILPLLQRATLVQTFGQKNHV
Sbjct: 1   SSTLIGTFYHTLCPHSLWLFQRIDLLLLLLFQEEKAIGRGILPLLQRATLVQTFGQKNHV 60

Query: 61  CLKDGSITIPPYAPPQKMQAHLIPPDTPRSIFVYFRGLFYDTSNDPEGGYYAR 113
           CLKDGSITIPPYAPPQKMQAHLIPPDTPRSIFVYFRGLFYDTSNDPEGGYYAR
Sbjct: 61  CLKDGSITIPPYAPPQKMQAHLIPPDTPRSIFVYFRGLFYDTSNDPEGGYYAR 113



>Os04g0398600 Similar to Pectin-glucuronyltransferase
          Length = 420

 Score =  166 bits (419), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 78/83 (93%), Positives = 81/83 (97%)

Query: 31  FQEEKAIGRGILPLLQRATLVQTFGQKNHVCLKDGSITIPPYAPPQKMQAHLIPPDTPRS 90
           +QEEKAI RGILPLLQRATLVQTFGQ+NHVCLK+GSITIPPYAPPQKMQAHLIPPDTPRS
Sbjct: 168 YQEEKAIERGILPLLQRATLVQTFGQENHVCLKEGSITIPPYAPPQKMQAHLIPPDTPRS 227

Query: 91  IFVYFRGLFYDTSNDPEGGYYAR 113
           IFVYFRGLFYDT NDPEGGYYAR
Sbjct: 228 IFVYFRGLFYDTGNDPEGGYYAR 250



>Os01g0926600 Similar to Pectin-glucuronyltransferase
          Length = 415

 Score =  159 bits (402), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 73/83 (87%), Positives = 81/83 (97%)

Query: 31  FQEEKAIGRGILPLLQRATLVQTFGQKNHVCLKDGSITIPPYAPPQKMQAHLIPPDTPRS 90
           +QEEKAI RGILPLL+RATLVQTFGQK+HVCLK+GSITIPPYAPPQKM+ HL+PP+TPRS
Sbjct: 163 YQEEKAIERGILPLLRRATLVQTFGQKDHVCLKEGSITIPPYAPPQKMKTHLVPPETPRS 222

Query: 91  IFVYFRGLFYDTSNDPEGGYYAR 113
           IFVYFRGLFYDT+NDPEGGYYAR
Sbjct: 223 IFVYFRGLFYDTANDPEGGYYAR 245



>Os10g0180000 NpGUT1 homolog
          Length = 417

 Score =  154 bits (389), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 70/83 (84%), Positives = 77/83 (92%)

Query: 31  FQEEKAIGRGILPLLQRATLVQTFGQKNHVCLKDGSITIPPYAPPQKMQAHLIPPDTPRS 90
           FQE KAI RGILP+L+RATLVQTFGQKNH CLKDGSIT+PPY P  K++AHL+PP+TPRS
Sbjct: 165 FQEAKAIERGILPVLRRATLVQTFGQKNHACLKDGSITVPPYTPAHKIRAHLVPPETPRS 224

Query: 91  IFVYFRGLFYDTSNDPEGGYYAR 113
           IFVYFRGLFYDTSNDPEGGYYAR
Sbjct: 225 IFVYFRGLFYDTSNDPEGGYYAR 247



>Os01g0926400 Similar to Pectin-glucuronyltransferase
          Length = 422

 Score =  138 bits (347), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 64/83 (77%), Positives = 74/83 (89%)

Query: 31  FQEEKAIGRGILPLLQRATLVQTFGQKNHVCLKDGSITIPPYAPPQKMQAHLIPPDTPRS 90
           +QEE+AI RGILP+L+RATLVQTFGQ++H CL+ GSIT+PPYA P+KM+AH I P TPRS
Sbjct: 170 YQEERAIERGILPVLRRATLVQTFGQRHHPCLQPGSITVPPYADPRKMEAHRISPATPRS 229

Query: 91  IFVYFRGLFYDTSNDPEGGYYAR 113
           IFVYFRGLFYD  NDPEGGYYAR
Sbjct: 230 IFVYFRGLFYDMGNDPEGGYYAR 252



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.324    0.142    0.457 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,391,609
Number of extensions: 164806
Number of successful extensions: 456
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 458
Number of HSP's successfully gapped: 5
Length of query: 113
Length of database: 17,035,801
Length adjustment: 80
Effective length of query: 33
Effective length of database: 12,858,681
Effective search space: 424336473
Effective search space used: 424336473
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 149 (62.0 bits)