Os01g0926400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Pectin-glucuronyltransferase.
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Os01g0926400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Pectin-glucuronyltransferase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 230.08 | 0.713 | 7.44 | -0.59 | 1.02 | 0.0932 | 0.526 | 5.4 | -0.344 | 23 | 1001 | 7648 | -- | -- |
| 243.16 | 0.726 | 7.42 | -0.238 | 1.01 | 0.995 | 0.388 | -- | -0.42 | 23 | 999.6 | 13431 | -- | -- |
| 231.12 | 0.708 | 7.44 | -0.617 | 1.01 | 0.0908 | -- | 5.44 | -0.344 | 22.9 | 1002 | 7639 | -- | -- |
| 244.24 | 0.728 | 7.42 | -0.266 | 1.01 | 1.04 | -- | -- | -0.442 | 22.9 | 999.6 | 13436 | -- | -- |
| 295.27 | 0.8 | 7.43 | -0.639 | -- | 0.0696 | -- | 5.56 | -0.352 | -- | 1002 | 7661 | -- | -- |
| 270.59 | 0.771 | 7.39 | -0.488 | 1.02 | -- | 0.54 | -- | -0.317 | 23 | -- | -- | -- | -- |
| 271.81 | 0.772 | 7.39 | -0.509 | 1.02 | -- | -- | -- | -0.318 | 22.9 | -- | -- | -- | -- |
| 306.88 | 0.816 | 7.4 | -0.241 | -- | 1.07 | -- | -- | -0.448 | -- | 999.2 | 13390 | -- | -- |
| 245.81 | 0.73 | 7.42 | -- | 1 | 1.08 | -- | -- | -0.42 | 22.8 | 999.2 | 14007 | -- | -- |
| 336.04 | 0.857 | 7.36 | -0.487 | -- | -- | -- | -- | -0.311 | -- | -- | -- | -- | -- |
| 278.64 | 0.781 | 7.38 | -- | 1.01 | -- | -- | -- | -0.261 | 22.9 | -- | -- | -- | -- |
| 308.12 | 0.818 | 7.39 | -- | -- | 1.09 | -- | -- | -0.428 | -- | 999.3 | 14150 | -- | -- |
| 342.3 | 0.864 | 7.35 | -- | -- | -- | -- | -- | -0.257 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 228.17 | atmosphere | 1005 | 4320 | > th | dose independent | rect. | 9 | 2 |
| 3 | 228.41 | atmosphere | 1005 | 4320 | < th | dose independent | rect. | 10 | 1 |
| 4 | 228.47 | atmosphere | 1005 | 4320 | < th | dose independent | rect. | 8 | 3 |
| 6 | 228.65 | wind | 1 | 43200 | < th | dose dependent | rect. | 2 | 1 |
| 25 | 231.46 | atmosphere | 995 | 14400 | < th | dose dependent | sin | 15 | NA |
| 26 | 231.46 | atmosphere | 995 | 14400 | < th | dose dependent | rect. | 15 | 13 |
| 37 | 231.49 | atmosphere | 995 | 14400 | < th | dose dependent | no | NA | NA |
| 53 | 231.49 | atmosphere | 995 | 14400 | < th | dose dependent | rect. | 22 | 20 |
| 126 | 231.71 | atmosphere | 995 | 14400 | < th | dose dependent | sin | 3 | NA |
| 128 | 231.72 | atmosphere | 1005 | 4320 | < th | dose dependent | rect. | 11 | 5 |
| 146 | 231.79 | atmosphere | 995 | 14400 | > th | dose independent | sin | 6 | NA |
| 163 | 231.88 | atmosphere | 995 | 14400 | > th | dose independent | sin | 11 | NA |
| 171 | 231.95 | atmosphere | 995 | 14400 | < th | dose independent | sin | 5 | NA |
| 174 | 231.96 | atmosphere | 995 | 14400 | < th | dose independent | sin | 11 | NA |
| 180 | 232.01 | atmosphere | 995 | 14400 | < th | dose independent | rect. | 18 | 21 |
| 185 | 232.03 | atmosphere | 1005 | 4320 | < th | dose dependent | rect. | 15 | 1 |
| 250 | 232.43 | atmosphere | 1000 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 257 | 232.46 | atmosphere | 995 | 14400 | < th | dose independent | rect. | 21 | 18 |
| 260 | 232.46 | atmosphere | 1005 | 4320 | < th | dose dependent | sin | 23 | NA |
| 274 | 232.52 | atmosphere | 1000 | 14400 | < th | dose dependent | rect. | 23 | 5 |
| 276 | 232.53 | atmosphere | 1000 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 281 | 232.55 | atmosphere | 1000 | 14400 | < th | dose dependent | rect. | 21 | 7 |
| 286 | 232.56 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 20 | 19 |
| 290 | 232.57 | atmosphere | 1000 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 368 | 232.80 | atmosphere | 1000 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 385 | 232.83 | atmosphere | 995 | 14400 | < th | dose dependent | rect. | 17 | 7 |
| 413 | 232.91 | atmosphere | 1000 | 14400 | < th | dose dependent | sin | 11 | NA |
| 431 | 232.97 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 17 | 14 |
| 438 | 232.98 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 17 | 17 |
| 472 | 233.03 | humidity | 80 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 495 | 233.08 | atmosphere | 995 | 14400 | < th | dose independent | rect. | 17 | 13 |
| 542 | 233.19 | atmosphere | 995 | 14400 | < th | dose independent | rect. | 18 | 7 |
| 619 | 233.34 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 15 | 16 |
| 691 | 233.45 | atmosphere | 995 | 14400 | < th | dose independent | rect. | 15 | 15 |
| 705 | 233.46 | atmosphere | 995 | 14400 | < th | dose dependent | rect. | 4 | 11 |
| 740 | 233.52 | atmosphere | 995 | 14400 | < th | dose independent | no | NA | NA |
| 792 | 233.53 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 18 | 8 |
| 810 | 233.56 | atmosphere | 1000 | 14400 | > th | dose independent | rect. | 15 | 3 |
| 813 | 233.56 | temperature | 20 | 270 | > th | dose independent | rect. | 13 | 16 |
| 863 | 233.62 | atmosphere | 995 | 14400 | > th | dose independent | no | NA | NA |
| 894 | 233.63 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 18 | 6 |
| 900 | 233.63 | atmosphere | 995 | 14400 | < th | dose independent | rect. | 1 | 23 |
| 967 | 233.70 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 1 | 23 |
| 968 | 233.70 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 3 | 23 |
| 969 | 233.70 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 23 | 23 |