Os04g0398600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Pectin-glucuronyltransferase.
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Os04g0398600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Pectin-glucuronyltransferase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 119.25 | 0.513 | 6.39 | -0.311 | 0.81 | 0.607 | 0.497 | -0.239 | -0.56 | 11.9 | 20.36 | 722 | -- | -- |
| 119.41 | 0.509 | 6.39 | -0.274 | 0.815 | 0.633 | 0.562 | -- | -0.555 | 11.9 | 20.4 | 721 | -- | -- |
| 120.19 | 0.511 | 6.39 | -0.327 | 0.811 | 0.594 | -- | -0.393 | -0.56 | 11.8 | 20.4 | 764 | -- | -- |
| 120.68 | 0.512 | 6.39 | -0.255 | 0.813 | 0.645 | -- | -- | -0.554 | 11.7 | 20.39 | 721 | -- | -- |
| 152.94 | 0.579 | 6.39 | -0.127 | -- | 0.539 | -- | 0.288 | -0.511 | -- | 20.4 | 764 | -- | -- |
| 130.34 | 0.535 | 6.36 | -0.0441 | 0.733 | -- | 0.64 | -- | -0.418 | 12.2 | -- | -- | -- | -- |
| 132.01 | 0.538 | 6.36 | -0.0202 | 0.732 | -- | -- | -- | -0.416 | 11.9 | -- | -- | -- | -- |
| 153.38 | 0.579 | 6.4 | -0.178 | -- | 0.524 | -- | -- | -0.522 | -- | 20.4 | 764 | -- | -- |
| 122.29 | 0.515 | 6.39 | -- | 0.826 | 0.583 | -- | -- | -0.535 | 11.7 | 20.38 | 700 | -- | -- |
| 165.71 | 0.602 | 6.37 | -0.0426 | -- | -- | -- | -- | -0.426 | -- | -- | -- | -- | -- |
| 132.02 | 0.537 | 6.36 | -- | 0.732 | -- | -- | -- | -0.413 | 11.9 | -- | -- | -- | -- |
| 154.18 | 0.58 | 6.39 | -- | -- | 0.498 | -- | -- | -0.498 | -- | 20.4 | 764 | -- | -- |
| 165.76 | 0.601 | 6.37 | -- | -- | -- | -- | -- | -0.421 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 104.34 | humidity | 80.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 2 | 104.55 | humidity | 70.0 | 270 | > th | dose dependent | rect. | 3 | 4 |
| 4 | 104.90 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 3 | 4 |
| 5 | 105.01 | temperature | 20.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 7 | 105.23 | humidity | 80.0 | 270 | > th | dose independent | rect. | 2 | 6 |
| 8 | 105.24 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 2 | 6 |
| 12 | 105.59 | temperature | 20.0 | 270 | > th | dose independent | rect. | 5 | 1 |
| 18 | 106.08 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 4 | 2 |
| 19 | 106.11 | temperature | 30.0 | 270 | < th | dose independent | rect. | 17 | 10 |
| 27 | 106.32 | humidity | 80.0 | 270 | > th | dose dependent | rect. | 5 | 1 |
| 29 | 106.33 | radiation | 20.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 31 | 106.36 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 7 | 20 |
| 38 | 106.63 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 4 |
| 44 | 106.67 | wind | 9.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 45 | 106.67 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 47 | 106.67 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 48 | 106.67 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 50 | 106.67 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 51 | 106.67 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 53 | 106.67 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 20 |
| 59 | 106.76 | humidity | 50.0 | 270 | > th | dose independent | rect. | 7 | 20 |
| 60 | 106.77 | humidity | 60.0 | 270 | > th | dose independent | rect. | 17 | 10 |
| 64 | 106.82 | wind | 9.0 | 270 | < th | dose dependent | rect. | 3 | 4 |
| 65 | 106.87 | temperature | 30.0 | 270 | < th | dose independent | rect. | 7 | 20 |
| 69 | 107.06 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 17 | 10 |
| 72 | 107.08 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 4 |
| 74 | 107.08 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 4 |
| 81 | 107.22 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 20 |
| 96 | 107.42 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 20 |
| 97 | 107.42 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 20 |
| 99 | 107.43 | radiation | 10.0 | 270 | < th | dose independent | rect. | 17 | 10 |
| 121 | 107.61 | wind | 1.0 | 270 | > th | dose independent | rect. | 7 | 20 |
| 158 | 107.92 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 9 | 19 |
| 167 | 108.04 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 5 | 4 |
| 173 | 108.09 | temperature | 20.0 | 30 | > th | dose independent | rect. | 5 | 4 |
| 176 | 108.12 | wind | 7.0 | 30 | < th | dose dependent | rect. | 5 | 4 |
| 177 | 108.12 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 3 | 15 |
| 185 | 108.18 | wind | 9.0 | 270 | < th | dose independent | rect. | 3 | 15 |
| 188 | 108.20 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 5 | 6 |
| 191 | 108.21 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 9 | 20 |
| 193 | 108.23 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 18 | 9 |
| 216 | 108.31 | wind | 9.0 | 270 | < th | dose independent | rect. | 18 | 9 |
| 223 | 108.35 | humidity | 70.0 | 30 | > th | dose independent | rect. | 18 | 11 |
| 225 | 108.36 | temperature | 10.0 | 270 | > th | dose independent | rect. | 18 | 9 |
| 230 | 108.36 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 15 |
| 231 | 108.36 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 15 |
| 241 | 108.41 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 18 | 9 |
| 242 | 108.41 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 18 | 9 |
| 243 | 108.41 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 9 | 20 |
| 264 | 108.46 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 18 | 11 |
| 265 | 108.48 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 15 |
| 266 | 108.48 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 15 |
| 286 | 108.63 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 9 | 20 |
| 287 | 108.63 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 9 | 20 |
| 306 | 108.78 | wind | 9.0 | 270 | < th | dose dependent | rect. | 5 | 1 |
| 308 | 108.79 | wind | 5.0 | 10 | < th | dose independent | rect. | 5 | 4 |
| 310 | 108.81 | radiation | 40.0 | 10 | < th | dose independent | rect. | 5 | 4 |
| 322 | 108.89 | radiation | 1.0 | 10 | < th | dose dependent | sin | 11 | NA |
| 354 | 109.07 | temperature | 10.0 | 10 | > th | dose independent | rect. | 5 | 4 |
| 356 | 109.07 | temperature | 30.0 | 10 | < th | dose independent | rect. | 5 | 4 |
| 357 | 109.07 | humidity | 50.0 | 10 | > th | dose independent | rect. | 5 | 4 |
| 359 | 109.07 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 5 | 4 |
| 360 | 109.07 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 5 | 4 |
| 367 | 109.07 | temperature | 10.0 | 10 | > th | dose independent | rect. | 9 | 20 |
| 390 | 109.16 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 5 | 4 |
| 405 | 109.23 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 19 |
| 406 | 109.23 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 3 | 4 |
| 407 | 109.23 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 11 | 18 |
| 413 | 109.28 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 5 | 5 |
| 416 | 109.28 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 5 | 5 |
| 417 | 109.28 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 5 | 5 |
| 419 | 109.28 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 10 | 19 |
| 483 | 109.59 | temperature | 20.0 | 270 | > th | dose independent | rect. | 3 | 15 |
| 485 | 109.60 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 20 | 9 |
| 506 | 109.76 | wind | 1.0 | 270 | > th | dose independent | rect. | 7 | 6 |
| 519 | 109.78 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 5 | 4 |
| 524 | 109.81 | wind | 9.0 | 270 | < th | dose independent | rect. | 13 | 18 |
| 581 | 110.01 | radiation | 40.0 | 4320 | < th | dose dependent | rect. | 19 | 10 |
| 582 | 110.01 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 5 | 17 |
| 583 | 110.02 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 5 | 6 |
| 585 | 110.03 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 6 |
| 586 | 110.03 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 7 | 6 |
| 587 | 110.03 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 6 |
| 588 | 110.03 | temperature | 10.0 | 270 | > th | dose independent | rect. | 13 | 18 |
| 593 | 110.06 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 6 |
| 595 | 110.06 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 6 |
| 610 | 110.15 | humidity | 50.0 | 270 | > th | dose independent | rect. | 7 | 6 |
| 620 | 110.21 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 7 | 20 |
| 624 | 110.23 | wind | 9.0 | 30 | < th | dose dependent | rect. | 18 | 11 |
| 644 | 110.32 | wind | 1.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 651 | 110.37 | radiation | 1.0 | 30 | < th | dose independent | sin | 11 | NA |
| 652 | 110.37 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 6 |
| 656 | 110.37 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 5 | 15 |
| 668 | 110.41 | radiation | 1.0 | 270 | > th | dose independent | rect. | 7 | 6 |
| 669 | 110.41 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 13 | 18 |
| 673 | 110.41 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 13 | 18 |
| 684 | 110.47 | radiation | 1.0 | 30 | > th | dose independent | sin | 11 | NA |
| 689 | 110.48 | wind | 1.0 | 270 | > th | dose independent | rect. | 2 | 5 |
| 696 | 110.50 | wind | 9.0 | 270 | < th | dose dependent | rect. | 18 | 9 |
| 722 | 110.60 | humidity | 60.0 | 10 | > th | dose independent | rect. | 5 | 6 |
| 730 | 110.62 | temperature | 30.0 | 30 | < th | dose independent | rect. | 18 | 11 |
| 731 | 110.62 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 9 | 20 |
| 739 | 110.65 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 5 | 4 |
| 743 | 110.67 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 5 | 5 |
| 758 | 110.70 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 19 | 10 |
| 781 | 110.78 | wind | 1.0 | 270 | > th | dose independent | rect. | 18 | 9 |
| 807 | 110.86 | temperature | 20.0 | 10 | > th | dose independent | rect. | 5 | 6 |
| 823 | 110.93 | wind | 5.0 | 30 | < th | dose independent | rect. | 18 | 11 |
| 848 | 111.01 | radiation | 40.0 | 90 | < th | dose independent | rect. | 15 | 18 |
| 860 | 111.05 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 11 | 18 |
| 863 | 111.06 | temperature | 30.0 | 30 | < th | dose independent | rect. | 11 | 18 |
| 890 | 111.10 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 5 | 13 |
| 893 | 111.12 | radiation | 40.0 | 30 | < th | dose independent | rect. | 5 | 13 |
| 946 | 111.28 | temperature | 30.0 | 10 | < th | dose independent | rect. | 5 | 6 |
| 947 | 111.28 | temperature | 30.0 | 270 | < th | dose independent | rect. | 7 | 6 |
| 957 | 111.30 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 18 | 11 |
| 962 | 111.32 | radiation | 40.0 | 90 | < th | dose independent | rect. | 13 | 20 |
| 991 | 111.40 | radiation | 1.0 | 30 | > th | dose independent | rect. | 16 | 17 |
| 994 | 111.40 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 3 | 13 |