BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0886000 Os01g0886000|AK106349
(354 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0886000 Protein of unknown function DUF179 family protein 594 e-170
Os05g0420200 Protein of unknown function DUF179 family protein 339 2e-93
Os10g0330400 Protein of unknown function DUF179 family protein 132 5e-31
Os10g0485100 Protein of unknown function DUF179 family protein 76 5e-14
>Os01g0886000 Protein of unknown function DUF179 family protein
Length = 354
Score = 594 bits (1531), Expect = e-170, Method: Compositional matrix adjust.
Identities = 307/354 (86%), Positives = 307/354 (86%)
Query: 1 MWALTPNSGGSSCXXXXXXXXXXXXXXXXXXXXXXXXRWCSWRRRQPAERWPKLAVSASG 60
MWALTPNSGGSSC RWCSWRRRQPAERWPKLAVSASG
Sbjct: 1 MWALTPNSGGSSCLPARRTPPPLAAAGEAGSLAAGPGRWCSWRRRQPAERWPKLAVSASG 60
Query: 61 RKSKGGRDEGGGDEXXXXXXXXXXXXXXXXXXXXXXXVSNNELQSNDTMYVPGNLSYWRD 120
RKSKGGRDEGGGDE VSNNELQSNDTMYVPGNLSYWRD
Sbjct: 61 RKSKGGRDEGGGDEPKKNKAASSSSSGKGDASAPSGDVSNNELQSNDTMYVPGNLSYWRD 120
Query: 121 VRASFVVPKVQTVDAHTLPQAATDAPVHCLPRKWAHSIPMPESGCVLVAAEELDGNGTFE 180
VRASFVVPKVQTVDAHTLPQAATDAPVHCLPRKWAHSIPMPESGCVLVAAEELDGNGTFE
Sbjct: 121 VRASFVVPKVQTVDAHTLPQAATDAPVHCLPRKWAHSIPMPESGCVLVAAEELDGNGTFE 180
Query: 181 RTVILLLRLGSRDAYDGPFGVILNRPLYTKMKHVNPSFRNQATPFSDCSLFFGGPVDMSI 240
RTVILLLRLGSRDAYDGPFGVILNRPLYTKMKHVNPSFRNQATPFSDCSLFFGGPVDMSI
Sbjct: 181 RTVILLLRLGSRDAYDGPFGVILNRPLYTKMKHVNPSFRNQATPFSDCSLFFGGPVDMSI 240
Query: 241 FLMRTTDDRPIKGFEEVSPGVCFGFRTDLEKASALLKSGAVKPEDLNFYVGYSAWDYDQL 300
FLMRTTDDRPIKGFEEVSPGVCFGFRTDLEKASALLKSGAVKPEDLNFYVGYSAWDYDQL
Sbjct: 241 FLMRTTDDRPIKGFEEVSPGVCFGFRTDLEKASALLKSGAVKPEDLNFYVGYSAWDYDQL 300
Query: 301 LSEIDQGYWHVTSCSSGLISDSLATDPSCLWTEILKLMGGQYAELSQKPKEDGS 354
LSEIDQGYWHVTSCSSGLISDSLATDPSCLWTEILKLMGGQYAELSQKPKEDGS
Sbjct: 301 LSEIDQGYWHVTSCSSGLISDSLATDPSCLWTEILKLMGGQYAELSQKPKEDGS 354
>Os05g0420200 Protein of unknown function DUF179 family protein
Length = 352
Score = 339 bits (870), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 164/256 (64%), Positives = 202/256 (78%), Gaps = 8/256 (3%)
Query: 100 NNELQSNDTMYVPGNLSYWRDVRASFVVPKVQTVDAHTLP---QAATDAPVHCLPRKWAH 156
+NE +SN + N +YWRDVRA+ V + + + + P + ++ P H LP+KWAH
Sbjct: 100 HNESKSNIS-----NSNYWRDVRANLVRREQELLVDPSAPAEQKTSSGEPAHQLPQKWAH 154
Query: 157 SIPMPESGCVLVAAEELDGNGTFERTVILLLRLGSRDAYDGPFGVILNRPLYTKMKHVNP 216
I MPE+GCVLVA E LD + FERTVILLLRLGSR +D PFGVILNRPLYTK+K+VNP
Sbjct: 155 PITMPEAGCVLVATEVLDDDSIFERTVILLLRLGSRGTFDSPFGVILNRPLYTKIKNVNP 214
Query: 217 SFRNQATPFSDCSLFFGGPVDMSIFLMRTTDDRPIKGFEEVSPGVCFGFRTDLEKASALL 276
SF++QATPF D LFFGGPVDMS+FL+R +D+ +KGFEEV PG+ FGFRTDLEKA+ L+
Sbjct: 215 SFQDQATPFGDSPLFFGGPVDMSMFLVRASDNSRLKGFEEVIPGIRFGFRTDLEKAAVLM 274
Query: 277 KSGAVKPEDLNFYVGYSAWDYDQLLSEIDQGYWHVTSCSSGLISDSLATDPSCLWTEILK 336
KSGA+K +DL F+VG++AWDY+QLLSEI GYW V SCS+ LISD+L DPSCLWTEIL+
Sbjct: 275 KSGAIKSQDLRFFVGHAAWDYEQLLSEIRAGYWAVASCSTELISDALTGDPSCLWTEILQ 334
Query: 337 LMGGQYAELSQKPKED 352
LMGG Y+ELSQKPKED
Sbjct: 335 LMGGHYSELSQKPKED 350
>Os10g0330400 Protein of unknown function DUF179 family protein
Length = 296
Score = 132 bits (331), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 77/195 (39%), Positives = 104/195 (53%), Gaps = 13/195 (6%)
Query: 153 KWAHSIPMPESGCVLVAAEELDGNGTFERTVILLLRLGSRDAYDGPFGVILNRPLYTKMK 212
KWAH + PE GC+L+A E+LDG+ FERTV+LLL G GP GVILNRP +K
Sbjct: 102 KWAHPLVEPEKGCLLIATEKLDGSHIFERTVVLLLSAG----VLGPVGVILNRPSLMSIK 157
Query: 213 HVNPSFRNQ--ATPFSDCSLFFGGPVDMSIFLM--RTTDDRPIKG----FEEVSPGVCFG 264
F A FS LFFGGP++ FL+ R + G F+EV PGV +G
Sbjct: 158 EAQAVFAETDIAGAFSGRPLFFGGPLEECFFLLGPRAAAAGDVVGRTGLFDEVMPGVHYG 217
Query: 265 FRTDLEKASALLKSGAVKPEDLNFYVGYSAWDYDQLLSEIDQGYWHVTSCSSGLISDSLA 324
R + A+ L+K G V D F+ G+ W+ +QL E+ G W V +CS ++ +
Sbjct: 218 TRESVGCAAELVKRGVVGVRDFRFFDGFCGWEREQLRDEVRAGLWRVAACSPAVLGLATV 277
Query: 325 TDPSCLWTEILKLMG 339
LW E+ L+G
Sbjct: 278 VKGG-LWEEVQGLVG 291
>Os10g0485100 Protein of unknown function DUF179 family protein
Length = 855
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 80/151 (52%), Gaps = 8/151 (5%)
Query: 163 SGCVLVAAEELDGNGTFERTVILLLRLGSRDAYDGPFGVILNRPL-YTKMKHVNPSFRNQ 221
+G VL A +L F+ + +L++ S D+ +G G+I+N+ L + K+++ S
Sbjct: 700 TGSVLTATSKLGSAVPFDNSQVLIV---SADSREGFHGLIINKRLSWDTFKNLDGSME-- 754
Query: 222 ATPFSDCSLFFGGPVDMSIFLMRTTDDRPIKGFEEVSPGVCFGFRTDLEKASALLKSGAV 281
P LF+GGPV + + + + G+ +V PGV +G + + +KSG
Sbjct: 755 --PIKHAPLFYGGPVVVQGYYLVSLSRVAFDGYLQVIPGVYYGNVAATAQVTRRIKSGEQ 812
Query: 282 KPEDLNFYVGYSAWDYDQLLSEIDQGYWHVT 312
E+L F++G+S W+Y QL E+ +G W V+
Sbjct: 813 SAENLWFFLGFSNWEYSQLFDELSEGAWQVS 843
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.135 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,558,872
Number of extensions: 524659
Number of successful extensions: 1264
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1257
Number of HSP's successfully gapped: 4
Length of query: 354
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 252
Effective length of database: 11,709,973
Effective search space: 2950913196
Effective search space used: 2950913196
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)