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Os10g0330400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF179 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.9 (0.0391) R2 : 0.923
β1 : -0.645 (0.144) R2dD : 0.00423 R2D : 0.00021
β2 : 4.83 (0.117) R2dC : 0.396 R2C : 0.688
β3 : -3.12 (0.102) R2dE : 0.221 R2E : 0.515
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 3.28 (0.343) R2dD*E : 0.0145 R2D*E : 0.00363
γ1 : -0.336 (0.0835) R2dN8 : 0.00413 R2N8 : -0.00122
σ : 0.731
deviance : 246.52
__
_____
C
peak time of C : 4.48
E
wheather : radiation
threshold : 1.82
memory length : 257
response mode : > th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 21.4
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
240.32 0.728 10.9 -0.713 4.71 -3.16 1.85 3.9 -0.368 4.48 1.772 258 21.1 --
289.98 0.793 10.9 -0.64 4.83 -3.04 -1 -- -0.336 4.39 1.754 264 21.4 --
246.52 0.731 10.9 -0.645 4.83 -3.12 -- 3.28 -0.336 4.48 1.82 257 21.4 --
292.13 0.796 10.9 -0.622 4.91 -2.94 -- -- -0.359 4.36 1.76 257 21.3 --
370.22 0.896 10.7 -0.929 -- -6.81 -- 1.95 -0.343 -- -1.525e-05 1071 0.0348 --
342.71 0.868 10.9 -0.742 7.03 -- -1.85 -- -0.373 2.96 -- -- -- --
354.21 0.881 10.9 -0.7 7.02 -- -- -- -0.362 2.98 -- -- -- --
354.21 0.877 11 -0.701 -- -7.02 -- -- -0.362 -- -3.288 1094 0.138 --
302.53 0.81 10.9 -- 4.83 -2.97 -- -- -0.335 4.35 1.76 257 21.2 --
3187.03 2.64 10.9 -0.401 -- -- -- -- -0.18 -- -- -- -- --
367.14 0.896 10.9 -- 7.01 -- -- -- -0.284 2.98 -- -- -- --
367.14 0.892 10.9 -- -- -7.01 -- -- -0.285 -- -2.955 1281 1.7 --
3191.27 2.64 10.9 -- -- -- -- -- -0.136 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 227.43 atmosphere 1015.0 270 < th dose dependent rect. 12 8
3 232.40 radiation 40.0 90 < th dose dependent rect. 15 18
4 234.23 precipitation 0.1 270 < th dose independent rect. 20 16
5 234.23 precipitation 0.1 270 < th dose dependent rect. 20 16
9 235.20 precipitation 0.1 270 < th dose independent rect. 12 8
10 235.20 precipitation 0.1 270 < th dose dependent rect. 12 8
11 235.31 radiation 40.0 10 < th dose dependent rect. 14 21
12 235.46 wind 1.0 270 > th dose independent rect. 12 8
13 235.67 wind 9.0 270 < th dose independent rect. 12 8
15 235.88 temperature 10.0 270 > th dose independent rect. 12 8
16 235.88 atmosphere 1015.0 270 < th dose independent rect. 12 8
17 235.88 temperature 10.0 270 > th dose independent rect. 20 16
18 235.88 atmosphere 995.0 270 > th dose independent rect. 20 16
20 236.24 wind 9.0 270 < th dose independent rect. 20 16
22 236.52 humidity 50.0 270 > th dose independent rect. 20 16
31 238.77 atmosphere 1015.0 10 < th dose dependent rect. 15 7
32 238.80 radiation 20.0 90 < th dose independent rect. 15 18
33 239.11 atmosphere 1015.0 90 < th dose dependent rect. 15 6
35 239.70 radiation 1.0 270 > th dose independent rect. 4 10
46 239.99 temperature 30.0 270 < th dose independent rect. 20 16
72 242.83 atmosphere 995.0 270 > th dose independent rect. 12 8
76 242.92 precipitation 0.1 270 < th dose independent rect. 6 8
77 242.92 precipitation 0.1 270 < th dose dependent rect. 6 8
84 243.51 temperature 10.0 270 > th dose independent rect. 6 8
85 243.51 atmosphere 995.0 270 > th dose independent rect. 6 8
86 243.51 atmosphere 1015.0 270 < th dose independent rect. 6 8
87 243.51 temperature 10.0 270 > th dose independent rect. 14 16
109 244.39 precipitation 0.1 270 < th dose independent rect. 14 16
110 244.39 precipitation 0.1 270 < th dose dependent rect. 14 16
113 244.55 wind 9.0 270 < th dose independent rect. 14 16
122 244.89 humidity 50.0 270 > th dose independent rect. 6 8
134 245.25 atmosphere 1015.0 270 < th dose independent rect. 20 16
141 245.52 radiation 40.0 270 < th dose independent rect. 14 16
146 245.75 wind 9.0 270 < th dose independent rect. 6 8
152 246.06 temperature 30.0 270 < th dose independent rect. 7 8
162 246.30 radiation 30.0 10 < th dose independent rect. 14 19
179 246.79 radiation 40.0 270 < th dose independent rect. 12 8
180 246.80 radiation 40.0 30 < th dose independent rect. 15 5
184 247.03 radiation 1.0 270 > th dose independent sin 3 NA
205 247.23 temperature 10.0 1440 > th dose independent rect. 16 5
208 247.23 temperature 10.0 1440 > th dose independent rect. 21 19
212 247.30 precipitation 0.1 30 < th dose independent rect. 15 5
213 247.30 precipitation 0.1 30 < th dose dependent rect. 15 5
218 247.40 wind 9.0 30 < th dose independent rect. 15 5
222 247.49 wind 1.0 270 > th dose independent rect. 14 16
228 247.93 temperature 10.0 30 > th dose independent rect. 15 5
230 247.93 atmosphere 1010.0 30 < th dose independent rect. 15 5
232 247.93 temperature 10.0 30 > th dose independent rect. 20 19
233 247.93 atmosphere 995.0 30 > th dose independent rect. 20 19
237 248.05 precipitation 0.1 30 < th dose independent rect. 20 19
238 248.05 precipitation 0.1 30 < th dose dependent rect. 20 19
263 248.84 radiation 40.0 30 < th dose dependent rect. 14 6
265 248.92 wind 1.0 30 > th dose independent rect. 15 5
286 249.40 radiation 40.0 10 < th dose dependent rect. 12 23
306 249.81 humidity 50.0 30 > th dose independent rect. 20 19
313 250.06 wind 9.0 30 < th dose independent rect. 20 19
315 250.13 radiation 30.0 10 < th dose independent rect. 14 21
351 251.01 atmosphere 995.0 30 > th dose independent rect. 15 5
354 251.06 atmosphere 995.0 270 > th dose independent rect. 14 17
425 252.32 radiation 30.0 270 < th dose independent rect. 23 10
435 252.49 wind 1.0 270 > th dose independent rect. 7 7
484 253.37 wind 9.0 30 < th dose independent rect. 15 18
486 253.44 wind 1.0 10 > th dose independent rect. 15 7
492 253.57 precipitation 0.1 30 < th dose independent rect. 15 18
493 253.57 precipitation 0.1 30 < th dose dependent rect. 15 18
494 253.60 radiation 40.0 270 < th dose dependent rect. 23 10
495 253.64 precipitation 0.1 10 < th dose independent rect. 15 7
496 253.64 precipitation 0.1 10 < th dose dependent rect. 15 7
503 253.77 temperature 30.0 270 < th dose independent rect. 18 21
504 253.78 precipitation 0.1 10 < th dose independent rect. 22 17
505 253.78 precipitation 0.1 10 < th dose dependent rect. 22 17
507 253.84 temperature 10.0 10 > th dose independent rect. 15 7
509 253.84 atmosphere 1010.0 10 < th dose independent rect. 15 7
511 253.84 temperature 10.0 10 > th dose independent rect. 22 17
512 253.84 atmosphere 995.0 10 > th dose independent rect. 22 17
513 253.86 temperature 10.0 30 > th dose independent rect. 9 6
515 253.86 atmosphere 995.0 30 > th dose independent rect. 9 6
516 253.86 atmosphere 1015.0 30 < th dose independent rect. 9 6
517 253.86 precipitation 0.1 30 < th dose independent rect. 9 6
518 253.86 temperature 10.0 30 > th dose independent rect. 15 18
519 253.86 precipitation 0.1 30 < th dose dependent rect. 9 6
529 253.95 temperature 10.0 1440 > th dose independent rect. 10 6
532 253.95 temperature 10.0 1440 > th dose independent rect. 16 18
559 254.39 radiation 1.0 30 > th dose independent rect. 9 6
565 254.56 atmosphere 1015.0 30 < th dose independent rect. 20 19
613 255.26 wind 9.0 30 < th dose independent rect. 15 7
624 255.45 humidity 50.0 30 > th dose independent rect. 9 6
649 255.86 radiation 20.0 10 < th dose independent rect. 17 16
658 256.03 temperature 10.0 1440 > th dose independent rect. 16 7
661 256.03 temperature 10.0 1440 > th dose independent rect. 23 17
675 256.31 wind 9.0 30 < th dose independent rect. 9 6
686 256.44 wind 9.0 10 < th dose independent rect. 22 17
707 256.68 atmosphere 995.0 30 > th dose independent rect. 15 18
710 256.76 atmosphere 995.0 270 > th dose independent rect. 18 21
711 256.77 wind 9.0 10 < th dose dependent rect. 15 5
718 256.82 wind 1.0 30 > th dose independent rect. 9 6
722 256.94 humidity 50.0 30 > th dose independent rect. 15 5
732 257.06 precipitation 0.1 270 < th dose independent rect. 18 21
733 257.06 precipitation 0.1 270 < th dose dependent rect. 18 21
747 257.18 radiation 20.0 10 < th dose dependent rect. 4 16
754 257.27 humidity 50.0 30 > th dose independent rect. 22 17
755 257.27 humidity 50.0 270 > th dose independent rect. 18 21
756 257.29 atmosphere 995.0 10 > th dose independent rect. 15 7
781 257.41 atmosphere 1015.0 10 < th dose independent rect. 22 17
792 257.55 precipitation 0.1 270 < th dose independent rect. 15 3
793 257.55 precipitation 0.1 270 < th dose dependent rect. 15 3
798 257.63 humidity 50.0 270 > th dose independent rect. 12 8
808 257.83 temperature 10.0 270 > th dose independent rect. 15 3
810 257.83 atmosphere 1010.0 270 < th dose independent rect. 15 3
813 257.83 temperature 10.0 270 > th dose independent rect. 18 21
881 258.47 radiation 40.0 270 < th dose independent rect. 15 3
891 258.54 wind 9.0 270 < th dose independent rect. 15 3
1000 259.88 radiation 30.0 10 < th dose independent rect. 2 9