BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0330400 Os10g0330400|AK099421
(296 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0330400 Protein of unknown function DUF179 family protein 558 e-159
Os05g0420200 Protein of unknown function DUF179 family protein 159 3e-39
Os01g0886000 Protein of unknown function DUF179 family protein 132 2e-31
>Os10g0330400 Protein of unknown function DUF179 family protein
Length = 296
Score = 558 bits (1439), Expect = e-159, Method: Compositional matrix adjust.
Identities = 280/296 (94%), Positives = 280/296 (94%)
Query: 1 METSCFLTSNASPVKSMVMPSPAGVVKARPHVLFGGRRAASSSVTTCCSYNGEGAAPAID 60
METSCFLTSNASPVKSMVMPSPAGVVKARPHVLFGGRRAASSSVTTCCSYNGEGAAPAID
Sbjct: 1 METSCFLTSNASPVKSMVMPSPAGVVKARPHVLFGGRRAASSSVTTCCSYNGEGAAPAID 60
Query: 61 PDWRSFRAQLYFNEQYAKSVNXXXXXXXXXXXXXXXXKIGDKWAHPLVEPEKGCLLIATE 120
PDWRSFRAQLYFNEQYAKSVN KIGDKWAHPLVEPEKGCLLIATE
Sbjct: 61 PDWRSFRAQLYFNEQYAKSVNPAVAAVRATATTPEPVKIGDKWAHPLVEPEKGCLLIATE 120
Query: 121 KLDGSHIFERTVVLLLSAGVLGPVGVILNRPSLMSIKEAQAVFAETDIAGAFSGRPLFFG 180
KLDGSHIFERTVVLLLSAGVLGPVGVILNRPSLMSIKEAQAVFAETDIAGAFSGRPLFFG
Sbjct: 121 KLDGSHIFERTVVLLLSAGVLGPVGVILNRPSLMSIKEAQAVFAETDIAGAFSGRPLFFG 180
Query: 181 GPLEECFFLLGPRAAAAGDVVGRTGLFDEVMPGVHYGTRESVGCAAELVKRGVVGVRDFR 240
GPLEECFFLLGPRAAAAGDVVGRTGLFDEVMPGVHYGTRESVGCAAELVKRGVVGVRDFR
Sbjct: 181 GPLEECFFLLGPRAAAAGDVVGRTGLFDEVMPGVHYGTRESVGCAAELVKRGVVGVRDFR 240
Query: 241 FFDGFCGWEREQLRDEVRAGLWRVAACSPAVLGLATVVKGGLWEEVQGLVGERRVW 296
FFDGFCGWEREQLRDEVRAGLWRVAACSPAVLGLATVVKGGLWEEVQGLVGERRVW
Sbjct: 241 FFDGFCGWEREQLRDEVRAGLWRVAACSPAVLGLATVVKGGLWEEVQGLVGERRVW 296
>Os05g0420200 Protein of unknown function DUF179 family protein
Length = 352
Score = 159 bits (401), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 97/234 (41%), Positives = 124/234 (52%), Gaps = 14/234 (5%)
Query: 63 WRSFRAQLYFNEQYAKSVNXXXXXXXXXXXXXXXXKIGDKWAHPLVEPEKGCLLIATEKL 122
WR RA L EQ V+ ++ KWAHP+ PE GC+L+ATE L
Sbjct: 113 WRDVRANLVRREQELL-VDPSAPAEQKTSSGEPAHQLPQKWAHPITMPEAGCVLVATEVL 171
Query: 123 DGSHIFERTVVLLLSAGVLG----PVGVILNRPSLMSIKEAQAVFAETDIAGAFSGRPLF 178
D IFERTV+LLL G G P GVILNRP IK F D A F PLF
Sbjct: 172 DDDSIFERTVILLLRLGSRGTFDSPFGVILNRPLYTKIKNVNPSF--QDQATPFGDSPLF 229
Query: 179 FGGPLEECFFLLGPRAAAAGDVVGRTGLFDEVMPGVHYGTRESVGCAAELVKRGVVGVRD 238
FGGP++ FL+ RA+ + G F+EV+PG+ +G R + AA L+K G + +D
Sbjct: 230 FGGPVDMSMFLV--RASDNSRLKG----FEEVIPGIRFGFRTDLEKAAVLMKSGAIKSQD 283
Query: 239 FRFFDGFCGWEREQLRDEVRAGLWRVAACSPAVLGLA-TVVKGGLWEEVQGLVG 291
RFF G W+ EQL E+RAG W VA+CS ++ A T LW E+ L+G
Sbjct: 284 LRFFVGHAAWDYEQLLSEIRAGYWAVASCSTELISDALTGDPSCLWTEILQLMG 337
>Os01g0886000 Protein of unknown function DUF179 family protein
Length = 354
Score = 132 bits (333), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 77/195 (39%), Positives = 105/195 (53%), Gaps = 13/195 (6%)
Query: 102 KWAHPLVEPEKGCLLIATEKLDGSHIFERTVVLLLSAG----VLGPVGVILNRPSLMSIK 157
KWAH + PE GC+L+A E+LDG+ FERTV+LLL G GP GVILNRP +K
Sbjct: 153 KWAHSIPMPESGCVLVAAEELDGNGTFERTVILLLRLGSRDAYDGPFGVILNRPLYTKMK 212
Query: 158 EAQAVFAETDIAGAFSGRPLFFGGPLEECFFLLGPRAAAAGDVVGRTGLFDEVMPGVHYG 217
F + A FS LFFGGP++ FL+ R + G F+EV PGV +G
Sbjct: 213 HVNPSF--RNQATPFSDCSLFFGGPVDMSIFLM--RTTDDRPIKG----FEEVSPGVCFG 264
Query: 218 TRESVGCAAELVKRGVVGVRDFRFFDGFCGWEREQLRDEVRAGLWRVAACSPAVLGLATV 277
R + A+ L+K G V D F+ G+ W+ +QL E+ G W V +CS ++ +
Sbjct: 265 FRTDLEKASALLKSGAVKPEDLNFYVGYSAWDYDQLLSEIDQGYWHVTSCSSGLISDSLA 324
Query: 278 VKGG-LWEEVQGLVG 291
LW E+ L+G
Sbjct: 325 TDPSCLWTEILKLMG 339
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.139 0.435
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,265,549
Number of extensions: 426662
Number of successful extensions: 936
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 929
Number of HSP's successfully gapped: 3
Length of query: 296
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 196
Effective length of database: 11,814,401
Effective search space: 2315622596
Effective search space used: 2315622596
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 156 (64.7 bits)