BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0865600 Os01g0865600|AK099677
(904 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0865600 Basic helix-loop-helix dimerisation region bHL... 1781 0.0
Os11g0158500 Basic helix-loop-helix dimerisation region bHL... 370 e-102
Os12g0160400 Basic helix-loop-helix dimerisation region bHL... 360 3e-99
Os02g0673500 Basic helix-loop-helix dimerisation region bHL... 279 6e-75
Os07g0101300 Basic helix-loop-helix dimerisation region bHL... 158 2e-38
>Os01g0865600 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 904
Score = 1781 bits (4614), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 866/904 (95%), Positives = 866/904 (95%)
Query: 1 MAGAAPLRDSLRRLCTDVGWSYAVFWRATRAADSQRLKLVWGDGHYERAAGAPSISGFEA 60
MAGAAPLRDSLRRLCTDVGWSYAVFWRATRAADSQRLKLVWGDGHYERAAGAPSISGFEA
Sbjct: 1 MAGAAPLRDSLRRLCTDVGWSYAVFWRATRAADSQRLKLVWGDGHYERAAGAPSISGFEA 60
Query: 61 MDLLLKEKXXXXXXXXXXXXXXXXXXXXXXXXXHSHDRVDALVHKAMAQQVHVVGEGVIG 120
MDLLLKEK HSHDRVDALVHKAMAQQVHVVGEGVIG
Sbjct: 61 MDLLLKEKAAALRSGTGRGGGGGEGHAADGAAGHSHDRVDALVHKAMAQQVHVVGEGVIG 120
Query: 121 QAALTGLHRWIVHDIXXXXXXXXXXXXXMKGQFCAGIQTIAVIPVLPRGVIQLGSTKMVM 180
QAALTGLHRWIVHDI MKGQFCAGIQTIAVIPVLPRGVIQLGSTKMVM
Sbjct: 121 QAALTGLHRWIVHDIVDECEEEDEVLLEMKGQFCAGIQTIAVIPVLPRGVIQLGSTKMVM 180
Query: 181 EEAAFIDHVRSLFQQLGSSTAVVPCGSFVQDSIMRTPFHKSLGVPTSSHSEDLAGGGNTY 240
EEAAFIDHVRSLFQQLGSSTAVVPCGSFVQDSIMRTPFHKSLGVPTSSHSEDLAGGGNTY
Sbjct: 181 EEAAFIDHVRSLFQQLGSSTAVVPCGSFVQDSIMRTPFHKSLGVPTSSHSEDLAGGGNTY 240
Query: 241 NDDMINHQFRHQKSPASTIQSFNPVQQFYAGPTFCRPVTIASRCDLFQPDHGSTFTLNSQ 300
NDDMINHQFRHQKSPASTIQSFNPVQQFYAGPTFCRPVTIASRCDLFQPDHGSTFTLNSQ
Sbjct: 241 NDDMINHQFRHQKSPASTIQSFNPVQQFYAGPTFCRPVTIASRCDLFQPDHGSTFTLNSQ 300
Query: 301 SEDNRSTALLKNSVSHSKTSNDAFSHAFNPLNEPNVSISGRRECVSIEQHGSCRNGEMEI 360
SEDNRSTALLKNSVSHSKTSNDAFSHAFNPLNEPNVSISGRRECVSIEQHGSCRNGEMEI
Sbjct: 301 SEDNRSTALLKNSVSHSKTSNDAFSHAFNPLNEPNVSISGRRECVSIEQHGSCRNGEMEI 360
Query: 361 TIGRTASSSCTGKTNIINKVDDLLSQDCLVGCQASNATSVNRKFQTMSIVDNTKLQDGSY 420
TIGRTASSSCTGKTNIINKVDDLLSQDCLVGCQASNATSVNRKFQTMSIVDNTKLQDGSY
Sbjct: 361 TIGRTASSSCTGKTNIINKVDDLLSQDCLVGCQASNATSVNRKFQTMSIVDNTKLQDGSY 420
Query: 421 AIPHAALVDSTQYSDCFQSLLGTIQGSSSSNSNAIHVDTSHNAVHGKSNFCPLGDRNAAN 480
AIPHAALVDSTQYSDCFQSLLGTIQGSSSSNSNAIHVDTSHNAVHGKSNFCPLGDRNAAN
Sbjct: 421 AIPHAALVDSTQYSDCFQSLLGTIQGSSSSNSNAIHVDTSHNAVHGKSNFCPLGDRNAAN 480
Query: 481 SSDLAELLASPIPLELTGGNDLFDVLQLQQKPNGSNNSEVNNRQSMPYGSEQAVKSLIGC 540
SSDLAELLASPIPLELTGGNDLFDVLQLQQKPNGSNNSEVNNRQSMPYGSEQAVKSLIGC
Sbjct: 481 SSDLAELLASPIPLELTGGNDLFDVLQLQQKPNGSNNSEVNNRQSMPYGSEQAVKSLIGC 540
Query: 541 VDDDFTGLITEADPDQLLDAIVSKIITGHKQNVDTSASCSTTVAGFDRPLHSDCHLYTTG 600
VDDDFTGLITEADPDQLLDAIVSKIITGHKQNVDTSASCSTTVAGFDRPLHSDCHLYTTG
Sbjct: 541 VDDDFTGLITEADPDQLLDAIVSKIITGHKQNVDTSASCSTTVAGFDRPLHSDCHLYTTG 600
Query: 601 PSSGPIFCNFASVAPVAIKTEGPAAGSRQSSSSIDKSAGCSQTQESYKSQIRLWVENNHS 660
PSSGPIFCNFASVAPVAIKTEGPAAGSRQSSSSIDKSAGCSQTQESYKSQIRLWVENNHS
Sbjct: 601 PSSGPIFCNFASVAPVAIKTEGPAAGSRQSSSSIDKSAGCSQTQESYKSQIRLWVENNHS 660
Query: 661 VGSDSLSTGQASDSLSTGQCKRSDEIGKSNRKRSRPGESARPRPKDRQMIQDRIKELREI 720
VGSDSLSTGQASDSLSTGQCKRSDEIGKSNRKRSRPGESARPRPKDRQMIQDRIKELREI
Sbjct: 661 VGSDSLSTGQASDSLSTGQCKRSDEIGKSNRKRSRPGESARPRPKDRQMIQDRIKELREI 720
Query: 721 VPNSAKCSIDTLLEKTIKHMLFLQNVAKHADKLKGSGEPKIVSHEEGLLLKDNFEGGATW 780
VPNSAKCSIDTLLEKTIKHMLFLQNVAKHADKLKGSGEPKIVSHEEGLLLKDNFEGGATW
Sbjct: 721 VPNSAKCSIDTLLEKTIKHMLFLQNVAKHADKLKGSGEPKIVSHEEGLLLKDNFEGGATW 780
Query: 781 AFEVGTRSMTCPIIVEDLNPPRQMLVEMLCKERGIFLEIADQIRGLGLTILKGVMEVRKD 840
AFEVGTRSMTCPIIVEDLNPPRQMLVEMLCKERGIFLEIADQIRGLGLTILKGVMEVRKD
Sbjct: 781 AFEVGTRSMTCPIIVEDLNPPRQMLVEMLCKERGIFLEIADQIRGLGLTILKGVMEVRKD 840
Query: 841 KIWARFAVEANKDVTRMEIFLSLVHLLEPSTGSSILSAGVENTSLPRDSFFPSSIPASGF 900
KIWARFAVEANKDVTRMEIFLSLVHLLEPSTGSSILSAGVENTSLPRDSFFPSSIPASGF
Sbjct: 841 KIWARFAVEANKDVTRMEIFLSLVHLLEPSTGSSILSAGVENTSLPRDSFFPSSIPASGF 900
Query: 901 SNCL 904
SNCL
Sbjct: 901 SNCL 904
>Os11g0158500 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 425
Score = 370 bits (949), Expect = e-102, Method: Compositional matrix adjust.
Identities = 217/423 (51%), Positives = 274/423 (64%), Gaps = 31/423 (7%)
Query: 490 SPIPLELTGGNDLFDVL--QLQQKPNGSNNSEVNNRQSMPYGSEQAVKS---------LI 538
SP+ +E + NDLFD+L Q + + V + P S++ V L
Sbjct: 18 SPLFMEQSVENDLFDILGPQFHHLCHNAGADLVPWTDAKPESSDRDVPESSIHADSAPLF 77
Query: 539 GCVDDD-FTGLITEADPDQLLDAIVSKIITGHKQNVDTSASCSTTVAGFDRPLHSDCHLY 597
D++ ++G+ + D DQLLDA++S + KQ+ D SASC T++ D P S +L
Sbjct: 78 SSRDNELYSGIFSLTDTDQLLDAVISNVNPAGKQSSDDSASCKTSLT--DIPATS--YLC 133
Query: 598 TTGPSSGPIFCNFASVAPVAIKTEGPAAGSRQSSSSIDKSAGC-SQTQESYKSQIRLWVE 656
+ C + V V IK E A +Q + + GC SQ +KSQIRLW+E
Sbjct: 134 SKEMKQ----CGSSGVPSVLIKNES-AQFIKQPCLAENAEDGCLSQNNGMHKSQIRLWIE 188
Query: 657 NNHSVGSDSLSTGQASDSLSTGQCKRSDEIGKSNRKRSRPGESARPRPKDRQMIQDRIKE 716
+ S+ +S S AS+S K D K+NRKRSRPGES +PRPKDRQ+IQDRIKE
Sbjct: 189 SGQSMKCESAS---ASNS------KGLDTPSKANRKRSRPGESPKPRPKDRQLIQDRIKE 239
Query: 717 LREIVPNSAKCSIDTLLEKTIKHMLFLQNVAKHADKLKGSGEPKIVSHEEGLLLKDNFEG 776
LRE+VPN AKCSID LLEKT+KHMLFLQ+V KHADKLK S E KI+ +E G + KD FEG
Sbjct: 240 LREMVPNGAKCSIDALLEKTVKHMLFLQSVTKHADKLKDSTESKILGNENGPVWKDYFEG 299
Query: 777 GATWAFEVGTRSMTCPIIVEDLNPPRQMLVEMLCKERGIFLEIADQIRGLGLTILKGVME 836
GATWAF+VG++SMTCPIIVEDL+ PRQMLVEM+C++RGIFLEIAD I+GLGLTIL+G ME
Sbjct: 300 GATWAFDVGSQSMTCPIIVEDLDRPRQMLVEMICEDRGIFLEIADFIKGLGLTILRGAME 359
Query: 837 VRKDKIWARFAVEANKDVTRMEIFLSLVHLLEPSTGSSILSAGVENTSLPRDSFFPSSIP 896
RK KIWARF VEAN+DVTRMEIFLSLV LLEP+ SS + N ++P IP
Sbjct: 360 ARKSKIWARFTVEANRDVTRMEIFLSLVRLLEPNCDSSGAAENANNVNMPLGLVHQPVIP 419
Query: 897 ASG 899
A+G
Sbjct: 420 ATG 422
>Os12g0160400 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 880
Score = 360 bits (923), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 210/403 (52%), Positives = 263/403 (65%), Gaps = 32/403 (7%)
Query: 483 DLAELLASPIPLELTGGNDLFDVL-----QLQQKPNGSNNSEVNNRQSMPYGSEQAVKSL 537
D++ S ++ + NDLFD+ QL + +G + QS + ++ L
Sbjct: 461 DISNERTSSFVMDPSTENDLFDIFGTDFHQLHRSLDGDLSWNTAKPQSSDRDAPESSIYL 520
Query: 538 -----IGCVDDDFT--GLITEADPDQLLDAIVSKIITGHKQNVDTSASCSTTVAGFDRPL 590
G +D+F+ G+ + D DQLLDA++S + G KQ SASC T++ D P
Sbjct: 521 DSSPAFGAQEDEFSYSGIFSLTDTDQLLDAVISNVNPGGKQISGDSASCKTSLT--DIPS 578
Query: 591 HSDCHLYTTGPSSGPIFCNFASVAPVAIKTEGPAAGSRQSSSSIDKSA-GC-SQTQESYK 648
S C T C + P+ IK E + + ++K+ GC SQ K
Sbjct: 579 TSYCGSKETKQ------CKSSGAPPLLIKNELAVSNFVKQPCFLEKAEDGCLSQNNGVQK 632
Query: 649 SQIRLWVENNHSVGSDSLSTGQASDSLSTGQCKRSDEIGKSNRKRSRPGESARPRPKDRQ 708
SQIRLW+E+ ++ +S+S AS+S K D K+NRKRSRPGES +PRPKDRQ
Sbjct: 633 SQIRLWIESGQNMKCESVS---ASNS------KGLDTANKANRKRSRPGESPKPRPKDRQ 683
Query: 709 MIQDRIKELREIVPNSAKCSIDTLLEKTIKHMLFLQNVAKHADKLKGSGEPKI-VSHEEG 767
+IQDRIKELRE+VPN AKCSID LLEKTIKHM+FLQ+V KHAD LK S E KI E G
Sbjct: 684 LIQDRIKELRELVPNGAKCSIDALLEKTIKHMVFLQSVTKHADNLKDSNESKIHGGGENG 743
Query: 768 LLLKDNFEGGATWAFEVGTRSMTCPIIVEDLNPPRQMLVEMLCKERGIFLEIADQIRGLG 827
LLKD FEGGATWAF+VG++SMTCPIIVEDL+ PRQMLVEMLC++RGIFLEIAD I+GLG
Sbjct: 744 PLLKDYFEGGATWAFDVGSQSMTCPIIVEDLDRPRQMLVEMLCEDRGIFLEIADFIKGLG 803
Query: 828 LTILKGVMEVRKDKIWARFAVEANKDVTRMEIFLSLVHLLEPS 870
LTIL+GVME RK+KIWARF VEAN+DVTRMEIFLSL+ LLEPS
Sbjct: 804 LTILRGVMEARKNKIWARFTVEANRDVTRMEIFLSLMRLLEPS 846
Score = 136 bits (343), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 82/218 (37%), Positives = 107/218 (49%), Gaps = 33/218 (15%)
Query: 9 DSLRRLCTDVGWSYAVFWRATRAADSQRLKLVWGDGHYERAAGAPSISGFEAMDLLLKEK 68
D+LRRLC + WSYAVFW+A AAD + LVW DG A+ + EA
Sbjct: 5 DALRRLCEEARWSYAVFWKAIGAADP--VHLVWEDGFCGHASCSAGSEASEA-------- 54
Query: 69 XXXXXXXXXXXXXXXXXXXXXXXXXHSHDRVDALVHKAMAQQVHVVGEGVIGQAALTGLH 128
S V LV K MA QVHVVGEG IG+AA TG H
Sbjct: 55 -----------------------GCESGGAVCTLVRKIMASQVHVVGEGTIGRAAFTGNH 91
Query: 129 RWIVHDIXXXXXXXXXXXXXMKGQFCAGIQTIAVIPVLPRGVIQLGSTKMVMEEAAFIDH 188
+WIVH+ M QF AGI+TIA+IPVLPRGV+QLGST +++E + +
Sbjct: 92 QWIVHETANDHGLRSEVAAEMNNQFRAGIKTIAIIPVLPRGVLQLGSTSVILENISSVQQ 151
Query: 189 VRSLFQQLGSSTAVVPCGSFVQDSIMRTPFHKSLGVPT 226
+ L QL + +++V S D + G+P+
Sbjct: 152 YKKLCCQLNNRSSMVASASAKNDLSQKVQSRSLHGLPS 189
>Os02g0673500 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 792
Score = 279 bits (714), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 136/205 (66%), Positives = 165/205 (80%), Gaps = 16/205 (7%)
Query: 679 QCKRSDEIGKSNRKRSRPGESARPRPKDRQMIQDRIKELREIVPNSAKCSIDTLLEKTIK 738
Q KR +E+ K +KR+RPGES RPRPKDRQ IQDR+KELREIVPNSAKCSID LL++TIK
Sbjct: 550 QVKRPEEV-KVVKKRARPGESTRPRPKDRQQIQDRVKELREIVPNSAKCSIDALLDRTIK 608
Query: 739 HMLFLQNVAKHADKLKGSGEPKIVSHEE----------GLLLKDNF-----EGGATWAFE 783
HMLFLQ+V K+A+K+K + EPK++S+++ G++LKDN GGATWA+E
Sbjct: 609 HMLFLQSVTKYAEKIKQADEPKMISNKDSGAVLKENSSGVVLKDNSSAGSNNGGATWAYE 668
Query: 784 VGTRSMTCPIIVEDLNPPRQMLVEMLCKERGIFLEIADQIRGLGLTILKGVMEVRKDKIW 843
V R+M CPII+EDL+PP QMLVEMLC+ERG FLEIAD IRG GLTILKG+ME+R KI
Sbjct: 669 VAGRTMVCPIIIEDLSPPGQMLVEMLCEERGFFLEIADTIRGFGLTILKGLMELRDGKIM 728
Query: 844 ARFAVEANKDVTRMEIFLSLVHLLE 868
ARF VEANK+VTRM+IFLSLV LL+
Sbjct: 729 ARFLVEANKNVTRMDIFLSLVQLLQ 753
Score = 70.5 bits (171), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 72/149 (48%), Gaps = 15/149 (10%)
Query: 94 HSHDRVDALVHKAMAQQVHVVGEGVIGQAALTGLHRWIVHDIXXXXXXXXXXXXXM---- 149
HS D +V K M QVHVVGEG+IG+A ++G +WI +
Sbjct: 38 HSEDGTRNVVEK-MLNQVHVVGEGIIGRALVSGECQWISDTSFSFAQTSDADNQDLFQGY 96
Query: 150 ---KGQFCAGIQTIAVIPVLPRGVIQLGSTKMVMEEAAFIDHVRSLFQQLGSSTAVVPCG 206
+ QF GI+TIAVIP+ GV Q GS + + E F+D V+ +F Q +VP
Sbjct: 97 TWWQHQFLCGIKTIAVIPIADLGVAQFGSMQKISECLEFLDQVKGIFCQ----REIVPW- 151
Query: 207 SFVQDSIMRT--PFHKSLGVPTSSHSEDL 233
+ I R P+H+ + + S ++ L
Sbjct: 152 DLSAEEIQRNVLPYHQQFQLSSLSSADGL 180
>Os07g0101300 Basic helix-loop-helix dimerisation region bHLH domain containing
protein
Length = 577
Score = 158 bits (400), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 82/179 (45%), Positives = 121/179 (67%), Gaps = 22/179 (12%)
Query: 691 RKRSRPGESARPRPKDRQMIQDRIKELREIVPNSAKCSIDTLLEKTIKHMLFLQNVAKHA 750
+ R R RPRP+DRQ+IQDR+ ELR++VPN++KCSID+LL+KTI HM FLQ V++ A
Sbjct: 415 KGRCRKTGLHRPRPRDRQLIQDRMMELRQLVPNTSKCSIDSLLDKTIAHMQFLQCVSEKA 474
Query: 751 DKLKGSGEPKIVSHEEGLLLKDNFEGGATWAFEVGTRSMTCPIIVEDLNPP-RQMLVEML 809
DKL+ KI++ E G+T + +CP+ VE L+ P +L+EM+
Sbjct: 475 DKLE-----KIINSE-----------GST-----KRQPGSCPLKVEVLDQPGHLLLIEMV 513
Query: 810 CKERGIFLEIADQIRGLGLTILKGVMEVRKDKIWARFAVEANKDVTRMEIFLSLVHLLE 868
C+E G+FLEIA ++ L +TILKG++E R DK+WARF ++A++ +M+I L+HLL+
Sbjct: 514 CEEYGVFLEIAHVMKDLEVTILKGLLESRSDKLWARFVIQASQGFDQMQILYPLMHLLQ 572
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.130 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 29,755,824
Number of extensions: 1224915
Number of successful extensions: 3316
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 3305
Number of HSP's successfully gapped: 7
Length of query: 904
Length of database: 17,035,801
Length adjustment: 110
Effective length of query: 794
Effective length of database: 11,292,261
Effective search space: 8966055234
Effective search space used: 8966055234
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 161 (66.6 bits)