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Os12g0160400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Basic helix-loop-helix dimerisation region bHLH domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.2 (0.0169) R2 : 0.00808
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0687 (0.0357) R2dN8 : 0.0104 R2N8 : 0.00808
σ : 0.319
deviance : 46.71
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
15.29 0.184 12.2 0.86 0.378 0.316 -0.153 -0.776 0.0931 20.1 2.298 1456 -- --
15.82 0.185 12.2 0.881 0.393 0.296 -0.127 -- 0.0974 19.9 3.215 3134 -- --
15.35 0.182 12.2 0.864 0.377 0.311 -- -0.746 0.0929 20.2 2.273 1455 -- --
15.81 0.185 12.2 0.886 0.392 0.282 -- -- 0.105 20 3.1 3136 -- --
22.67 0.223 12.2 0.986 -- -0.185 -- 0.536 0.0369 -- 2.4 1382 -- --
16.53 0.191 12.2 0.94 0.355 -- -0.0469 -- 0.0396 20.1 -- -- -- --
16.53 0.19 12.2 0.941 0.355 -- -- -- 0.0395 20.2 -- -- -- --
22.8 0.222 12.2 0.855 -- 0.262 -- -- 0.067 -- 11.49 4284 -- --
23.81 0.227 12.3 -- 0.355 0.864 -- -- -0.189 20.1 12.6 47520 -- --
23.48 0.226 12.2 0.938 -- -- -- -- 0.0354 -- -- -- -- --
39.88 0.295 12.3 -- 0.35 -- -- -- -0.0653 20.4 -- -- -- --
30.7 0.258 12.3 -- -- 0.861 -- -- -0.187 -- 19.51 47520 -- --
46.71 0.319 12.2 -- -- -- -- -- -0.0687 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 14.00 atmosphere 1000.0 270 > th dose dependent rect. 24 4
2 14.05 wind 1.0 270 > th dose independent rect. 23 5
7 14.20 atmosphere 1005.0 270 > th dose independent rect. 23 6
20 14.38 atmosphere 1000.0 10 > th dose dependent rect. 24 7
24 14.41 temperature 30.0 270 < th dose dependent rect. 24 4
33 14.43 temperature 10.0 270 > th dose dependent rect. 19 13
45 14.49 temperature 30.0 90 < th dose dependent rect. 24 11
47 14.50 wind 1.0 270 > th dose independent rect. 24 15
49 14.51 wind 9.0 270 < th dose independent rect. 4 20
51 14.52 wind 9.0 4320 < th dose independent rect. 2 4
55 14.52 temperature 30.0 10 < th dose dependent rect. 24 10
64 14.56 temperature 25.0 90 < th dose independent rect. 24 11
72 14.59 precipitation 0.1 270 < th dose independent rect. 24 4
74 14.59 wind 3.0 1440 < th dose dependent rect. 6 2
76 14.59 precipitation 0.1 270 < th dose dependent rect. 24 4
81 14.60 wind 7.0 270 < th dose independent rect. 24 4
82 14.60 atmosphere 1005.0 10 > th dose independent rect. 24 8
84 14.60 wind 9.0 270 < th dose independent rect. 14 10
90 14.61 wind 1.0 270 > th dose independent rect. 14 14
95 14.61 temperature 30.0 10 < th dose dependent rect. 24 7
98 14.62 temperature 15.0 270 > th dose independent rect. 23 5
101 14.62 atmosphere 995.0 270 > th dose independent rect. 4 20
102 14.62 precipitation 0.1 270 < th dose independent rect. 4 20
108 14.62 precipitation 0.1 270 < th dose dependent rect. 4 20
114 14.63 temperature 30.0 270 < th dose independent rect. 24 4
115 14.63 humidity 50.0 270 > th dose independent rect. 24 4
118 14.63 atmosphere 995.0 270 > th dose independent rect. 24 4
119 14.63 atmosphere 1010.0 270 < th dose independent rect. 24 4
121 14.63 radiation 1.0 270 < th dose independent rect. 24 4
127 14.63 temperature 10.0 270 > th dose independent rect. 4 20
128 14.63 radiation 1.0 270 < th dose dependent rect. 24 4
137 14.64 radiation 40.0 270 < th dose independent rect. 13 11
163 14.66 precipitation 0.1 270 < th dose independent rect. 24 14
174 14.66 precipitation 0.1 270 < th dose dependent rect. 24 14
191 14.68 humidity 50.0 720 > th dose dependent rect. 20 5
209 14.71 wind 1.0 720 > th dose independent rect. 9 19
217 14.72 precipitation 0.1 270 < th dose independent rect. 14 10
225 14.72 precipitation 0.1 270 < th dose dependent rect. 14 10
228 14.73 temperature 10.0 1440 > th dose independent rect. 1 5
231 14.73 temperature 30.0 1440 < th dose independent rect. 1 5
235 14.73 humidity 50.0 1440 > th dose independent rect. 1 5
244 14.73 atmosphere 995.0 1440 > th dose independent rect. 1 5
245 14.73 radiation 20.0 1440 < th dose independent rect. 1 5
258 14.73 temperature 10.0 1440 > th dose independent rect. 6 19
268 14.73 wind 9.0 270 < th dose dependent rect. 14 10
287 14.74 temperature 10.0 270 > th dose independent rect. 14 10
288 14.74 temperature 10.0 270 > th dose independent rect. 24 14
289 14.74 atmosphere 995.0 270 > th dose independent rect. 24 14
290 14.74 atmosphere 1015.0 270 < th dose independent rect. 24 14
302 14.74 wind 3.0 1440 < th dose dependent rect. 3 7
303 14.74 radiation 1.0 270 < th dose dependent rect. 23 11
306 14.75 wind 1.0 10 > th dose independent rect. 1 4
333 14.76 atmosphere 995.0 270 > th dose independent rect. 14 10
340 14.76 humidity 50.0 270 > th dose independent rect. 4 19
365 14.77 wind 9.0 720 < th dose dependent rect. 4 5
374 14.78 temperature 20.0 90 < th dose independent rect. 1 4
375 14.78 humidity 80.0 720 > th dose independent rect. 20 4
378 14.78 humidity 50.0 270 > th dose independent rect. 24 14
379 14.78 wind 1.0 720 > th dose independent rect. 9 17
386 14.79 wind 1.0 4320 < th dose independent rect. 6 1
401 14.79 radiation 1.0 270 < th dose independent rect. 23 12
410 14.79 radiation 20.0 10 < th dose dependent rect. 24 10
418 14.80 wind 7.0 270 < th dose independent rect. 18 14
428 14.80 radiation 30.0 90 < th dose dependent rect. 24 10
429 14.80 wind 9.0 270 < th dose dependent rect. 5 18
482 14.82 wind 9.0 4320 < th dose independent rect. 2 6
489 14.82 wind 9.0 270 < th dose independent rect. 24 14
496 14.82 radiation 20.0 10 < th dose dependent rect. 24 7
497 14.82 wind 3.0 1440 < th dose dependent rect. 1 9
509 14.83 wind 9.0 90 < th dose independent rect. 7 17
543 14.85 wind 1.0 4320 > th dose independent rect. 6 1
546 14.85 wind 1.0 720 > th dose independent rect. 17 11
549 14.85 wind 9.0 10 < th dose independent rect. 7 17
552 14.85 atmosphere 1015.0 270 < th dose independent rect. 4 19
556 14.85 temperature 10.0 270 > th dose dependent rect. 17 7
572 14.86 atmosphere 995.0 10 > th dose independent rect. 7 17
587 14.86 wind 9.0 90 < th dose dependent rect. 7 17
620 14.87 precipitation 0.1 10 < th dose independent rect. 24 7
621 14.87 precipitation 0.1 90 < th dose independent rect. 7 17
625 14.87 radiation 1.0 270 < th dose independent rect. 4 20
644 14.87 precipitation 0.1 10 < th dose dependent rect. 24 7
647 14.87 radiation 40.0 270 < th dose dependent rect. 13 11
650 14.87 precipitation 0.1 90 < th dose dependent rect. 7 17
660 14.88 wind 1.0 270 > th dose independent rect. 9 9
666 14.88 wind 1.0 10 > th dose independent rect. 5 19
668 14.88 humidity 60.0 720 > th dose dependent rect. 21 1
697 14.89 precipitation 0.1 10 < th dose independent rect. 7 17
709 14.89 wind 9.0 720 < th dose dependent rect. 4 7
721 14.89 precipitation 0.1 10 < th dose dependent rect. 7 17
723 14.90 wind 9.0 4320 < th dose independent rect. 4 2
725 14.90 wind 1.0 14400 < th dose independent rect. 24 4
738 14.90 temperature 15.0 10 > th dose independent rect. 24 7
741 14.90 radiation 1.0 270 < th dose independent rect. 23 8
744 14.90 temperature 10.0 270 > th dose independent rect. 8 10
745 14.90 humidity 50.0 270 > th dose independent rect. 14 10
746 14.90 atmosphere 1015.0 270 < th dose independent rect. 8 10
749 14.90 temperature 10.0 270 > th dose independent rect. 18 14
750 14.90 humidity 50.0 270 > th dose independent rect. 18 14
785 14.91 wind 9.0 10 < th dose independent rect. 24 7
789 14.91 temperature 30.0 10 < th dose independent rect. 24 7
790 14.91 humidity 50.0 10 > th dose independent rect. 24 7
793 14.91 atmosphere 995.0 10 > th dose independent rect. 24 7
795 14.91 atmosphere 1015.0 10 < th dose independent rect. 24 7
796 14.91 radiation 20.0 10 < th dose independent rect. 24 7
805 14.91 atmosphere 995.0 270 > th dose independent rect. 18 14
806 14.91 radiation 40.0 270 < th dose independent rect. 18 14
807 14.91 temperature 10.0 10 > th dose independent rect. 7 17
817 14.91 wind 7.0 720 < th dose dependent rect. 4 9
826 14.91 radiation 1.0 270 < th dose dependent rect. 4 20
837 14.92 temperature 10.0 1440 > th dose independent rect. 1 7
843 14.92 temperature 30.0 1440 < th dose independent rect. 1 7
850 14.92 humidity 50.0 1440 > th dose independent rect. 1 7
863 14.92 atmosphere 995.0 1440 > th dose independent rect. 1 7
878 14.92 wind 1.0 720 > th dose independent rect. 17 9
885 14.92 temperature 10.0 1440 > th dose independent rect. 8 17
929 14.93 atmosphere 1005.0 720 > th dose independent rect. 20 6
940 14.93 temperature 30.0 270 < th dose independent rect. 19 13
945 14.93 temperature 20.0 270 > th dose independent rect. 18 14
963 14.93 wind 9.0 270 < th dose dependent rect. 24 4
994 14.94 humidity 90.0 270 < th dose independent rect. 24 6