Os02g0673500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Basic helix-loop-helix dimerisation region bHLH domain containing protein.
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Os02g0673500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Basic helix-loop-helix dimerisation region bHLH domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 173.6 | 0.619 | 10.9 | 1.63 | 1.13 | 2.11 | -1.17 | -5.58 | -0.289 | 14 | 29.9 | 580 | -- | -- |
| 186.79 | 0.637 | 10.9 | 2.18 | 1.13 | 2.11 | -1.17 | -- | -0.289 | 14 | 29.9 | 580 | -- | -- |
| 178.79 | 0.623 | 10.9 | 1.61 | 1.13 | 2.08 | -- | -5.51 | -0.288 | 14 | 29.9 | 583 | -- | -- |
| 191.97 | 0.645 | 10.9 | 2.18 | 1.13 | 2.11 | -- | -- | -0.289 | 13.5 | 29.9 | 580 | -- | -- |
| 237.21 | 0.717 | 10.9 | 1.54 | -- | 2.08 | -- | -4.46 | -0.472 | -- | 29.57 | 361 | -- | -- |
| 219.56 | 0.695 | 10.9 | 2.32 | 1.41 | -- | -0.859 | -- | -0.327 | 15.3 | -- | -- | -- | -- |
| 221.88 | 0.698 | 10.9 | 2.3 | 1.41 | -- | -- | -- | -0.332 | 15.3 | -- | -- | -- | -- |
| 235.07 | 0.714 | 10.9 | 2.03 | -- | 1.56 | -- | -- | -0.498 | -- | 28.7 | 448 | -- | -- |
| 292.17 | 0.796 | 10.9 | -- | 1.1 | 1.9 | -- | -- | -0.47 | 13.6 | 29.79 | 624 | -- | -- |
| 333.82 | 0.854 | 10.9 | 2.24 | -- | -- | -- | -- | -0.369 | -- | -- | -- | -- | -- |
| 361.84 | 0.89 | 10.9 | -- | 1.36 | -- | -- | -- | -0.589 | 15.3 | -- | -- | -- | -- |
| 336.97 | 0.855 | 11 | -- | -- | 1.66 | -- | -- | -0.799 | -- | 28.22 | 432 | -- | -- |
| 466.73 | 1.01 | 10.9 | -- | -- | -- | -- | -- | -0.618 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 162.39 | temperature | 30 | 270 | < th | dose independent | rect. | 7 | 22 |
| 2 | 163.44 | temperature | 30 | 270 | < th | dose independent | rect. | 8 | 20 |
| 4 | 164.44 | temperature | 30 | 270 | < th | dose independent | rect. | 9 | 18 |
| 9 | 166.41 | temperature | 10 | 270 | > th | dose dependent | rect. | 12 | 11 |
| 16 | 169.39 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 20 |
| 20 | 170.25 | temperature | 25 | 10 | > th | dose dependent | sin | 12 | NA |
| 26 | 170.71 | temperature | 30 | 720 | < th | dose independent | rect. | 8 | 12 |
| 37 | 171.29 | temperature | 30 | 720 | < th | dose independent | rect. | 8 | 5 |
| 38 | 171.34 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 14 |
| 41 | 171.48 | temperature | 30 | 270 | < th | dose independent | rect. | 15 | 12 |
| 42 | 171.54 | temperature | 25 | 720 | > th | dose dependent | rect. | 12 | 1 |
| 44 | 171.74 | temperature | 25 | 720 | > th | dose dependent | rect. | 11 | 5 |
| 45 | 171.75 | temperature | 25 | 720 | > th | dose dependent | rect. | 12 | 3 |
| 63 | 172.37 | temperature | 25 | 90 | > th | dose dependent | rect. | 17 | 16 |
| 66 | 172.50 | temperature | 25 | 720 | > th | dose dependent | rect. | 5 | 11 |
| 98 | 173.24 | temperature | 25 | 270 | > th | dose dependent | rect. | 14 | 18 |
| 158 | 174.62 | temperature | 25 | 270 | > th | dose dependent | sin | 16 | NA |
| 164 | 174.79 | temperature | 25 | 270 | > th | dose dependent | rect. | 12 | 21 |
| 165 | 174.81 | temperature | 10 | 720 | > th | dose dependent | rect. | 11 | 6 |
| 170 | 174.91 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 2 |
| 171 | 174.91 | humidity | 50 | 270 | > th | dose independent | rect. | 6 | 23 |
| 186 | 175.13 | temperature | 15 | 270 | > th | dose dependent | rect. | 14 | 18 |
| 188 | 175.20 | temperature | 25 | 720 | > th | dose dependent | sin | 2 | NA |
| 197 | 175.48 | temperature | 30 | 720 | > th | dose independent | rect. | 9 | 7 |
| 263 | 175.94 | temperature | 30 | 720 | < th | dose independent | rect. | 15 | 21 |
| 303 | 176.36 | temperature | 30 | 720 | < th | dose independent | rect. | 2 | 9 |
| 324 | 176.71 | temperature | 30 | 720 | < th | dose independent | sin | 3 | NA |
| 346 | 176.82 | temperature | 30 | 720 | > th | dose independent | sin | 2 | NA |
| 458 | 177.58 | temperature | 30 | 720 | < th | dose independent | rect. | 13 | 23 |
| 519 | 177.90 | humidity | 60 | 270 | > th | dose independent | rect. | 16 | 11 |
| 545 | 178.09 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 20 |
| 560 | 178.25 | humidity | 60 | 270 | > th | dose independent | rect. | 8 | 20 |
| 566 | 178.31 | radiation | 1 | 270 | < th | dose independent | rect. | 15 | 13 |
| 568 | 178.32 | temperature | 30 | 270 | > th | dose independent | sin | 16 | NA |
| 578 | 178.42 | radiation | 40 | 720 | > th | dose dependent | sin | 13 | NA |
| 585 | 178.51 | atmosphere | 1005 | 270 | < th | dose independent | rect. | 17 | 1 |
| 600 | 178.61 | temperature | 30 | 270 | > th | dose independent | rect. | 14 | 21 |
| 621 | 178.74 | temperature | 30 | 270 | < th | dose independent | sin | 16 | NA |
| 688 | 179.21 | temperature | 30 | 720 | > th | dose independent | no | NA | NA |
| 781 | 179.22 | temperature | 30 | 270 | > th | dose independent | rect. | 14 | 5 |
| 834 | 179.36 | temperature | 30 | 720 | < th | dose independent | no | NA | NA |
| 835 | 179.36 | radiation | 10 | 270 | < th | dose dependent | rect. | 15 | 13 |
| 906 | 179.63 | temperature | 25 | 90 | > th | dose dependent | rect. | 17 | 7 |
| 908 | 179.64 | temperature | 25 | 90 | > th | dose dependent | rect. | 17 | 9 |
| 917 | 179.72 | temperature | 30 | 720 | > th | dose independent | rect. | 11 | 23 |
| 986 | 180.02 | temperature | 30 | 720 | > th | dose independent | rect. | 14 | 23 |