Os11g0158500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Basic helix-loop-helix dimerisation region bHLH domain containing protein.
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Os11g0158500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Basic helix-loop-helix dimerisation region bHLH domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.99 | 0.266 | 9.79 | 0.491 | 1.21 | 0.356 | 0.33 | -0.337 | -0.752 | 5.23 | 72.3 | 1345 | -- | -- |
| 32.12 | 0.264 | 9.79 | 0.514 | 1.21 | 0.326 | 0.314 | -- | -0.754 | 5.24 | 73.99 | 1330 | -- | -- |
| 32.26 | 0.265 | 9.79 | 0.494 | 1.21 | 0.359 | -- | -0.304 | -0.753 | 5.25 | 72.49 | 1344 | -- | -- |
| 32.37 | 0.265 | 9.79 | 0.514 | 1.21 | 0.328 | -- | -- | -0.758 | 5.27 | 74 | 1330 | -- | -- |
| 92.58 | 0.451 | 9.81 | 0.607 | -- | -0.841 | -- | -0.625 | -0.762 | -- | 91.63 | 1263 | -- | -- |
| 34.59 | 0.276 | 9.79 | 0.574 | 1.23 | -- | 0.373 | -- | -0.785 | 5.15 | -- | -- | -- | -- |
| 34.94 | 0.277 | 9.79 | 0.574 | 1.23 | -- | -- | -- | -0.787 | 5.17 | -- | -- | -- | -- |
| 93.33 | 0.452 | 9.81 | 0.615 | -- | -0.861 | -- | -- | -0.761 | -- | 91.63 | 1263 | -- | -- |
| 39.09 | 0.291 | 9.79 | -- | 1.19 | 0.42 | -- | -- | -0.778 | 5.24 | 71 | 1339 | -- | -- |
| 114.38 | 0.5 | 9.81 | 0.618 | -- | -- | -- | -- | -0.756 | -- | -- | -- | -- | -- |
| 43.63 | 0.309 | 9.81 | -- | 1.24 | -- | -- | -- | -0.851 | 5.16 | -- | -- | -- | -- |
| 103.3 | 0.475 | 9.82 | -- | -- | -0.863 | -- | -- | -0.829 | -- | 91.63 | 1263 | -- | -- |
| 124.44 | 0.521 | 9.82 | -- | -- | -- | -- | -- | -0.824 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.29 | temperature | 20.0 | 720 | > th | dose independent | rect. | 5 | 2 |
| 2 | 30.31 | temperature | 20.0 | 720 | > th | dose independent | rect. | 5 | 5 |
| 3 | 30.36 | atmosphere | 1000.0 | 30 | > th | dose dependent | rect. | 4 | 8 |
| 4 | 30.37 | temperature | 20.0 | 720 | > th | dose independent | rect. | 5 | 10 |
| 5 | 30.39 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 7 | 9 |
| 7 | 30.43 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 4 | 8 |
| 13 | 30.52 | temperature | 20.0 | 720 | > th | dose independent | rect. | 5 | 8 |
| 17 | 30.56 | atmosphere | 1005.0 | 270 | > th | dose dependent | rect. | 24 | 11 |
| 21 | 30.58 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 2 | 10 |
| 24 | 30.61 | wind | 7.0 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 27 | 30.62 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 3 |
| 35 | 30.66 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 7 | 4 |
| 38 | 30.67 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 24 | 12 |
| 39 | 30.68 | wind | 7.0 | 4320 | < th | dose independent | rect. | 17 | 2 |
| 69 | 30.80 | atmosphere | 1005.0 | 270 | > th | dose dependent | sin | 7 | NA |
| 73 | 30.81 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 5 | 2 |
| 82 | 30.84 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 11 | 1 |
| 94 | 30.87 | temperature | 30.0 | 270 | < th | dose dependent | sin | 0 | NA |
| 105 | 30.89 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 17 | 3 |
| 110 | 30.90 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 2 | 10 |
| 127 | 30.94 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 5 | 10 |
| 157 | 31.01 | humidity | 80.0 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 168 | 31.03 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 17 | 8 |
| 169 | 31.03 | wind | 7.0 | 720 | < th | dose independent | rect. | 17 | 12 |
| 172 | 31.03 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 17 | 8 |
| 176 | 31.04 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 5 | 23 |
| 178 | 31.05 | temperature | 20.0 | 720 | < th | dose independent | rect. | 3 | 8 |
| 182 | 31.05 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 24 | 14 |
| 183 | 31.06 | wind | 7.0 | 4320 | > th | dose independent | rect. | 15 | 5 |
| 184 | 31.06 | temperature | 20.0 | 720 | < th | dose independent | rect. | 4 | 6 |
| 190 | 31.07 | humidity | 90.0 | 720 | > th | dose independent | rect. | 21 | 2 |
| 191 | 31.07 | wind | 7.0 | 4320 | < th | dose independent | rect. | 15 | 5 |
| 193 | 31.07 | temperature | 20.0 | 720 | < th | dose independent | rect. | 3 | 10 |
| 211 | 31.09 | temperature | 20.0 | 720 | < th | dose independent | rect. | 5 | 4 |
| 220 | 31.10 | atmosphere | 1010.0 | 720 | > th | dose independent | rect. | 7 | 1 |
| 243 | 31.12 | temperature | 20.0 | 720 | < th | dose independent | sin | 4 | NA |
| 262 | 31.13 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 4 | 1 |
| 282 | 31.15 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 15 | 4 |
| 300 | 31.17 | wind | 9.0 | 720 | < th | dose independent | rect. | 17 | 8 |
| 319 | 31.19 | temperature | 25.0 | 270 | < th | dose independent | rect. | 8 | 5 |
| 325 | 31.19 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 7 | 5 |
| 329 | 31.20 | temperature | 20.0 | 720 | < th | dose independent | rect. | 5 | 2 |
| 337 | 31.20 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 16 | 8 |
| 359 | 31.22 | atmosphere | 1010.0 | 720 | < th | dose independent | rect. | 5 | 12 |
| 363 | 31.22 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 24 | 16 |
| 377 | 31.24 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 2 | 5 |
| 405 | 31.26 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 19 | 5 |
| 413 | 31.26 | atmosphere | 1005.0 | 270 | > th | dose dependent | rect. | 24 | 21 |
| 417 | 31.27 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 17 | 12 |
| 426 | 31.27 | atmosphere | 1005.0 | 720 | > th | dose dependent | rect. | 23 | 6 |
| 429 | 31.27 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 17 | 12 |
| 477 | 31.31 | atmosphere | 1005.0 | 90 | > th | dose dependent | rect. | 24 | 23 |
| 494 | 31.32 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 499 | 31.33 | atmosphere | 1005.0 | 720 | > th | dose dependent | rect. | 23 | 4 |
| 508 | 31.34 | temperature | 20.0 | 30 | > th | dose independent | rect. | 12 | 16 |
| 539 | 31.37 | wind | 1.0 | 270 | < th | dose independent | rect. | 23 | 1 |
| 566 | 31.38 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 18 | 18 |
| 567 | 31.38 | atmosphere | 1005.0 | 90 | > th | dose dependent | rect. | 2 | 21 |
| 569 | 31.39 | humidity | 80.0 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 584 | 31.40 | humidity | 60.0 | 1440 | > th | dose independent | rect. | 14 | 2 |
| 590 | 31.40 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 601 | 31.40 | wind | 9.0 | 4320 | < th | dose dependent | rect. | 17 | 12 |
| 609 | 31.40 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 24 | 23 |
| 616 | 31.41 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 4 | 2 |
| 625 | 31.41 | wind | 1.0 | 4320 | > th | dose dependent | rect. | 17 | 12 |
| 660 | 31.43 | atmosphere | 1005.0 | 720 | > th | dose independent | rect. | 18 | 11 |
| 678 | 31.44 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 15 | 14 |
| 683 | 31.44 | atmosphere | 1005.0 | 270 | > th | dose dependent | rect. | 7 | 2 |
| 691 | 31.44 | atmosphere | 1010.0 | 270 | < th | dose dependent | rect. | 21 | 10 |
| 697 | 31.44 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 15 | 14 |
| 699 | 31.45 | atmosphere | 1010.0 | 720 | > th | dose independent | rect. | 7 | 6 |
| 744 | 31.47 | temperature | 30.0 | 30 | < th | dose independent | rect. | 4 | 8 |
| 764 | 31.48 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 24 | 12 |
| 779 | 31.49 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 4 | 1 |
| 814 | 31.51 | wind | 5.0 | 30 | < th | dose independent | rect. | 4 | 1 |
| 818 | 31.51 | atmosphere | 1005.0 | 720 | > th | dose independent | rect. | 21 | 8 |
| 820 | 31.51 | temperature | 25.0 | 270 | > th | dose independent | rect. | 8 | 9 |
| 822 | 31.51 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 4 | 1 |
| 826 | 31.51 | atmosphere | 1000.0 | 30 | > th | dose dependent | rect. | 4 | 1 |
| 846 | 31.52 | temperature | 25.0 | 30 | > th | dose independent | rect. | 1 | 5 |
| 848 | 31.52 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 17 | 10 |
| 863 | 31.52 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 17 | 10 |
| 873 | 31.53 | humidity | 90.0 | 720 | < th | dose independent | rect. | 17 | 6 |
| 877 | 31.53 | wind | 7.0 | 30 | < th | dose dependent | rect. | 4 | 1 |
| 892 | 31.53 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 4 | 17 |
| 896 | 31.53 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 24 | 21 |
| 908 | 31.54 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 910 | 31.54 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 4 | 1 |
| 930 | 31.55 | temperature | 10.0 | 30 | > th | dose independent | rect. | 4 | 1 |
| 932 | 31.55 | temperature | 30.0 | 30 | < th | dose independent | rect. | 4 | 1 |
| 933 | 31.55 | humidity | 50.0 | 30 | > th | dose independent | rect. | 4 | 1 |
| 937 | 31.55 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 4 | 1 |
| 939 | 31.55 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 4 | 1 |
| 941 | 31.55 | radiation | 1.0 | 30 | < th | dose independent | rect. | 4 | 1 |
| 951 | 31.55 | temperature | 10.0 | 30 | > th | dose independent | rect. | 5 | 23 |
| 954 | 31.55 | atmosphere | 1000.0 | 720 | > th | dose dependent | rect. | 4 | 1 |
| 955 | 31.55 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 4 | 1 |
| 985 | 31.56 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 4 | 1 |
| 1000 | 31.56 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 4 | 1 |