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Os01g0865600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Basic helix-loop-helix dimerisation region bHLH domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.4 (0.0126) R2 : 0.422
β1 : 0.783 (0.046) R2dD : 0.38 R2D : 0.26
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.262 (0.0268) R2dN8 : 0.162 R2N8 : 0.0424
σ : 0.236
deviance : 25.5
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
20.12 0.211 10.4 1.24 0.175 -0.547 -0.584 1.77 0.442 17 19.83 358 -- --
21.83 0.218 10.4 0.98 0.00355 -0.43 -0.303 -- 0.354 17.2 14.89 2370 -- --
20.64 0.212 10.4 1.15 0.17 -0.521 -- 1.29 0.412 16 19.81 369 -- --
21.7 0.217 10.4 0.919 0.0162 -0.49 -- -- 0.342 1.45 13.94 934 -- --
20.85 0.213 10.4 1.2 -- -0.413 -- 1.11 0.421 -- 18.7 1147 -- --
24.95 0.234 10.4 0.774 0.0714 -- 0.278 -- 0.262 9.02 -- -- -- --
25.18 0.235 10.4 0.784 0.0726 -- -- -- 0.263 10.4 -- -- -- --
21.71 0.217 10.4 0.916 -- -0.488 -- -- 0.34 -- 14.15 883 -- --
40.28 0.296 10.5 -- 0.0666 -0.225 -- -- 0.169 13.5 27.59 488 -- --
25.5 0.236 10.4 0.783 -- -- -- -- 0.262 -- -- -- -- --
41.38 0.301 10.5 -- 0.0697 -- -- -- 0.175 9.58 -- -- -- --
40.28 0.296 10.5 -- -- -0.231 -- -- 0.156 -- 28.87 728 -- --
41.67 0.301 10.5 -- -- -- -- -- 0.175 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 18.08 humidity 80.0 14400 > th dose independent rect. 17 1
2 18.17 humidity 90.0 14400 < th dose independent rect. 21 1
3 18.23 humidity 80.0 14400 < th dose independent rect. 17 1
4 18.26 humidity 90.0 14400 > th dose independent rect. 21 1
8 18.40 atmosphere 995.0 43200 < th dose dependent rect. 15 1
10 18.44 humidity 80.0 14400 > th dose dependent rect. 18 1
11 18.48 atmosphere 995.0 43200 < th dose independent rect. 14 1
19 18.57 humidity 90.0 14400 > th dose dependent rect. 21 2
28 18.61 humidity 90.0 14400 < th dose independent rect. 18 5
30 18.63 atmosphere 995.0 43200 > th dose independent rect. 12 4
33 18.64 atmosphere 995.0 43200 > th dose independent rect. 12 1
36 18.65 atmosphere 995.0 43200 > th dose independent rect. 14 1
59 18.71 humidity 80.0 14400 > th dose dependent rect. 18 5
87 18.77 humidity 80.0 43200 < th dose independent rect. 23 1
122 18.83 humidity 80.0 43200 > th dose independent rect. 23 2
163 18.88 atmosphere 995.0 43200 > th dose independent sin 22 NA
194 18.90 atmosphere 995.0 43200 < th dose independent sin 22 NA
212 18.90 wind 9.0 43200 > th dose dependent rect. 20 1
247 18.93 humidity 80.0 14400 > th dose independent rect. 10 10
259 18.94 wind 9.0 43200 < th dose independent rect. 20 1
271 18.95 wind 9.0 43200 > th dose independent rect. 20 1
274 18.95 wind 3.0 43200 > th dose independent rect. 3 13
278 18.96 wind 3.0 43200 < th dose independent rect. 3 13
296 18.98 wind 5.0 43200 < th dose dependent rect. 4 12
301 18.99 wind 9.0 43200 > th dose dependent rect. 20 4
322 19.02 humidity 80.0 43200 < th dose dependent rect. 23 1
338 19.03 wind 9.0 43200 > th dose dependent rect. 20 7
349 19.05 wind 1.0 43200 > th dose independent rect. 8 2
380 19.07 wind 1.0 43200 > th dose dependent rect. 6 1
381 19.07 wind 9.0 43200 < th dose dependent rect. 6 1
390 19.08 wind 5.0 43200 < th dose dependent sin 2 NA
408 19.10 wind 3.0 43200 > th dose independent sin 2 NA
425 19.11 wind 3.0 43200 < th dose independent sin 3 NA
489 19.16 wind 1.0 43200 > th dose dependent rect. 4 12
492 19.16 wind 1.0 43200 > th dose dependent rect. 24 17
532 19.19 radiation 1.0 14400 > th dose independent rect. 18 12
584 19.21 wind 3.0 43200 < th dose dependent rect. 24 13
595 19.22 humidity 80.0 43200 > th dose independent rect. 22 9
601 19.22 wind 9.0 43200 > th dose dependent sin 13 NA
625 19.23 wind 1.0 43200 > th dose dependent sin 2 NA
650 19.24 wind 9.0 43200 > th dose independent rect. 18 20
674 19.25 wind 9.0 43200 > th dose dependent rect. 20 11
688 19.26 wind 9.0 43200 < th dose independent rect. 18 20
715 19.27 radiation 1.0 14400 < th dose independent rect. 18 12
752 19.28 wind 1.0 43200 > th dose dependent rect. 15 19
760 19.28 wind 1.0 43200 > th dose dependent rect. 15 21
784 19.30 precipitation 0.1 14400 > th dose independent rect. 16 8
785 19.30 precipitation 0.1 14400 < th dose independent rect. 16 8
794 19.30 precipitation 0.1 14400 < th dose dependent rect. 16 8
802 19.30 wind 9.0 43200 > th dose dependent rect. 9 12
815 19.30 wind 1.0 43200 > th dose dependent rect. 18 22
827 19.31 humidity 90.0 14400 < th dose dependent rect. 17 1
867 19.32 wind 9.0 43200 < th dose dependent rect. 15 19
871 19.32 wind 1.0 43200 > th dose dependent rect. 20 21
873 19.32 wind 9.0 43200 < th dose dependent rect. 15 21
902 19.33 wind 9.0 43200 < th dose dependent rect. 18 22
924 19.34 atmosphere 1000.0 43200 < th dose dependent rect. 12 1
935 19.34 wind 9.0 43200 > th dose dependent rect. 9 14
936 19.34 wind 9.0 43200 > th dose dependent rect. 17 15
961 19.35 wind 3.0 43200 > th dose independent rect. 20 20
974 19.35 wind 9.0 43200 > th dose dependent rect. 9 16
977 19.35 wind 9.0 43200 > th dose dependent rect. 9 19
978 19.35 wind 9.0 43200 > th dose dependent rect. 13 20
990 19.36 wind 3.0 43200 > th dose independent rect. 6 1