BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0865600 Os01g0865600|AK099677
(904 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G27230.1 | chr2:11650895-11653840 FORWARD LENGTH=651 303 2e-82
AT1G64625.1 | chr1:24016878-24019181 FORWARD LENGTH=528 212 6e-55
AT1G06150.1 | chr1:1867129-1873194 REVERSE LENGTH=1323 208 1e-53
AT2G31280.3 | chr2:13339678-13343424 FORWARD LENGTH=738 193 3e-49
AT5G53900.2 | chr5:21881375-21883133 REVERSE LENGTH=378 62 1e-09
AT5G24352.1 | chr5:8311092-8311767 FORWARD LENGTH=80 58 3e-08
>AT2G27230.1 | chr2:11650895-11653840 FORWARD LENGTH=651
Length = 650
Score = 303 bits (777), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 185/387 (47%), Positives = 228/387 (58%), Gaps = 75/387 (19%)
Query: 498 GGNDLFDVLQLQQKPNGSNNSEVNNRQSMPYGSEQAVKSLIGCVDDDFTGLITEADP--- 554
G +DLFD+L L K G +NS +G Q ++ DF +I E DP
Sbjct: 293 GSDDLFDMLGLDDKNKGCDNS---------WGVSQMRTEVLTRELSDFR-IIQEMDPEFG 342
Query: 555 ---------DQLLDAIVSKIITGHKQNVD-TSASCSTTVAGFDRPLHSDCHLYTTGPSSG 604
D LLDA+VS + KQ D TS SC TT+
Sbjct: 343 SSGYELSGTDHLLDAVVSGACSSTKQISDETSESCKTTLT-------------------- 382
Query: 605 PIFCNFASVAPVAIKTEGPAAGSRQSSSSIDKSAGCSQTQES-YKSQIRLWVENNHSVGS 663
V+ ++ T P+ S Q S +K G S Y SQI WVE HS+
Sbjct: 383 -------KVSNSSVTT--PSHSSPQGSQLFEKKHGQPLGPSSVYGSQISSWVEQAHSLKR 433
Query: 664 DSLSTGQASDSLSTGQCKRSDEIGK--SNRKRSRPGESARPRPKDRQMIQDRIKELREIV 721
+ + + +E K +NRKR +PGE+ RPRPKDRQMIQDR+KELREI+
Sbjct: 434 EG-----------SPRMVNKNETAKPANNRKRLKPGENPRPRPKDRQMIQDRVKELREII 482
Query: 722 PNSAKCSIDTLLEKTIKHMLFLQNVAKHADKLKGSGEPKIVSHEEGLLLKDNFEGGATWA 781
PN AKCSID LLE+TIKHMLFLQNV+KH+DKLK +GE KI+ E+G GGATWA
Sbjct: 483 PNGAKCSIDALLERTIKHMLFLQNVSKHSDKLKQTGESKIMK-EDG--------GGATWA 533
Query: 782 FEVGTRSMTCPIIVEDLNPPRQMLVEMLCKERGIFLEIADQIRGLGLTILKGVMEVRKDK 841
FEVG++SM CPI+VED+NPPR VEMLC++RG FLEIAD IR LGLTILKGV+E R DK
Sbjct: 534 FEVGSKSMVCPIVVEDINPPRIFQVEMLCEQRGFFLEIADWIRSLGLTILKGVIETRVDK 593
Query: 842 IWARFAVEANKDVTRMEIFLSLVHLLE 868
IWARF VEA++DVTRMEIF+ LV++LE
Sbjct: 594 IWARFTVEASRDVTRMEIFMQLVNILE 620
Score = 99.0 bits (245), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 103/223 (46%), Gaps = 39/223 (17%)
Query: 7 LRDSLRRLCTDVGWSYAVFWRATRAADSQRLKLVWGDGHYE-RAAGAPSISGFEAMDLLL 65
LR++LR +C + WSYAVFW+ S L+W + + E ++ P +D
Sbjct: 5 LREALRSMCVNNQWSYAVFWKIGCQNSSL---LIWEECYNETESSSNPRRLCGLGVD--- 58
Query: 66 KEKXXXXXXXXXXXXXXXXXXXXXXXXXHSHDRVDALVHKAMAQ-QVHVVGEGVIGQAAL 124
+++V L ++ M ++ +VGEG++G+AA
Sbjct: 59 ---------------------------TQGNEKVQLLTNRMMLNNRIILVGEGLVGRAAF 91
Query: 125 TGLHRWIVHDIXXXXXXXXXXXXXMKGQFCAGIQTIAVIPVLPRGVIQLGSTKMVMEEAA 184
TG H+WI+ + M QF AGIQT+AV PV+P GV+QLGS+ +ME
Sbjct: 92 TGHHQWILANSFNRDVHPPEVINEMLLQFSAGIQTVAVFPVVPHGVVQLGSSLPIMENLG 151
Query: 185 FIDHVRSLFQQLGSSTAVVPCGSFVQDSIMRTPFHKSLGVPTS 227
F++ V+ L QLG VP ++ P +GVP S
Sbjct: 152 FVNDVKGLILQLG----CVPGALLSENYRTYEPAADFIGVPVS 190
>AT1G64625.1 | chr1:24016878-24019181 FORWARD LENGTH=528
Length = 527
Score = 212 bits (540), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 110/215 (51%), Positives = 141/215 (65%), Gaps = 12/215 (5%)
Query: 657 NNHSVGSDSLSTGQASDSLSTGQCKRSDEIGKSNRKRSRPGESARPRPKDRQMIQDRIKE 716
+V S SL S G K+ E G +KR++ GES RPRPKDRQMIQDRIKE
Sbjct: 318 QEETVTSRSLWIDDDERSSIGGNWKKPHEEG-VKKKRAKAGESRRPRPKDRQMIQDRIKE 376
Query: 717 LREIVPNSAKCSIDTLLEKTIKHMLFLQNVAKHADKLKGSGEPKIVSHEEGLLLKDNFEG 776
LR ++PN AKCSIDTLL+ TIKHM+F+Q++AK+A++LK E K+V +E
Sbjct: 377 LRGMIPNGAKCSIDTLLDLTIKHMVFMQSLAKYAERLKQPYESKLVKEKE---------- 426
Query: 777 GATWAFEVGTRSMTCPIIVEDLNPPRQMLVEMLCKERGIFLEIADQIRGLGLTILKGVME 836
TWA EVG + CPI+VE+LN +M +EM+C+ER FLEI +RGLGL ILKGVME
Sbjct: 427 -RTWALEVGEEGVVCPIMVEELNREGEMQIEMVCEEREEFLEIGQVVRGLGLKILKGVME 485
Query: 837 VRKDKIWARFAVEANKDVTRMEIFLSLVHLLEPST 871
RK +IWA F V+A VTR+++ SLV L + T
Sbjct: 486 TRKGQIWAHFIVQAKPQVTRIQVLYSLVQLFQHHT 520
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 16/99 (16%)
Query: 107 MAQQVHVVGEGVIGQAALTGLHRWIVHDIXXXXXXXXXXXXXMKGQFCAGI--------- 157
M Q ++G+G++G+ A +G H+W+ D + QF G
Sbjct: 52 MVLQAPILGQGIVGEVASSGNHQWLFSD------TLFQWEHEFQNQFLCGFKILIRQFTY 105
Query: 158 -QTIAVIPVLPRGVIQLGSTKMVMEEAAFIDHVRSLFQQ 195
QTIA+IP+ GV+QLGST+ ++E ++ Q+
Sbjct: 106 TQTIAIIPLGSSGVVQLGSTQKILESTEILEQTTRALQE 144
>AT1G06150.1 | chr1:1867129-1873194 REVERSE LENGTH=1323
Length = 1322
Score = 208 bits (530), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 105/199 (52%), Positives = 138/199 (69%), Gaps = 2/199 (1%)
Query: 679 QCKRSDEIGKSNRKRSRPGESARPRPKDRQMIQDRIKELREIVPNSAKCSIDTLLEKTIK 738
Q S EI K N+KR++PGES+RPRP+DRQ+IQDRIKELRE+VPN +KCSID+LLE TIK
Sbjct: 537 QFPTSLEIPKKNKKRAKPGESSRPRPRDRQLIQDRIKELRELVPNGSKCSIDSLLECTIK 596
Query: 739 HMLFLQNVAKHADKLKGSGEPKIVSHEEGLLLKDNFEGGATWAFEVGTRSMTCPIIVEDL 798
HMLFLQ+V++HADKL S K+ + G L + E G++WA E+G C I+VE+L
Sbjct: 597 HMLFLQSVSQHADKLTKSASSKMQHKDTGTLGISSTEQGSSWAVEIGGHLQVCSIMVENL 656
Query: 799 NPPRQMLVEMLCKERGIFLEIADQIRGLGLTILKGVMEVRKDKIWARFAVEA--NKDVTR 856
+ ML+EMLC+E FLEIA+ IR L L IL+G E + +K W F VE NK + R
Sbjct: 657 DKEGVMLIEMLCEECSHFLEIANVIRSLELIILRGTTEKQGEKTWICFVVEGQNNKVMHR 716
Query: 857 MEIFLSLVHLLEPSTGSSI 875
M+I SLV + +P +S+
Sbjct: 717 MDILWSLVQIFQPKATNSL 735
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 84/191 (43%), Gaps = 37/191 (19%)
Query: 7 LRDSLRRLCTDVGWSYAVFWRATRAADS-QRLKLVWGDGHYERAAGAPSISGFEAMDLLL 65
L+ LR +C++ W+YAVFW+ + L+ V+ H ER S+ G
Sbjct: 5 LQQILRSICSNTDWNYAVFWKLNHHSPMVLTLEDVYCVNH-ERGLMPESLHG-------- 55
Query: 66 KEKXXXXXXXXXXXXXXXXXXXXXXXXXHSHDRVDALVHKAMAQQVHVVGEGVIGQAALT 125
H+HD + V K M+ VH +GEG++GQ A++
Sbjct: 56 --------------------------GRHAHDPLGLAVAK-MSYHVHSLGEGIVGQVAIS 88
Query: 126 GLHRWIVHDIXXXXXXXXXXXXXMKGQFCAGIQTIAVIPVLPRGVIQLGSTKMVMEEAAF 185
G H+WI + + Q AGI+TI ++ V GV+QLGS V E+ A
Sbjct: 89 GQHQWIFSEYLNDSHSTLQVHNGWESQISAGIKTILIVAVGSCGVVQLGSLCKVEEDPAL 148
Query: 186 IDHVRSLFQQL 196
+ H+R LF L
Sbjct: 149 VTHIRHLFLAL 159
>AT2G31280.3 | chr2:13339678-13343424 FORWARD LENGTH=738
Length = 737
Score = 193 bits (491), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 102/210 (48%), Positives = 131/210 (62%), Gaps = 26/210 (12%)
Query: 679 QCKRSDEIGKSNRKRSRPGESARPRPKDRQMIQDRIKELREIVPNSAKCSIDTLLEKTIK 738
Q + S +I K N+KR++PGES+RPRP+DRQ+IQDRIKELRE+VPN +KCSID+LLE+TIK
Sbjct: 529 QFQTSLDIPKKNKKRAKPGESSRPRPRDRQLIQDRIKELRELVPNGSKCSIDSLLERTIK 588
Query: 739 HMLFLQNVAKHADKLKGSGEPKIVSHEEGLLLKDNFEGGATWAFEVGTRSMTCPIIVEDL 798
HMLFLQNV KHA+KL S K+ E G+ G++ A EVG IIVE+L
Sbjct: 589 HMLFLQNVTKHAEKLSKSANEKMQQKETGM-------QGSSCAVEVGGHLQVSSIIVENL 641
Query: 799 NPPRQMLVEMLCKERGIFLEIADQIRGLGLTILKGVMEVRKDKIWARFAVEANKDVT--- 855
N +L+EMLC+E G FLEIA+ IR L L IL+G E + +K W F E +T
Sbjct: 642 NKQGMVLIEMLCEECGHFLEIANVIRSLDLVILRGFTETQGEKTWICFVTEVGSRITQFM 701
Query: 856 ----------------RMEIFLSLVHLLEP 869
RM+I SLV + +P
Sbjct: 702 KEIPKQIKSQNSKVMQRMDILWSLVQIFQP 731
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 81/189 (42%), Gaps = 42/189 (22%)
Query: 8 RDSLRRLCTDVGWSYAVFWRATRAADSQRLKLVWGDGHYERAAGAPSISGFEAMDLLLKE 67
++ L+ C + W YAVFW+ R+ L D +Y+ ++ G
Sbjct: 6 QEILKSFCFNTDWDYAVFWQLNHRGS--RMVLTLEDAYYDHHG--TNMHG---------- 51
Query: 68 KXXXXXXXXXXXXXXXXXXXXXXXXXHSHDRVDALVHKAMAQQVHVVGEGVIGQAALTGL 127
+HD + V K M+ V+ +GEG++GQ A++G
Sbjct: 52 ---------------------------AHDPLGLAVAK-MSYHVYSLGEGIVGQVAVSGE 83
Query: 128 HRWIVHDIXXXXXXXXXXXXXMKGQFCAGIQTIAVIPVLPRGVIQLGSTKMVMEEAAFID 187
H+W+ + + Q AGI+TI V+ V P GV+QLGS V E+ F++
Sbjct: 84 HQWVFPENYNNCNSAFEFHNVWESQISAGIKTILVVAVGPCGVVQLGSLCKVNEDVNFVN 143
Query: 188 HVRSLFQQL 196
H+R LF L
Sbjct: 144 HIRHLFLAL 152
>AT5G53900.2 | chr5:21881375-21883133 REVERSE LENGTH=378
Length = 377
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 85/222 (38%), Gaps = 53/222 (23%)
Query: 2 AGAAPLRDSLRRLCTDVGWSYAVFW-----------RATRAAD-SQRLKLVWGDGHYERA 49
G L ++LR +C + W Y+VFW + D S L L+W DG
Sbjct: 16 VGMMALHEALRSVCFNSDWIYSVFWTIRPRPRVRGGNGCKIGDESGSLMLMWEDGF---- 71
Query: 50 AGAPSISGFEAMDLLLKEKXXXXXXXXXXXXXXXXXXXXXXXXXHSHDRVDALVHKAMAQ 109
G + DL L+ H D V K M+
Sbjct: 72 -----CGGGRSEDLCLE----------------------TDIEGHEEDLVRKAFSK-MSI 103
Query: 110 QVHVVGEGVIGQAALTGLHRWIVHDIXXXXXXXXXXXXX--------MKGQFCAGIQTIA 161
Q++ GEG++G+ A H+W+ + QF +GIQTIA
Sbjct: 104 QLYNYGEGLMGKVASDKCHKWVFKEPSESEPNLANYWQSSFDALPPEWTDQFESGIQTIA 163
Query: 162 VIPVLPRGVIQLGSTKMVMEEAAFIDHVRSLFQQLGSSTAVV 203
VI G++QLGS K++ E+ F+ +R +F+ +G +
Sbjct: 164 VIQA-GHGLLQLGSCKIIPEDLHFVLRMRQMFESIGYRSGFY 204
>AT5G24352.1 | chr5:8311092-8311767 FORWARD LENGTH=80
Length = 79
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 12/89 (13%)
Query: 107 MAQQVHVVGEGVIGQAALTGLHRWIVHDIXXXXXXXXXXXXXMKGQFCAGIQTIAVIPVL 166
M Q +G+G++G+ A TG H+W+ D + QF +G +TIA+IP+
Sbjct: 1 MTLQAPFLGQGIVGEVASTGNHQWLFSD------------TLFQNQFLSGFKTIAIIPLG 48
Query: 167 PRGVIQLGSTKMVMEEAAFIDHVRSLFQQ 195
GV+QLGST+ ++E ++ Q+
Sbjct: 49 SSGVVQLGSTQKILESTKILEQTTRALQE 77
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.130 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 18,831,484
Number of extensions: 779459
Number of successful extensions: 2451
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 2447
Number of HSP's successfully gapped: 10
Length of query: 904
Length of database: 11,106,569
Length adjustment: 108
Effective length of query: 796
Effective length of database: 8,145,641
Effective search space: 6483930236
Effective search space used: 6483930236
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 116 (49.3 bits)