BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0827400 Os01g0827400|AK108526
         (145 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0827400  Prenylated rab acceptor PRA1 family protein         238   8e-64
Os05g0474400  Prenylated rab acceptor PRA1 family protein         179   6e-46
Os11g0107600  Prenylated rab acceptor PRA1 family protein         130   2e-31
Os12g0107600  Prenylated rab acceptor PRA1 family protein         130   4e-31

>Os01g0827400 Prenylated rab acceptor PRA1 family protein
          Length = 145

 Score =  238 bits (608), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 125/145 (86%), Positives = 125/145 (86%)

Query: 1   LSEATSRLRRNLAYFRVNYXXXXXXXXXXXXXXXXXXXXVLLAILGGWCFLYVFRAADQP 60
           LSEATSRLRRNLAYFRVNY                    VLLAILGGWCFLYVFRAADQP
Sbjct: 1   LSEATSRLRRNLAYFRVNYAAVVAFSLAASLLAHPFSLLVLLAILGGWCFLYVFRAADQP 60

Query: 61  VVLFGRTFTDRETLLGLVVASVLAFFMTSVASLIISGLLVGGAIVAVHGAFRVPEDLFLD 120
           VVLFGRTFTDRETLLGLVVASVLAFFMTSVASLIISGLLVGGAIVAVHGAFRVPEDLFLD
Sbjct: 61  VVLFGRTFTDRETLLGLVVASVLAFFMTSVASLIISGLLVGGAIVAVHGAFRVPEDLFLD 120

Query: 121 DPSVGSNGNTTSRLLSFLGAPGSGV 145
           DPSVGSNGNTTSRLLSFLGAPGSGV
Sbjct: 121 DPSVGSNGNTTSRLLSFLGAPGSGV 145



>Os05g0474400 Prenylated rab acceptor PRA1 family protein
          Length = 220

 Score =  179 bits (454), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 99/145 (68%), Positives = 107/145 (73%)

Query: 1   LSEATSRLRRNLAYFRVNYXXXXXXXXXXXXXXXXXXXXVLLAILGGWCFLYVFRAADQP 60
           LS+ATSRLRRNLAYFRVNY                    VLL +L  WCFLY+FR +DQP
Sbjct: 76  LSDATSRLRRNLAYFRVNYAAVVAFALGASLLAHPFSLLVLLGLLAAWCFLYLFRGSDQP 135

Query: 61  VVLFGRTFTDRETLLGLVVASVLAFFMTSVASLIISGLLVGGAIVAVHGAFRVPEDLFLD 120
           VVLFGRTF+DRETLLGLVVAS +AFF TSVASLIISGLLVGGAIVAVHGA R+PEDLFLD
Sbjct: 136 VVLFGRTFSDRETLLGLVVASFVAFFFTSVASLIISGLLVGGAIVAVHGACRMPEDLFLD 195

Query: 121 DPSVGSNGNTTSRLLSFLGAPGSGV 145
           D    S  +    LLSFLGAPGS V
Sbjct: 196 DADAASGNSAAQGLLSFLGAPGSRV 220



>Os11g0107600 Prenylated rab acceptor PRA1 family protein
          Length = 257

 Score =  130 bits (328), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 74/139 (53%), Positives = 90/139 (64%), Gaps = 2/139 (1%)

Query: 1   LSEATSRLRRNLAYFRVNYXXXXXXXXXXXXXXXXXXXXVLLAILGGWCFLYVFRAAD-Q 59
           LS+A +RLR+NLAYFRVNY                     LLA+L  WCFLY+ R +D  
Sbjct: 75  LSDAGARLRKNLAYFRVNYAAIVALSLAATLLAHPFSLAALLALLAAWCFLYLLRPSDAP 134

Query: 60  PVVLFGRTFTDRETLLGLVVASVLAFFMTSVASLIISGLLVGGAIVAVHGAFRVPEDLFL 119
           P+  FGRTF+DRETL GL+VAS    F+TSV SLI S L +G AIV  HGAFR+PEDLFL
Sbjct: 135 PLAAFGRTFSDRETLGGLIVASAFVVFLTSVGSLIFSALALGAAIVCAHGAFRIPEDLFL 194

Query: 120 DDPSVGSNGNTTSRLLSFL 138
           D+P   +NG  +  LLSF+
Sbjct: 195 DEPD-QANGAASVNLLSFI 212



>Os12g0107600 Prenylated rab acceptor PRA1 family protein
          Length = 220

 Score =  130 bits (327), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 73/139 (52%), Positives = 90/139 (64%), Gaps = 2/139 (1%)

Query: 1   LSEATSRLRRNLAYFRVNYXXXXXXXXXXXXXXXXXXXXVLLAILGGWCFLYVFRAAD-Q 59
           LS++ +RLR+NLAYFRVNY                     LLA+L  WCFLY+ R +D  
Sbjct: 75  LSDSGARLRKNLAYFRVNYAAIVALSLAASLLAHPFSLAALLALLAAWCFLYLLRPSDAP 134

Query: 60  PVVLFGRTFTDRETLLGLVVASVLAFFMTSVASLIISGLLVGGAIVAVHGAFRVPEDLFL 119
           P+  FGRTF+DRETL GL+VAS    F+TSV SLI S L +G AIV  HGAFR+PEDLFL
Sbjct: 135 PLAAFGRTFSDRETLGGLIVASAFVIFLTSVGSLIFSALALGAAIVCAHGAFRIPEDLFL 194

Query: 120 DDPSVGSNGNTTSRLLSFL 138
           D+P   +NG  +  LLSF+
Sbjct: 195 DEPD-QANGAASVNLLSFI 212



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.327    0.143    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,888,412
Number of extensions: 132689
Number of successful extensions: 405
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 397
Number of HSP's successfully gapped: 6
Length of query: 145
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 54
Effective length of database: 12,284,327
Effective search space: 663353658
Effective search space used: 663353658
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 151 (62.8 bits)