BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0826800 Os01g0826800|AK111090
(171 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0826800 Conserved hypothetical protein 270 5e-73
Os05g0474700 Conserved hypothetical protein 158 2e-39
Os03g0298100 Conserved hypothetical protein 134 5e-32
Os05g0165200 Conserved hypothetical protein 130 4e-31
Os01g0165600 124 4e-29
Os01g0758500 Conserved hypothetical protein 70 1e-12
>Os01g0826800 Conserved hypothetical protein
Length = 171
Score = 270 bits (689), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 136/171 (79%), Positives = 136/171 (79%)
Query: 1 MGNSLRCCLACVLPCGALDVVRIVHLSGHVDEFSCPVTAGAVLAAHPNHTLTTTWSSAGV 60
MGNSLRCCLACVLPCGALDVVRIVHLSGHVDEFSCPVTAGAVLAAHPNHTLTTTWSSAGV
Sbjct: 1 MGNSLRCCLACVLPCGALDVVRIVHLSGHVDEFSCPVTAGAVLAAHPNHTLTTTWSSAGV 60
Query: 61 GCPTKKLVIVSPDSELKRGRIYFLIPSATLPADXXXXXXXXXXXXXXXXXXXXXXXNGAA 120
GCPTKKLVIVSPDSELKRGRIYFLIPSATLPAD NGAA
Sbjct: 61 GCPTKKLVIVSPDSELKRGRIYFLIPSATLPADRRKKSRQSSNKKSKRPSHHHHKSNGAA 120
Query: 121 TAASTAEQDNYLRELLSEKTAAXXXXXXXXXXXXVGVWRPQLESIVEEQSD 171
TAASTAEQDNYLRELLSEKTAA VGVWRPQLESIVEEQSD
Sbjct: 121 TAASTAEQDNYLRELLSEKTAASGGQRRRRSGSRVGVWRPQLESIVEEQSD 171
>Os05g0474700 Conserved hypothetical protein
Length = 171
Score = 158 bits (399), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 104/179 (58%), Positives = 113/179 (63%), Gaps = 16/179 (8%)
Query: 1 MGNSLRCCLACVLPCGALDVVRIVHLSGHVDEF-SCPVTAGAVLAAHPNHTLT---TTWS 56
MGNSLRCCLAC+LPCGALDVVR+VHLSG VDEF SCP+TA VLAAHPNH LT +
Sbjct: 1 MGNSLRCCLACMLPCGALDVVRVVHLSGRVDEFTSCPLTAADVLAAHPNHALTAAWSPGG 60
Query: 57 SAGVGCPTKKLVIVSPDSELKRGRIYFLIPSA-TLPADXXXXXXXXXXXXXXXXXXXXXX 115
+ G P +K+VIVSPDSELKRGRIYFLIPSA + PA
Sbjct: 61 AGAGGAPCRKIVIVSPDSELKRGRIYFLIPSACSAPA------ADKMMTRRKKKKRCHGN 114
Query: 116 XNG---AATAASTAEQDNYLRELLSEKTAAXXXXXXXXXXXXVGVWRPQLESIVEEQSD 171
NG +A AASTAEQDNYL ELLSEK VWRPQLESI EE SD
Sbjct: 115 GNGKGGSAAAASTAEQDNYLMELLSEKRGTSHRRRRSGARAG--VWRPQLESIAEEPSD 171
>Os03g0298100 Conserved hypothetical protein
Length = 178
Score = 134 bits (336), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 74/180 (41%), Positives = 99/180 (55%), Gaps = 18/180 (10%)
Query: 1 MGNSLRCCLACVLPCGALDVVRIVHLSGHVDEFSCPVTAGAVLAAHPNHTLTTTWSSAGV 60
MGNSLRCCLACVLPCG+ DVVRIVHL+GH++E++ PVTAG V+AAHP+H L+ S G
Sbjct: 1 MGNSLRCCLACVLPCGSFDVVRIVHLNGHIEEYARPVTAGEVVAAHPSHVLSRPCSQGG- 59
Query: 61 GCPTKKLVIVSPDSELKRGRIYFLIPSATLPADXXXXXXXXXXXXXXXXXXXXXXXNGA- 119
++++IVSP+SELKRG YFL+P++++P
Sbjct: 60 ---ARRILIVSPESELKRGCFYFLVPASSVPEKKIKRKPSSSSAPPRPRPQQKKAPRPPP 116
Query: 120 ----------ATAASTAEQDNYLRELLSEKTAAXXXXXXXXXXXXVGVWRPQLESIVEEQ 169
AT A+ D+YL E+L+E A VWRP L+ I EE+
Sbjct: 117 TPETSVLARDATVAAKNGGDSYLAEVLAEGKA---TGCKRRRSVRAAVWRPHLQIIAEEE 173
>Os05g0165200 Conserved hypothetical protein
Length = 261
Score = 130 bits (327), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 66/164 (40%), Positives = 92/164 (56%), Gaps = 1/164 (0%)
Query: 1 MGNSLRCCLACVLPCGALDVVRIVHLSGHVDEFSCPVTAGAVLAAHPNHTLTTTWSSAGV 60
MGNSLRCCLACVLPCGALD++RIVHL+G V+E+ PV AG +LAA+PNH L+ S G
Sbjct: 1 MGNSLRCCLACVLPCGALDLIRIVHLNGRVEEYGRPVAAGEILAANPNHVLSKPCCSQGG 60
Query: 61 GCPTKK-LVIVSPDSELKRGRIYFLIPSATLPADXXXXXXXXXXXXXXXXXXXXXXXNGA 119
++ ++IVSPDSEL+RG IYFLIP++++P A
Sbjct: 61 AVAVRRTILIVSPDSELERGEIYFLIPASSVPDKKKKSGGGAAAATPAASGRHGKSKQAA 120
Query: 120 ATAASTAEQDNYLRELLSEKTAAXXXXXXXXXXXXVGVWRPQLE 163
++ ++R++ SEK ++ WRP L+
Sbjct: 121 PSSDHGGNGRRHVRDVSSEKRSSSLHRRRMSAGSRTAAWRPHLD 164
>Os01g0165600
Length = 170
Score = 124 bits (311), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 60/91 (65%), Positives = 73/91 (80%), Gaps = 2/91 (2%)
Query: 1 MGNSLRCCLACVLPCGALDVVRIVHLSGHVDEFSCPVTAGAVLAAHPNHTLTTTWSSAGV 60
MGN+LRCCLACVLPCGALD+VRIVHLSG VDE+ V+AG VLAAHPNH L+ SS
Sbjct: 1 MGNNLRCCLACVLPCGALDLVRIVHLSGRVDEYGRAVSAGEVLAAHPNHVLSRPCSSQQG 60
Query: 61 GCPTKKLVIVSPDSELKRGRIYFLIPSATLP 91
+++IVSP+SEL+RG IYFLIP+A++P
Sbjct: 61 A--AGRILIVSPESELERGEIYFLIPAASVP 89
>Os01g0758500 Conserved hypothetical protein
Length = 98
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 29/47 (61%), Positives = 39/47 (82%)
Query: 3 NSLRCCLACVLPCGALDVVRIVHLSGHVDEFSCPVTAGAVLAAHPNH 49
+++RCC+AC+LPCGALDVVRIVH +G V+E S PV AG ++ A+P H
Sbjct: 2 DTIRCCIACILPCGALDVVRIVHSNGRVEEISRPVLAGEIMKAYPKH 48
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.131 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,686,029
Number of extensions: 154107
Number of successful extensions: 376
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 368
Number of HSP's successfully gapped: 6
Length of query: 171
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 77
Effective length of database: 12,127,685
Effective search space: 933831745
Effective search space used: 933831745
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 152 (63.2 bits)