Os05g0165200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0165200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 167.36 | 0.608 | 4.67 | -0.428 | 0.675 | -0.374 | -0.67 | -3.15 | 0.0065 | 18.5 | 997 | 3796 | -- | -- |
| 179.95 | 0.625 | 4.7 | -0.668 | 0.689 | -0.474 | -1.05 | -- | 0.00882 | 18.2 | 997 | 3810 | -- | -- |
| 168.46 | 0.604 | 4.67 | -0.405 | 0.671 | -0.359 | -- | -3.23 | 0.00474 | 18.6 | 997.8 | 3809 | -- | -- |
| 180.92 | 0.626 | 4.73 | -0.716 | 0.701 | -0.491 | -- | -- | -0.0819 | 18.5 | 944.6 | 10325 | -- | -- |
| 191.85 | 0.645 | 4.66 | -0.405 | -- | -0.298 | -- | -3.31 | -0.0143 | -- | 997.7 | 3774 | -- | -- |
| 183.83 | 0.636 | 4.73 | -0.658 | 0.669 | -- | -0.853 | -- | -0.0842 | 18.5 | -- | -- | -- | -- |
| 185.61 | 0.638 | 4.73 | -0.647 | 0.665 | -- | -- | -- | -0.0873 | 18.6 | -- | -- | -- | -- |
| 203.67 | 0.665 | 4.72 | -0.783 | -- | -0.517 | -- | -- | -0.122 | -- | 943.9 | 13470 | -- | -- |
| 194.99 | 0.65 | 4.71 | -- | 0.677 | -0.277 | -- | -- | -0.00943 | 18.6 | 945.2 | 10552 | -- | -- |
| 208.68 | 0.675 | 4.72 | -0.662 | -- | -- | -- | -- | -0.101 | -- | -- | -- | -- | -- |
| 196.63 | 0.656 | 4.72 | -- | 0.673 | -- | -- | -- | -0.0153 | 18.6 | -- | -- | -- | -- |
| 218.68 | 0.689 | 4.7 | -- | -- | -0.279 | -- | -- | -0.031 | -- | 947.5 | 13375 | -- | -- |
| 220.25 | 0.693 | 4.7 | -- | -- | -- | -- | -- | -0.0272 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 161.87 | atmosphere | 1000 | 1440 | < th | dose dependent | rect. | 9 | 2 |
| 2 | 161.90 | atmosphere | 1000 | 1440 | < th | dose dependent | rect. | 8 | 4 |
| 11 | 162.66 | atmosphere | 1000 | 1440 | > th | dose independent | rect. | 8 | 3 |
| 12 | 162.71 | atmosphere | 1000 | 1440 | < th | dose independent | rect. | 9 | 2 |
| 58 | 164.96 | temperature | 20 | 270 | < th | dose dependent | rect. | 3 | 7 |
| 71 | 165.35 | temperature | 20 | 270 | < th | dose dependent | sin | 5 | NA |
| 74 | 165.38 | temperature | 20 | 270 | < th | dose dependent | rect. | 1 | 10 |
| 87 | 165.55 | temperature | 20 | 270 | < th | dose dependent | rect. | 1 | 15 |
| 100 | 165.75 | temperature | 15 | 30 | > th | dose dependent | rect. | 23 | 15 |
| 106 | 165.81 | temperature | 20 | 270 | < th | dose dependent | rect. | 3 | 13 |
| 107 | 165.81 | temperature | 20 | 270 | < th | dose dependent | rect. | 1 | 20 |
| 146 | 166.27 | atmosphere | 1000 | 4320 | > th | dose dependent | rect. | 10 | 1 |
| 153 | 166.31 | temperature | 20 | 270 | < th | dose dependent | rect. | 3 | 18 |
| 188 | 166.59 | temperature | 20 | 270 | > th | dose independent | rect. | 4 | 10 |
| 221 | 166.81 | wind | 7 | 4320 | < th | dose dependent | rect. | 10 | 1 |
| 233 | 166.86 | temperature | 15 | 30 | > th | dose dependent | rect. | 20 | 18 |
| 237 | 166.89 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 15 | 5 |
| 247 | 166.96 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 11 | 2 |
| 295 | 167.15 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 10 | 7 |
| 305 | 167.18 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 11 | 11 |
| 306 | 167.18 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 11 | 11 |
| 307 | 167.18 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 325 | 167.22 | atmosphere | 1015 | 4320 | < th | dose dependent | rect. | 11 | 1 |
| 335 | 167.24 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 12 | 1 |
| 348 | 167.27 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 13 | 1 |
| 353 | 167.27 | wind | 1 | 4320 | > th | dose dependent | rect. | 10 | 1 |
| 373 | 167.31 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 11 | 6 |
| 376 | 167.32 | temperature | 20 | 270 | > th | dose independent | rect. | 20 | 16 |
| 387 | 167.34 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 11 | 4 |
| 391 | 167.34 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 11 |
| 400 | 167.38 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 11 | 6 |
| 422 | 167.42 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 13 | 5 |
| 456 | 167.47 | atmosphere | 1000 | 4320 | > th | dose dependent | sin | 0 | NA |
| 462 | 167.48 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 11 | 4 |
| 503 | 167.53 | atmosphere | 1000 | 1440 | < th | dose independent | sin | 6 | NA |
| 504 | 167.53 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 14 | 5 |
| 510 | 167.53 | atmosphere | 1015 | 4320 | < th | dose dependent | rect. | 13 | 1 |
| 511 | 167.53 | radiation | 1 | 43200 | < th | dose dependent | rect. | 21 | 5 |
| 513 | 167.53 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 11 |
| 545 | 167.57 | wind | 5 | 4320 | < th | dose independent | rect. | 10 | 3 |
| 571 | 167.60 | atmosphere | 995 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 596 | 167.64 | atmosphere | 1000 | 1440 | > th | dose independent | sin | 6 | NA |
| 618 | 167.67 | wind | 5 | 4320 | > th | dose independent | rect. | 12 | 1 |
| 635 | 167.69 | atmosphere | 1015 | 4320 | > th | dose dependent | sin | 22 | NA |
| 670 | 167.72 | temperature | 15 | 270 | > th | dose dependent | rect. | 20 | 16 |
| 689 | 167.76 | atmosphere | 1015 | 4320 | > th | dose independent | sin | 20 | NA |
| 718 | 167.79 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 7 | 15 |
| 739 | 167.82 | atmosphere | 1015 | 4320 | < th | dose independent | sin | 20 | NA |
| 831 | 167.91 | temperature | 25 | 30 | > th | dose independent | rect. | 23 | 15 |
| 859 | 167.94 | atmosphere | 1015 | 4320 | < th | dose dependent | rect. | 15 | 1 |
| 873 | 167.95 | wind | 5 | 4320 | < th | dose independent | rect. | 12 | 1 |
| 913 | 167.99 | atmosphere | 1015 | 4320 | < th | dose dependent | sin | 0 | NA |
| 961 | 168.03 | atmosphere | 995 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 964 | 168.03 | temperature | 25 | 30 | < th | dose dependent | rect. | 4 | 8 |