Os05g0474700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0474700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 252.46 | 0.747 | 3.8 | 0.998 | 0.712 | -1.61 | 0.827 | 0.219 | -0.212 | 7.76 | 21.32 | 952 | -- | -- |
| 252.59 | 0.74 | 3.81 | 0.955 | 0.727 | -1.63 | 0.762 | -- | -0.221 | 7.78 | 21.36 | 980 | -- | -- |
| 254.24 | 0.743 | 3.81 | 0.947 | 0.713 | -1.62 | -- | -0.0118 | -0.233 | 7.88 | 21.32 | 945 | -- | -- |
| 254.23 | 0.743 | 3.81 | 0.961 | 0.706 | -1.62 | -- | -- | -0.227 | 7.92 | 21.31 | 946 | -- | -- |
| 277.79 | 0.776 | 3.82 | 0.946 | -- | -1.75 | -- | -0.146 | -0.195 | -- | 21.4 | 838 | -- | -- |
| 338.41 | 0.862 | 3.9 | 0.322 | 0.906 | -- | 0.563 | -- | -0.675 | 8.62 | -- | -- | -- | -- |
| 339.39 | 0.863 | 3.9 | 0.341 | 0.902 | -- | -- | -- | -0.674 | 8.75 | -- | -- | -- | -- |
| 277.87 | 0.776 | 3.82 | 0.987 | -- | -1.74 | -- | -- | -0.189 | -- | 21.38 | 830 | -- | -- |
| 274.45 | 0.772 | 3.84 | -- | 0.774 | -1.25 | -- | -- | -0.359 | 7.99 | 22.01 | 980 | -- | -- |
| 385.5 | 0.917 | 3.93 | 0.342 | -- | -- | -- | -- | -0.667 | -- | -- | -- | -- | -- |
| 342.46 | 0.866 | 3.91 | -- | 0.903 | -- | -- | -- | -0.712 | 8.72 | -- | -- | -- | -- |
| 299.37 | 0.806 | 3.85 | -- | -- | -1.39 | -- | -- | -0.318 | -- | 21.97 | 795 | -- | -- |
| 388.6 | 0.92 | 3.94 | -- | -- | -- | -- | -- | -0.705 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 256.40 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 24 | 21 |
| 2 | 256.48 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 24 | 19 |
| 4 | 256.68 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 19 | 17 |
| 5 | 256.89 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 17 | 19 |
| 26 | 257.93 | temperature | 25.0 | 720 | < th | dose dependent | sin | 9 | NA |
| 45 | 258.86 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 20 | 13 |
| 141 | 262.83 | temperature | 25.0 | 720 | < th | dose dependent | no | NA | NA |
| 142 | 262.84 | temperature | 20.0 | 720 | > th | dose independent | rect. | 20 | 20 |
| 160 | 263.43 | temperature | 20.0 | 720 | > th | dose independent | rect. | 12 | 21 |
| 162 | 263.45 | temperature | 15.0 | 720 | > th | dose dependent | sin | 8 | NA |
| 166 | 263.60 | temperature | 20.0 | 720 | > th | dose independent | rect. | 19 | 14 |
| 177 | 263.96 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 24 | 5 |
| 180 | 264.08 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 182 | 264.11 | wind | 9.0 | 14400 | < th | dose independent | rect. | 5 | 7 |
| 184 | 264.21 | temperature | 20.0 | 720 | > th | dose independent | rect. | 3 | 21 |
| 193 | 264.39 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 17 | 6 |
| 199 | 264.53 | wind | 9.0 | 14400 | > th | dose independent | rect. | 5 | 7 |
| 205 | 264.72 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 215 | 264.98 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 3 | 6 |
| 223 | 265.14 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 224 | 265.16 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 17 | 9 |
| 227 | 265.21 | temperature | 20.0 | 720 | < th | dose independent | sin | 7 | NA |
| 252 | 265.49 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 24 | 3 |
| 262 | 265.59 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 265 | 265.65 | temperature | 20.0 | 720 | < th | dose independent | rect. | 20 | 16 |
| 296 | 265.94 | temperature | 25.0 | 1440 | < th | dose dependent | sin | 16 | NA |
| 312 | 266.14 | temperature | 20.0 | 720 | < th | dose independent | rect. | 24 | 21 |
| 333 | 266.31 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 339 | 266.35 | temperature | 20.0 | 720 | > th | dose independent | rect. | 3 | 14 |
| 348 | 266.44 | temperature | 20.0 | 720 | < th | dose independent | rect. | 23 | 16 |
| 351 | 266.49 | temperature | 20.0 | 720 | > th | dose independent | sin | 8 | NA |
| 367 | 266.62 | wind | 9.0 | 14400 | < th | dose independent | rect. | 9 | 3 |
| 370 | 266.63 | temperature | 20.0 | 720 | > th | dose independent | rect. | 3 | 6 |
| 463 | 267.48 | wind | 9.0 | 14400 | > th | dose independent | rect. | 9 | 3 |
| 495 | 267.74 | wind | 9.0 | 14400 | < th | dose independent | rect. | 4 | 9 |
| 515 | 267.91 | temperature | 20.0 | 720 | > th | dose independent | rect. | 5 | 2 |
| 529 | 268.06 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 5 | 8 |
| 563 | 268.32 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 572 | 268.38 | wind | 9.0 | 14400 | < th | dose independent | rect. | 2 | 11 |
| 650 | 268.90 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 793 | 270.02 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 796 | 270.04 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 810 | 270.11 | wind | 9.0 | 14400 | < th | dose independent | rect. | 23 | 14 |
| 813 | 270.12 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 828 | 270.22 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 830 | 270.22 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 837 | 270.30 | temperature | 20.0 | 720 | > th | dose independent | no | NA | NA |
| 857 | 270.44 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 887 | 270.61 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 3 |