BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0793300 Os01g0793300|J065140J12
(313 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0793300 Tyrosinase family protein 651 0.0
Os01g0793100 Similar to Polyphenol oxidase (EC 1.10.3.1) (F... 233 1e-61
Os04g0624500 Similar to Polyphenol oxidase (EC 1.10.3.1) (F... 218 6e-57
Os04g0624300 Similar to Polyphenol oxidase (EC 1.10.3.1) (F... 121 8e-28
>Os01g0793300 Tyrosinase family protein
Length = 313
Score = 651 bits (1679), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/313 (100%), Positives = 313/313 (100%)
Query: 1 MANERCRVALFVLIVCAFAYAAVYTSSPAVSVNPCAQTLTRALLAVTGLDPYVVSCAADD 60
MANERCRVALFVLIVCAFAYAAVYTSSPAVSVNPCAQTLTRALLAVTGLDPYVVSCAADD
Sbjct: 1 MANERCRVALFVLIVCAFAYAAVYTSSPAVSVNPCAQTLTRALLAVTGLDPYVVSCAADD 60
Query: 61 GVSTPLLSDGGHDKINAGRVGGPIVTDLLQCRKPEGPDFPEDLQCCPPMPTSEPIDFTLP 120
GVSTPLLSDGGHDKINAGRVGGPIVTDLLQCRKPEGPDFPEDLQCCPPMPTSEPIDFTLP
Sbjct: 61 GVSTPLLSDGGHDKINAGRVGGPIVTDLLQCRKPEGPDFPEDLQCCPPMPTSEPIDFTLP 120
Query: 121 DPSEPLRTRRPAHVAGAEYMAKYERAIALMKALPRSDPRSFYQQAHIHCAYCTGAYRQVG 180
DPSEPLRTRRPAHVAGAEYMAKYERAIALMKALPRSDPRSFYQQAHIHCAYCTGAYRQVG
Sbjct: 121 DPSEPLRTRRPAHVAGAEYMAKYERAIALMKALPRSDPRSFYQQAHIHCAYCTGAYRQVG 180
Query: 181 HPELAVQVHFSWLFFPFHRAYLYFFERIAGKLLGDPGFAVPFWSWDVPEGMRMPLQFANA 240
HPELAVQVHFSWLFFPFHRAYLYFFERIAGKLLGDPGFAVPFWSWDVPEGMRMPLQFANA
Sbjct: 181 HPELAVQVHFSWLFFPFHRAYLYFFERIAGKLLGDPGFAVPFWSWDVPEGMRMPLQFANA 240
Query: 241 SSPLYDQMRNPWHAPPKLVDLDYAMDVVENNYTDDEQIKHNLWIMYKQVHYIYGSPFLLL 300
SSPLYDQMRNPWHAPPKLVDLDYAMDVVENNYTDDEQIKHNLWIMYKQVHYIYGSPFLLL
Sbjct: 241 SSPLYDQMRNPWHAPPKLVDLDYAMDVVENNYTDDEQIKHNLWIMYKQVHYIYGSPFLLL 300
Query: 301 HAFVSLSIDRFVT 313
HAFVSLSIDRFVT
Sbjct: 301 HAFVSLSIDRFVT 313
>Os01g0793100 Similar to Polyphenol oxidase (EC 1.10.3.1) (Fragment)
Length = 356
Score = 233 bits (594), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 118/212 (55%), Positives = 144/212 (67%), Gaps = 7/212 (3%)
Query: 79 RVGG-PIVT-DLLQCRKPEG-PDFPEDLQCCPPMPTSEPIDFTLPD--PSEPLRTRRPAH 133
R G P+ T D+ C P+ P L CCPP ++ P+DF P S PLRTR AH
Sbjct: 78 RAGADPVATPDISSCGPPDQLPPSANVLTCCPPPSSASPVDFAPPADASSSPLRTRPAAH 137
Query: 134 VAGAEYMAKYERAIALMKALPRSDPRSFYQQAHIHCAYCTGAYRQVGHPELAVQVHFSWL 193
AGA+Y+AK+ RAIA MKALP DPRSF QA +HCAYC G+Y G P L +QVH SWL
Sbjct: 138 SAGADYVAKFNRAIAAMKALPADDPRSFAAQASVHCAYCDGSYSPDGFPGLDLQVHNSWL 197
Query: 194 FFPFHRAYLYFFERIAGKLLGDPGFAVPFWSWDVPEGMRMPLQFANASSPLYDQMRNPWH 253
F PFHR YLYFFERI G L+GDP FA+PFW+WD P+GMRMP + + SSPL+D RN H
Sbjct: 198 FMPFHRCYLYFFERILGSLIGDPTFAIPFWNWDAPDGMRMPAMYTDQSSPLFDPRRNGRH 257
Query: 254 APPKLVDLDYAMDVVENNYTDDEQIKHNLWIM 285
PPKL+DLDY + E +TD++Q+ HNL +M
Sbjct: 258 VPPKLIDLDY--NGREPRFTDNQQVDHNLRVM 287
>Os04g0624500 Similar to Polyphenol oxidase (EC 1.10.3.1) (Fragment)
Length = 570
Score = 218 bits (554), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 120/255 (47%), Positives = 147/255 (57%), Gaps = 18/255 (7%)
Query: 46 VTGLDPYVVSCAAD--------DGVSTPLLSDGGHDKINAGRVGGPI-VTDLLQCRKP-E 95
G P VSC D G + + + GG G + PI DL C +P +
Sbjct: 43 TKGWKPRNVSCRVDRRDVLLGISGAAAMVATQGG-----GGALAAPIQAPDLGDCHQPVD 97
Query: 96 GPDFPEDLQCCPPMPTSE-PIDFTLPDPSEPLRTRRPAHVAGAEYMAKYERAIALMKALP 154
P + CCP +DF P S PLR R AH+A Y+AKYERA++LMK LP
Sbjct: 98 VPATAPAINCCPTYSAGTVAVDFAPPPASSPLRVRPAAHLADRAYLAKYERAVSLMKKLP 157
Query: 155 RSDPRSFYQQAHIHCAYCTGAYRQVGHPELAVQVHFSWLFFPFHRAYLYFFERIAGKLLG 214
DPRSF QQ +HCAYC GAY QVG P L +Q+H WLFFP+HR YLYF ERI GKL+G
Sbjct: 158 ADDPRSFEQQWRVHCAYCDGAYDQVGFPGLEIQIHSCWLFFPWHRMYLYFHERILGKLIG 217
Query: 215 DPGFAVPFWSWDVPEGMRMPLQFANASSPLYDQMRNPWHAPPKLVDLDYAMDVVENNYTD 274
D FA+PFW+WD P+GM P +AN SPLYD RN H PP +DLDY+ + N
Sbjct: 218 DETFALPFWNWDAPDGMSFPAMYANRWSPLYDPRRNQAHLPPFPLDLDYSG--TDTNIPK 275
Query: 275 DEQIKHNLWIMYKQV 289
D+ I NL IMY+Q+
Sbjct: 276 DQLIDQNLNIMYRQM 290
>Os04g0624300 Similar to Polyphenol oxidase (EC 1.10.3.1) (Fragment)
Length = 213
Score = 121 bits (303), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 62/129 (48%), Positives = 75/129 (58%), Gaps = 5/129 (3%)
Query: 76 NAGRVGGPI-VTDLLQCRKP---EGPDFPEDLQCCPPMPTSE-PIDFTLPDPSEPLRTRR 130
G + PI DL C +P PD ++ CCP +DFT P S PLR R
Sbjct: 82 GGGALAAPIQAPDLGHCHEPVDLPDPDTAPEISCCPTYSAGTVAVDFTPPPASSPLRVRP 141
Query: 131 PAHVAGAEYMAKYERAIALMKALPRSDPRSFYQQAHIHCAYCTGAYRQVGHPELAVQVHF 190
AH+ Y+ KYERA++LMK LP DPRSF QQ +HCAYC GAY QVG P L +Q+H
Sbjct: 142 AAHLVDIAYLTKYERAVSLMKKLPADDPRSFKQQWRVHCAYCDGAYDQVGFPGLEIQIHS 201
Query: 191 SWLFFPFHR 199
W FFP+HR
Sbjct: 202 CWFFFPWHR 210
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.139 0.455
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,485,355
Number of extensions: 598949
Number of successful extensions: 1869
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1867
Number of HSP's successfully gapped: 4
Length of query: 313
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 212
Effective length of database: 11,762,187
Effective search space: 2493583644
Effective search space used: 2493583644
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 156 (64.7 bits)