BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0770100 Os01g0770100|Os01g0770100
(629 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0770100 Protein of unknown function UPF0089 family pro... 548 e-156
Os01g0770000 Protein of unknown function UPF0089 family pro... 479 e-135
Os01g0681000 Protein of unknown function UPF0089 family pro... 235 6e-62
Os05g0556300 Protein of unknown function DUF1298 domain con... 69 8e-12
>Os01g0770100 Protein of unknown function UPF0089 family protein
Length = 629
Score = 548 bits (1413), Expect = e-156, Method: Compositional matrix adjust.
Identities = 276/312 (88%), Positives = 276/312 (88%)
Query: 1 MNAAGADTDTVLRKRQLTVRTTSSNXXXXXXXXXXXXXXXXTPPEPVSPSARLLEDFFIV 60
MNAAGADTDTVLRKRQLTVRTTSSN TPPEPVSPSARLLEDFFIV
Sbjct: 1 MNAAGADTDTVLRKRQLTVRTTSSNGGNGFRVGGGKGAAAATPPEPVSPSARLLEDFFIV 60
Query: 61 VVIGIATPVNDPVARAGIAAQFARYPRFRSIQVTDEDGGNPRWVRTTLNVDDHIIYPELD 120
VVIGIATPVNDPVARAGIAAQFARYPRFRSIQVTDEDGGNPRWVRTTLNVDDHIIYPELD
Sbjct: 61 VVIGIATPVNDPVARAGIAAQFARYPRFRSIQVTDEDGGNPRWVRTTLNVDDHIIYPELD 120
Query: 121 MDAVAADPDKAVEDYVASLSTKPMDESRPLWEFHVLDFPTSEAAATTAIRVHHSLGDGMS 180
MDAVAADPDKAVEDYVASLSTKPMDESRPLWEFHVLDFPTSEAAATTAIRVHHSLGDGMS
Sbjct: 121 MDAVAADPDKAVEDYVASLSTKPMDESRPLWEFHVLDFPTSEAAATTAIRVHHSLGDGMS 180
Query: 181 LLTLLMACTRSAADPARLPAMPPQPTRTGAIYARPRPPXXXXXXXXXXXXXXXXXXXXHT 240
LLTLLMACTRSAADPARLPAMPPQPTRTGAIYARPRPP HT
Sbjct: 181 LLTLLMACTRSAADPARLPAMPPQPTRTGAIYARPRPPASAGALAFAAWLWSFVALAWHT 240
Query: 241 VVDVASFFATTMFLKDPHTLFKRVKHGEFQRKRIVHRGLSFDDVKLVKNAMNCGARRLPL 300
VVDVASFFATTMFLKDPHTLFKRVKHGEFQRKRIVHRGLSFDDVKLVKNAMNCGARRLPL
Sbjct: 241 VVDVASFFATTMFLKDPHTLFKRVKHGEFQRKRIVHRGLSFDDVKLVKNAMNCGARRLPL 300
Query: 301 EAAAEGGGQRPE 312
EAAAEGGGQRPE
Sbjct: 301 EAAAEGGGQRPE 312
Score = 394 bits (1013), Expect = e-110, Method: Compositional matrix adjust.
Identities = 209/252 (82%), Positives = 209/252 (82%)
Query: 378 LWAPTSFPPXXXXXXXXXSTGHSPPXXXXXXXXXXXXXXXXXXXXXXVTAPDGGDTDTDE 437
LWAPTSFPP STGHSPP VTAPDGGDTDTDE
Sbjct: 378 LWAPTSFPPDADGGGGADSTGHSPPRSGRKRGAGQQRRQRRRSPRPRVTAPDGGDTDTDE 437
Query: 438 DIRLRTILLVNLRPTTSLHAYVDMINSGREDEVKWGNALGFIILPFFIGMHKDPLDYXXX 497
DIRLRTILLVNLRPTTSLHAYVDMINSGREDEVKWGNALGFIILPFFIGMHKDPLDY
Sbjct: 438 DIRLRTILLVNLRPTTSLHAYVDMINSGREDEVKWGNALGFIILPFFIGMHKDPLDYVRK 497
Query: 498 XXXXXXXXXSSLEVVFTHLAAEVILKLFGLKAAAAIFHRMISHTTISFSNMIGPVEQVEF 557
SSLEVVFTHLAAEVILKLFGLKAAAAIFHRMISHTTISFSNMIGPVEQVEF
Sbjct: 498 AKKVVDRKKSSLEVVFTHLAAEVILKLFGLKAAAAIFHRMISHTTISFSNMIGPVEQVEF 557
Query: 558 CGHPVVFIAPSGYGPPEALTVNFQSYVNTMMVNLAVDEAQFPDCHELLDDFSESLRQIKD 617
CGHPVVFIAPSGYGPPEALTVNFQSYVNTMMVNLAVDEAQFPDCHELLDDFSESLRQIKD
Sbjct: 558 CGHPVVFIAPSGYGPPEALTVNFQSYVNTMMVNLAVDEAQFPDCHELLDDFSESLRQIKD 617
Query: 618 AALSLGKHHTKA 629
AALSLGKHHTKA
Sbjct: 618 AALSLGKHHTKA 629
>Os01g0770000 Protein of unknown function UPF0089 family protein
Length = 518
Score = 479 bits (1234), Expect = e-135, Method: Compositional matrix adjust.
Identities = 243/295 (82%), Positives = 246/295 (83%), Gaps = 5/295 (1%)
Query: 4 AGADTDTVLRKRQLTVRTTSSN-----XXXXXXXXXXXXXXXXTPPEPVSPSARLLEDFF 58
AGA T LRKRQLTVRTTSSN TPPEPVSPSARL+EDFF
Sbjct: 3 AGAGAATALRKRQLTVRTTSSNGGNGFRVGDGGGGGSKGAAAATPPEPVSPSARLVEDFF 62
Query: 59 IVVVIGIATPVNDPVARAGIAAQFARYPRFRSIQVTDEDGGNPRWVRTTLNVDDHIIYPE 118
IVVVIGIATPVNDPVARAGIAAQ ARYPRFRSIQVTDEDGGNPRWVRTT+N+DDHIIYPE
Sbjct: 63 IVVVIGIATPVNDPVARAGIAAQLARYPRFRSIQVTDEDGGNPRWVRTTVNLDDHIIYPE 122
Query: 119 LDMDAVAADPDKAVEDYVASLSTKPMDESRPLWEFHVLDFPTSEAAATTAIRVHHSLGDG 178
LDMDAVAADPDKAVEDYVASLSTKPMDESRPLWEFHVLDFPTSEAAATTAIRVHHSLGDG
Sbjct: 123 LDMDAVAADPDKAVEDYVASLSTKPMDESRPLWEFHVLDFPTSEAAATTAIRVHHSLGDG 182
Query: 179 MSLLTLLMACTRSAADPARLPAMPPQPTRTGAIYARPRPPXXXXXXXXXXXXXXXXXXXX 238
MSLLTLLMACTRSAADPARLPAMPP PTR GAIYARPRPP
Sbjct: 183 MSLLTLLMACTRSAADPARLPAMPPLPTRAGAIYARPRPPASAGALAFAAWLWSFVALAW 242
Query: 239 HTVVDVASFFATTMFLKDPHTLFKRVKHGEFQRKRIVHRGLSFDDVKLVKNAMNC 293
HTVVDVASFFATTMFLKDPHTLFKRVKHGEFQRKRIVHRGLS DDVKLVKNAMNC
Sbjct: 243 HTVVDVASFFATTMFLKDPHTLFKRVKHGEFQRKRIVHRGLSLDDVKLVKNAMNC 297
Score = 381 bits (979), Expect = e-106, Method: Compositional matrix adjust.
Identities = 184/199 (92%), Positives = 186/199 (93%)
Query: 431 GDTDTDEDIRLRTILLVNLRPTTSLHAYVDMINSGREDEVKWGNALGFIILPFFIGMHKD 490
GD DTDEDIRLR+ILLVNLRPTTSLHAYVDMINSGREDEVKWGNALGFIILPFFIG+HKD
Sbjct: 320 GDMDTDEDIRLRSILLVNLRPTTSLHAYVDMINSGREDEVKWGNALGFIILPFFIGVHKD 379
Query: 491 PLDYXXXXXXXXXXXXSSLEVVFTHLAAEVILKLFGLKAAAAIFHRMISHTTISFSNMIG 550
PLDY SSLEVVFTHLAAEVILKLFGLKAAAAIFHRMISHTTISFSNMIG
Sbjct: 380 PLDYVRKAKKVVDRKKSSLEVVFTHLAAEVILKLFGLKAAAAIFHRMISHTTISFSNMIG 439
Query: 551 PVEQVEFCGHPVVFIAPSGYGPPEALTVNFQSYVNTMMVNLAVDEAQFPDCHELLDDFSE 610
PVEQVEFCGHPVVFIAPSGYGPPEALTVNFQSYVNTMMVNLAVDEAQFPDCHELLDDFSE
Sbjct: 440 PVEQVEFCGHPVVFIAPSGYGPPEALTVNFQSYVNTMMVNLAVDEAQFPDCHELLDDFSE 499
Query: 611 SLRQIKDAALSLGKHHTKA 629
SLRQIKDAALSLGKHHTKA
Sbjct: 500 SLRQIKDAALSLGKHHTKA 518
>Os01g0681000 Protein of unknown function UPF0089 family protein
Length = 531
Score = 235 bits (600), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 132/262 (50%), Positives = 164/262 (62%), Gaps = 14/262 (5%)
Query: 46 PVSPSARLLED----FFIVVVIGIATPVNDPVARAGIAAQFARYPRFRSIQVTDE--DGG 99
PVSP+ RL + +IV +G+A PV+ P RAGI A AR+PRF SIQV DE
Sbjct: 48 PVSPAGRLFREPHFSCYIVCTLGVAEPVDLPAVRAGIEATLARHPRFCSIQVLDELDKSA 107
Query: 100 NPRWVRTTLNVDDHIIYPELDMDAVAADPDKAVEDYVASLST--KPMDESRPLWEFHVLD 157
P WVRT +N+DDHII P+L +ADP+KAVEDYV+SLST PMD SRPLWE HVL
Sbjct: 108 KPMWVRTKVNLDDHIIVPDLGPTDTSADPEKAVEDYVSSLSTPSMPMDRSRPLWELHVLG 167
Query: 158 FPTSEAAATTAIRVHHSLGDGMSLLTLLMACTRSAADPARLPAMPPQPT----RTGAIYA 213
FPT+EAAAT A+R+HHSLGDG+SLL+LL+ACTR A DP +PA+P R G ++A
Sbjct: 168 FPTAEAAATVALRMHHSLGDGVSLLSLLIACTRRADDPDAIPALPSSAAGRRRREGPLHA 227
Query: 214 R-PRPPXXXXXXXXXXXXXXXXXXXXHTVVDVASFFATTM-FLKDPHTLFKRVKHGEFQR 271
PRPP HTVVDV F T + D T+ K + EF+
Sbjct: 228 LPPRPPLAAGALALAAWALSYLVLAWHTVVDVVCFTLTAASLMGDARTVLKGDEGAEFRP 287
Query: 272 KRIVHRGLSFDDVKLVKNAMNC 293
+R V+R +S DDVK +KNA+ C
Sbjct: 288 RRFVNRTISLDDVKNIKNAVGC 309
Score = 223 bits (569), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 97/189 (51%), Positives = 143/189 (75%)
Query: 431 GDTDTDEDIRLRTILLVNLRPTTSLHAYVDMINSGREDEVKWGNALGFIILPFFIGMHKD 490
G+++ ++I++RT L+VNLRPT LH M+ SG+ + VKWGN G++ILPF + H D
Sbjct: 332 GESEGKKNIKVRTALMVNLRPTPGLHELAKMMESGKNNGVKWGNRFGYMILPFHLAKHDD 391
Query: 491 PLDYXXXXXXXXXXXXSSLEVVFTHLAAEVILKLFGLKAAAAIFHRMISHTTISFSNMIG 550
PL+Y SS+E +FT+ +A++++KLFG+KAAA++ + M S+TT+SFSN+ G
Sbjct: 392 PLEYVRKATKVTRRKKSSMEAIFTYWSADMVVKLFGIKAAASLCYGMFSNTTLSFSNLAG 451
Query: 551 PVEQVEFCGHPVVFIAPSGYGPPEALTVNFQSYVNTMMVNLAVDEAQFPDCHELLDDFSE 610
P EQ+ FCG+P+V+I+P+ YG P ALT+++QSY+NT+ + LAVDE QFPD HELLDDF+E
Sbjct: 452 PSEQILFCGNPIVYISPTSYGHPHALTMHWQSYMNTIKLALAVDETQFPDAHELLDDFTE 511
Query: 611 SLRQIKDAA 619
S+R I++AA
Sbjct: 512 SMRLIREAA 520
>Os05g0556300 Protein of unknown function DUF1298 domain containing protein
Length = 97
Score = 69.3 bits (168), Expect = 8e-12, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 44/69 (63%)
Query: 460 DMINSGREDEVKWGNALGFIILPFFIGMHKDPLDYXXXXXXXXXXXXSSLEVVFTHLAAE 519
+M+NS + + +WGN +G+I+LPF I M DPL+Y SSLE +FT+ +
Sbjct: 17 EMMNSNKNNVARWGNLIGYIVLPFRIAMFHDPLEYIRQGKRTVDRKKSSLEAIFTYWSGN 76
Query: 520 VILKLFGLK 528
+I+KLFG+K
Sbjct: 77 LIVKLFGIK 85
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.135 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 18,317,543
Number of extensions: 718610
Number of successful extensions: 1854
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1845
Number of HSP's successfully gapped: 7
Length of query: 629
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 522
Effective length of database: 11,448,903
Effective search space: 5976327366
Effective search space used: 5976327366
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 159 (65.9 bits)