FiT-DB / Search/ Help/ Sample detail

Os01g0681000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function UPF0089 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9 (0.0342) R2 : 0.788
β1 : -1.45 (0.125) R2dD : 0.066 R2D : 0.074
β2 : 2.32 (0.114) R2dC : 0.326 R2C : 0.583
β3 : -1.7 (0.137) R2dE : 0.123 R2E : 0.391
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.161 (0.0729) R2dN8 : 0.00304 R2N8 : -0.000849
σ : 0.635
deviance : 185.94
__
_____
C
peak time of C : 19.2
E
wheather : temperature
threshold : 11.35
memory length : 52
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 19.8
open length of G : 16.4

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
178.58 0.628 8.99 -1.31 2.31 -1.68 2.07 2.13 -0.156 19.3 10.42 33 19.9 16.1
183.15 0.63 9.01 -1.43 2.32 -1.69 1.05 -- -0.168 19.3 11.47 51 19.8 16.4
185.52 0.634 9 -1.38 2.29 -1.77 -- 0.711 -0.126 19.2 11.87 34 19.9 16.6
185.94 0.635 9 -1.45 2.32 -1.7 -- -- -0.161 19.2 11.35 52 19.8 16.4
237.22 0.717 9.03 -1.4 -- -3.44 -- 0.322 -0.141 -- -15.27 382 20.4 14.2
241.94 0.729 9.05 -1.61 3.24 -- 1.15 -- -0.249 19 -- -- -- --
245.36 0.734 9.05 -1.63 3.25 -- -- -- -0.246 19 -- -- -- --
229.54 0.706 8.95 -1.51 -- -3.27 -- -- -0.173 -- -18.46 401 20.5 13.9
237.82 0.718 8.95 -- 2.33 -1.92 -- -- 0.0502 19 15.09 65 19.9 16.2
799.69 1.32 8.98 -1.7 -- -- -- -- -0.306 -- -- -- -- --
315.45 0.831 9.01 -- 3.27 -- -- -- -0.0645 18.9 -- -- -- --
284.86 0.786 8.87 -- -- -3.4 -- -- 0.0675 -- -1.153 399 20.5 13.8
875.73 1.38 8.93 -- -- -- -- -- -0.118 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 179.68 temperature 10.0 30 > th dose dependent rect. 20 16
16 190.90 radiation 30.0 270 < th dose dependent rect. 21 11
17 191.03 temperature 10.0 30 > th dose dependent rect. 12 8
22 192.03 humidity 90.0 30 < th dose dependent rect. 20 16
30 192.90 temperature 10.0 270 > th dose dependent rect. 12 5
31 192.96 humidity 60.0 90 > th dose dependent rect. 23 12
39 193.41 wind 7.0 10 < th dose independent rect. 20 16
40 193.41 temperature 20.0 30 > th dose dependent rect. 4 8
41 193.47 humidity 50.0 90 > th dose dependent rect. 23 10
51 194.07 temperature 20.0 30 > th dose dependent rect. 8 4
53 194.18 temperature 20.0 30 > th dose independent rect. 12 8
54 194.31 temperature 15.0 270 > th dose independent rect. 7 14
56 194.38 humidity 90.0 270 < th dose independent rect. 6 6
57 194.39 temperature 25.0 90 > th dose independent rect. 20 16
66 194.77 temperature 15.0 90 > th dose independent rect. 19 17
70 194.93 temperature 20.0 270 > th dose independent rect. 12 5
83 195.41 precipitation 0.1 10 < th dose independent rect. 20 16
84 195.41 precipitation 0.1 10 < th dose dependent rect. 20 16
106 195.95 humidity 90.0 270 < th dose independent rect. 7 4
113 196.13 temperature 15.0 10 > th dose independent rect. 20 16
126 196.53 temperature 15.0 270 > th dose independent rect. 17 19
130 196.65 temperature 10.0 270 > th dose independent rect. 21 10
131 196.65 temperature 30.0 270 < th dose independent rect. 21 10
132 196.65 humidity 50.0 270 > th dose independent rect. 21 10
134 196.65 atmosphere 995.0 270 > th dose independent rect. 21 10
135 196.65 radiation 30.0 270 < th dose independent rect. 21 10
138 196.66 wind 9.0 270 < th dose independent rect. 21 10
147 196.85 temperature 10.0 270 > th dose dependent rect. 2 10
148 196.86 wind 7.0 270 < th dose independent rect. 17 19
149 196.87 wind 9.0 270 < th dose independent rect. 7 14
158 197.10 temperature 25.0 10 > th dose independent rect. 9 3
162 197.17 precipitation 0.1 270 < th dose independent rect. 17 19
163 197.17 precipitation 0.1 270 < th dose dependent rect. 17 19
167 197.30 precipitation 0.1 10 < th dose independent rect. 12 8
168 197.30 precipitation 0.1 10 < th dose dependent rect. 12 8
182 197.69 temperature 10.0 10 > th dose independent rect. 12 8
184 197.69 atmosphere 1015.0 10 < th dose independent rect. 12 8
186 197.69 atmosphere 995.0 10 > th dose independent rect. 20 16
192 197.84 atmosphere 995.0 270 > th dose independent rect. 17 19
194 197.87 wind 1.0 10 > th dose independent rect. 12 8
196 197.89 wind 9.0 10 < th dose independent rect. 12 8
199 197.98 humidity 50.0 270 > th dose independent rect. 17 18
200 198.02 wind 1.0 90 > th dose independent rect. 12 7
211 198.18 humidity 50.0 270 > th dose independent rect. 16 20
214 198.19 humidity 50.0 270 > th dose dependent rect. 21 11
216 198.20 temperature 10.0 90 > th dose independent rect. 12 7
218 198.20 atmosphere 1015.0 90 < th dose independent rect. 12 7
220 198.20 atmosphere 995.0 90 > th dose independent rect. 19 17
223 198.25 wind 1.0 270 > th dose independent rect. 12 5
225 198.27 wind 9.0 90 < th dose independent rect. 12 7
233 198.34 atmosphere 1015.0 270 < th dose independent rect. 7 14
246 198.49 wind 9.0 270 < th dose independent rect. 12 5
258 198.69 temperature 10.0 270 > th dose independent rect. 12 5
260 198.69 atmosphere 1015.0 270 < th dose independent rect. 12 5
270 198.80 precipitation 0.1 270 < th dose independent rect. 12 5
271 198.80 precipitation 0.1 270 < th dose dependent rect. 12 5
281 198.92 humidity 90.0 30 < th dose dependent rect. 24 12
287 198.94 humidity 90.0 30 < th dose dependent rect. 2 10
289 198.96 temperature 10.0 1440 > th dose independent rect. 13 8
300 198.96 temperature 10.0 1440 > th dose independent rect. 21 16
303 198.96 atmosphere 995.0 1440 > th dose independent rect. 21 16
319 199.26 radiation 1.0 270 > th dose independent rect. 5 7
320 199.26 humidity 90.0 30 < th dose dependent rect. 5 7
332 199.32 humidity 90.0 30 < th dose dependent rect. 8 4
335 199.35 precipitation 0.1 270 < th dose independent rect. 7 14
337 199.35 precipitation 0.1 270 < th dose dependent rect. 7 14
338 199.35 humidity 60.0 90 > th dose dependent rect. 23 18
352 199.47 wind 9.0 30 < th dose dependent rect. 20 16
367 199.67 temperature 30.0 270 < th dose independent rect. 17 18
375 199.75 wind 7.0 90 < th dose independent rect. 9 14
381 199.84 radiation 10.0 270 < th dose dependent rect. 22 15
388 199.96 humidity 60.0 90 > th dose dependent rect. 23 16
415 200.18 humidity 90.0 90 < th dose dependent sin 7 NA
432 200.36 humidity 90.0 270 < th dose independent rect. 12 5
439 200.46 humidity 50.0 90 > th dose independent rect. 19 17
445 200.56 wind 1.0 90 > th dose dependent rect. 12 7
446 200.58 temperature 30.0 270 < th dose independent rect. 16 7
449 200.62 temperature 25.0 30 > th dose dependent rect. 24 12
484 200.94 humidity 90.0 90 < th dose independent rect. 19 17
514 201.15 atmosphere 995.0 90 > th dose independent rect. 12 7
519 201.19 atmosphere 995.0 10 > th dose independent rect. 12 8
528 201.27 atmosphere 995.0 270 > th dose independent rect. 12 5
564 201.58 humidity 90.0 90 < th dose independent rect. 12 7
568 201.64 wind 9.0 90 < th dose dependent rect. 9 14
586 201.84 atmosphere 995.0 270 > th dose independent rect. 7 14
597 201.93 radiation 1.0 270 > th dose independent rect. 12 5
613 202.04 atmosphere 1015.0 30 < th dose dependent rect. 12 8
616 202.06 humidity 70.0 270 > th dose independent rect. 17 5
618 202.08 radiation 1.0 270 < th dose independent rect. 22 17
670 202.51 wind 1.0 30 > th dose independent rect. 12 20
726 202.99 precipitation 0.1 270 < th dose independent rect. 21 10
727 202.99 radiation 1.0 270 > th dose independent rect. 11 18
728 202.99 precipitation 0.1 270 < th dose dependent rect. 21 10
735 203.05 radiation 1.0 270 > th dose independent rect. 11 8
756 203.14 atmosphere 1015.0 10 < th dose independent rect. 20 16
777 203.30 atmosphere 1015.0 270 < th dose independent rect. 22 9
817 203.59 atmosphere 1015.0 90 < th dose independent rect. 9 14
838 203.75 atmosphere 1015.0 270 < th dose dependent rect. 12 5
843 203.77 humidity 80.0 90 < th dose independent rect. 23 13
860 203.93 radiation 20.0 270 < th dose dependent rect. 16 7
908 204.12 radiation 10.0 270 < th dose independent rect. 16 7
913 204.16 humidity 50.0 90 > th dose dependent sin 6 NA
961 204.39 wind 9.0 270 < th dose dependent rect. 17 19
998 204.60 radiation 10.0 270 > th dose independent rect. 7 4