Os01g0770000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function UPF0089 family protein.
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Os01g0770000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function UPF0089 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 97.37 | 0.464 | 9.96 | -2.24 | 1.82 | -1.25 | -0.268 | 0.642 | -0.402 | 10.7 | 23.02 | 1930 | -- | -- |
| 98.26 | 0.462 | 9.94 | -2.01 | 1.83 | -1.26 | -0.201 | -- | -0.351 | 10.7 | 23 | 1929 | -- | -- |
| 97.66 | 0.46 | 9.96 | -2.24 | 1.82 | -1.25 | -- | 0.62 | -0.401 | 10.7 | 23.02 | 1930 | -- | -- |
| 98.46 | 0.462 | 9.94 | -2.01 | 1.82 | -1.25 | -- | -- | -0.34 | 10.7 | 23.1 | 1932 | -- | -- |
| 249.91 | 0.74 | 9.97 | -2.07 | -- | -1.22 | -- | 0.347 | -0.251 | -- | 22.4 | 1614 | -- | -- |
| 162.72 | 0.598 | 9.82 | -1.5 | 1.75 | -- | -0.245 | -- | 0.176 | 10.8 | -- | -- | -- | -- |
| 162.97 | 0.598 | 9.82 | -1.51 | 1.75 | -- | -- | -- | 0.175 | 10.7 | -- | -- | -- | -- |
| 250.66 | 0.741 | 9.96 | -1.97 | -- | -1.22 | -- | -- | -0.225 | -- | 22.4 | 1614 | -- | -- |
| 192.2 | 0.646 | 9.84 | -- | 1.8 | -0.822 | -- | -- | 0.0531 | 10.9 | 22.9 | 1449 | -- | -- |
| 351.81 | 0.876 | 9.87 | -1.54 | -- | -- | -- | -- | 0.165 | -- | -- | -- | -- | -- |
| 222.94 | 0.698 | 9.79 | -- | 1.76 | -- | -- | -- | 0.343 | 10.8 | -- | -- | -- | -- |
| 348.41 | 0.872 | 9.89 | -- | -- | -0.964 | -- | -- | 0.0654 | -- | 22.5 | 1595 | -- | -- |
| 414.63 | 0.95 | 9.83 | -- | -- | -- | -- | -- | 0.336 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 89.87 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 13 |
| 2 | 90.54 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 19 |
| 26 | 95.09 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 21 |
| 30 | 95.47 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 18 |
| 32 | 95.52 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 66 | 97.71 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 12 |
| 68 | 97.79 | temperature | 30 | 720 | < th | dose dependent | sin | 12 | NA |
| 77 | 98.08 | temperature | 30 | 1440 | < th | dose dependent | rect. | 11 | 13 |
| 83 | 98.22 | temperature | 30 | 1440 | < th | dose dependent | rect. | 13 | 10 |
| 103 | 98.49 | temperature | 30 | 1440 | < th | dose dependent | sin | 19 | NA |
| 107 | 98.51 | temperature | 10 | 720 | > th | dose dependent | sin | 11 | NA |
| 116 | 98.64 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 19 |
| 203 | 99.33 | temperature | 30 | 1440 | < th | dose dependent | rect. | 11 | 20 |
| 234 | 99.48 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 22 |
| 255 | 99.61 | temperature | 20 | 1440 | > th | dose dependent | rect. | 14 | 10 |
| 263 | 99.65 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 14 |
| 291 | 99.74 | temperature | 30 | 1440 | < th | dose dependent | no | NA | NA |
| 305 | 99.78 | temperature | 20 | 1440 | > th | dose dependent | sin | 17 | NA |
| 309 | 99.79 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 377 | 100.03 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 2 |
| 436 | 100.18 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 5 |
| 466 | 100.23 | temperature | 15 | 1440 | > th | dose dependent | rect. | 4 | 20 |
| 677 | 100.57 | temperature | 15 | 1440 | > th | dose dependent | no | NA | NA |
| 681 | 100.58 | temperature | 25 | 1440 | < th | dose independent | rect. | 9 | 15 |
| 984 | 101.00 | temperature | 25 | 1440 | > th | dose independent | rect. | 12 | 11 |
| 994 | 101.01 | temperature | 25 | 1440 | > th | dose independent | rect. | 9 | 15 |