BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0770000 Os01g0770000|AK120549
(518 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0770000 Protein of unknown function UPF0089 family pro... 935 0.0
Os01g0681000 Protein of unknown function UPF0089 family pro... 491 e-139
Os01g0770100 Protein of unknown function UPF0089 family pro... 478 e-135
Os05g0556300 Protein of unknown function DUF1298 domain con... 67 2e-11
>Os01g0770000 Protein of unknown function UPF0089 family protein
Length = 518
Score = 935 bits (2416), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 465/518 (89%), Positives = 465/518 (89%)
Query: 1 MDAGAGAATALRKRQLTVRTTSSNXXXXXXXXXXXXXXXXXXXXXTPPEPVSPSARLVED 60
MDAGAGAATALRKRQLTVRTTSSN TPPEPVSPSARLVED
Sbjct: 1 MDAGAGAATALRKRQLTVRTTSSNGGNGFRVGDGGGGGSKGAAAATPPEPVSPSARLVED 60
Query: 61 FFIVVVIGIATPVNDPVARAGIAAQLARYPRFRSIQVTDEDGGNPRWVRTTVNLDDHIIY 120
FFIVVVIGIATPVNDPVARAGIAAQLARYPRFRSIQVTDEDGGNPRWVRTTVNLDDHIIY
Sbjct: 61 FFIVVVIGIATPVNDPVARAGIAAQLARYPRFRSIQVTDEDGGNPRWVRTTVNLDDHIIY 120
Query: 121 PELDMDAVAADPDKAVEDYVASLSTKPMDESRPLWEFHVLDFPTSEAAATTAIRVHHSLG 180
PELDMDAVAADPDKAVEDYVASLSTKPMDESRPLWEFHVLDFPTSEAAATTAIRVHHSLG
Sbjct: 121 PELDMDAVAADPDKAVEDYVASLSTKPMDESRPLWEFHVLDFPTSEAAATTAIRVHHSLG 180
Query: 181 DGMSLLTLLMACTRSAADPARLPAMPPLPTRAGAIYARPRPPXXXXXXXXXXXXXXXXXX 240
DGMSLLTLLMACTRSAADPARLPAMPPLPTRAGAIYARPRPP
Sbjct: 181 DGMSLLTLLMACTRSAADPARLPAMPPLPTRAGAIYARPRPPASAGALAFAAWLWSFVAL 240
Query: 241 XXHTVVDVASFFATTMFLKDPHTLFKRVKHGEFQRKRIVHRGLSLDDVKLVKNAMNCTVN 300
HTVVDVASFFATTMFLKDPHTLFKRVKHGEFQRKRIVHRGLSLDDVKLVKNAMNCTVN
Sbjct: 241 AWHTVVDVASFFATTMFLKDPHTLFKRVKHGEFQRKRIVHRGLSLDDVKLVKNAMNCTVN 300
Query: 301 DVLVGITYSALSRYYYRKSGDMDTDEDIRLRSILLVNLRPTTSLHAYVDMINSGREDEVK 360
DVLVGITYSALSRYYYRKSGDMDTDEDIRLRSILLVNLRPTTSLHAYVDMINSGREDEVK
Sbjct: 301 DVLVGITYSALSRYYYRKSGDMDTDEDIRLRSILLVNLRPTTSLHAYVDMINSGREDEVK 360
Query: 361 WGNALGFIILPFFIGVHKDPLDYXXXXXXXXXXXXSSLEVVFTHLAAEVILKLFGLKAAA 420
WGNALGFIILPFFIGVHKDPLDY SSLEVVFTHLAAEVILKLFGLKAAA
Sbjct: 361 WGNALGFIILPFFIGVHKDPLDYVRKAKKVVDRKKSSLEVVFTHLAAEVILKLFGLKAAA 420
Query: 421 AIFHRMISHTTISFSNMIGPVEQVEFCGHPVVFIAPSGYGPPEALTVNFQSYVNTMMVNL 480
AIFHRMISHTTISFSNMIGPVEQVEFCGHPVVFIAPSGYGPPEALTVNFQSYVNTMMVNL
Sbjct: 421 AIFHRMISHTTISFSNMIGPVEQVEFCGHPVVFIAPSGYGPPEALTVNFQSYVNTMMVNL 480
Query: 481 AVDEAQFPDCHELLDDFSESLRQIKDAALSLGKHHTKA 518
AVDEAQFPDCHELLDDFSESLRQIKDAALSLGKHHTKA
Sbjct: 481 AVDEAQFPDCHELLDDFSESLRQIKDAALSLGKHHTKA 518
>Os01g0681000 Protein of unknown function UPF0089 family protein
Length = 531
Score = 491 bits (1264), Expect = e-139, Method: Compositional matrix adjust.
Identities = 247/473 (52%), Positives = 329/473 (69%), Gaps = 14/473 (2%)
Query: 50 PVSPSARLVED----FFIVVVIGIATPVNDPVARAGIAAQLARYPRFRSIQVTDE--DGG 103
PVSP+ RL + +IV +G+A PV+ P RAGI A LAR+PRF SIQV DE
Sbjct: 48 PVSPAGRLFREPHFSCYIVCTLGVAEPVDLPAVRAGIEATLARHPRFCSIQVLDELDKSA 107
Query: 104 NPRWVRTTVNLDDHIIYPELDMDAVAADPDKAVEDYVASLSTK--PMDESRPLWEFHVLD 161
P WVRT VNLDDHII P+L +ADP+KAVEDYV+SLST PMD SRPLWE HVL
Sbjct: 108 KPMWVRTKVNLDDHIIVPDLGPTDTSADPEKAVEDYVSSLSTPSMPMDRSRPLWELHVLG 167
Query: 162 FPTSEAAATTAIRVHHSLGDGMSLLTLLMACTRSAADPARLPAMPPLPT----RAGAIYA 217
FPT+EAAAT A+R+HHSLGDG+SLL+LL+ACTR A DP +PA+P R G ++A
Sbjct: 168 FPTAEAAATVALRMHHSLGDGVSLLSLLIACTRRADDPDAIPALPSSAAGRRRREGPLHA 227
Query: 218 RP-RPPXXXXXXXXXXXXXXXXXXXXHTVVDVASFFATTM-FLKDPHTLFKRVKHGEFQR 275
P RPP HTVVDV F T + D T+ K + EF+
Sbjct: 228 LPPRPPLAAGALALAAWALSYLVLAWHTVVDVVCFTLTAASLMGDARTVLKGDEGAEFRP 287
Query: 276 KRIVHRGLSLDDVKLVKNAMNCTVNDVLVGITYSALSRYYYRKSGDMDTDEDIRLRSILL 335
+R V+R +SLDDVK +KNA+ CTVNDVLVG++ +ALSRYY+R++G+ + ++I++R+ L+
Sbjct: 288 RRFVNRTISLDDVKNIKNAVGCTVNDVLVGLSSAALSRYYFRRTGESEGKKNIKVRTALM 347
Query: 336 VNLRPTTSLHAYVDMINSGREDEVKWGNALGFIILPFFIGVHKDPLDYXXXXXXXXXXXX 395
VNLRPT LH M+ SG+ + VKWGN G++ILPF + H DPL+Y
Sbjct: 348 VNLRPTPGLHELAKMMESGKNNGVKWGNRFGYMILPFHLAKHDDPLEYVRKATKVTRRKK 407
Query: 396 SSLEVVFTHLAAEVILKLFGLKAAAAIFHRMISHTTISFSNMIGPVEQVEFCGHPVVFIA 455
SS+E +FT+ +A++++KLFG+KAAA++ + M S+TT+SFSN+ GP EQ+ FCG+P+V+I+
Sbjct: 408 SSMEAIFTYWSADMVVKLFGIKAAASLCYGMFSNTTLSFSNLAGPSEQILFCGNPIVYIS 467
Query: 456 PSGYGPPEALTVNFQSYVNTMMVNLAVDEAQFPDCHELLDDFSESLRQIKDAA 508
P+ YG P ALT+++QSY+NT+ + LAVDE QFPD HELLDDF+ES+R I++AA
Sbjct: 468 PTSYGHPHALTMHWQSYMNTIKLALAVDETQFPDAHELLDDFTESMRLIREAA 520
>Os01g0770100 Protein of unknown function UPF0089 family protein
Length = 629
Score = 478 bits (1231), Expect = e-135, Method: Compositional matrix adjust.
Identities = 243/295 (82%), Positives = 246/295 (83%), Gaps = 5/295 (1%)
Query: 3 AGAGAATALRKRQLTVRTTSSNXXXXXXXXXXXXXXXXXXXXXTPPEPVSPSARLVEDFF 62
AGA T LRKRQLTVRTTSSN TPPEPVSPSARL+EDFF
Sbjct: 4 AGADTDTVLRKRQLTVRTTSSNGGNGFRVGGGKGAAAA-----TPPEPVSPSARLLEDFF 58
Query: 63 IVVVIGIATPVNDPVARAGIAAQLARYPRFRSIQVTDEDGGNPRWVRTTVNLDDHIIYPE 122
IVVVIGIATPVNDPVARAGIAAQ ARYPRFRSIQVTDEDGGNPRWVRTT+N+DDHIIYPE
Sbjct: 59 IVVVIGIATPVNDPVARAGIAAQFARYPRFRSIQVTDEDGGNPRWVRTTLNVDDHIIYPE 118
Query: 123 LDMDAVAADPDKAVEDYVASLSTKPMDESRPLWEFHVLDFPTSEAAATTAIRVHHSLGDG 182
LDMDAVAADPDKAVEDYVASLSTKPMDESRPLWEFHVLDFPTSEAAATTAIRVHHSLGDG
Sbjct: 119 LDMDAVAADPDKAVEDYVASLSTKPMDESRPLWEFHVLDFPTSEAAATTAIRVHHSLGDG 178
Query: 183 MSLLTLLMACTRSAADPARLPAMPPLPTRAGAIYARPRPPXXXXXXXXXXXXXXXXXXXX 242
MSLLTLLMACTRSAADPARLPAMPP PTR GAIYARPRPP
Sbjct: 179 MSLLTLLMACTRSAADPARLPAMPPQPTRTGAIYARPRPPASAGALAFAAWLWSFVALAW 238
Query: 243 HTVVDVASFFATTMFLKDPHTLFKRVKHGEFQRKRIVHRGLSLDDVKLVKNAMNC 297
HTVVDVASFFATTMFLKDPHTLFKRVKHGEFQRKRIVHRGLS DDVKLVKNAMNC
Sbjct: 239 HTVVDVASFFATTMFLKDPHTLFKRVKHGEFQRKRIVHRGLSFDDVKLVKNAMNC 293
Score = 366 bits (940), Expect = e-101, Method: Compositional matrix adjust.
Identities = 177/191 (92%), Positives = 179/191 (93%)
Query: 328 IRLRSILLVNLRPTTSLHAYVDMINSGREDEVKWGNALGFIILPFFIGVHKDPLDYXXXX 387
IRLR+ILLVNLRPTTSLHAYVDMINSGREDEVKWGNALGFIILPFFIG+HKDPLDY
Sbjct: 439 IRLRTILLVNLRPTTSLHAYVDMINSGREDEVKWGNALGFIILPFFIGMHKDPLDYVRKA 498
Query: 388 XXXXXXXXSSLEVVFTHLAAEVILKLFGLKAAAAIFHRMISHTTISFSNMIGPVEQVEFC 447
SSLEVVFTHLAAEVILKLFGLKAAAAIFHRMISHTTISFSNMIGPVEQVEFC
Sbjct: 499 KKVVDRKKSSLEVVFTHLAAEVILKLFGLKAAAAIFHRMISHTTISFSNMIGPVEQVEFC 558
Query: 448 GHPVVFIAPSGYGPPEALTVNFQSYVNTMMVNLAVDEAQFPDCHELLDDFSESLRQIKDA 507
GHPVVFIAPSGYGPPEALTVNFQSYVNTMMVNLAVDEAQFPDCHELLDDFSESLRQIKDA
Sbjct: 559 GHPVVFIAPSGYGPPEALTVNFQSYVNTMMVNLAVDEAQFPDCHELLDDFSESLRQIKDA 618
Query: 508 ALSLGKHHTKA 518
ALSLGKHHTKA
Sbjct: 619 ALSLGKHHTKA 629
>Os05g0556300 Protein of unknown function DUF1298 domain containing protein
Length = 97
Score = 67.4 bits (163), Expect = 2e-11, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 44/69 (63%)
Query: 349 DMINSGREDEVKWGNALGFIILPFFIGVHKDPLDYXXXXXXXXXXXXSSLEVVFTHLAAE 408
+M+NS + + +WGN +G+I+LPF I + DPL+Y SSLE +FT+ +
Sbjct: 17 EMMNSNKNNVARWGNLIGYIVLPFRIAMFHDPLEYIRQGKRTVDRKKSSLEAIFTYWSGN 76
Query: 409 VILKLFGLK 417
+I+KLFG+K
Sbjct: 77 LIVKLFGIK 85
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.136 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,592,764
Number of extensions: 668990
Number of successful extensions: 1799
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1791
Number of HSP's successfully gapped: 5
Length of query: 518
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 413
Effective length of database: 11,553,331
Effective search space: 4771525703
Effective search space used: 4771525703
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 158 (65.5 bits)