Os01g0770100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function UPF0089 family protein.
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Os01g0770100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function UPF0089 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 72.64 | 0.4 | 11.9 | -1.6 | 1.46 | -1.29 | -0.149 | 0.608 | -0.133 | 11.4 | 23.9 | 1487 | -- | -- |
| 72.14 | 0.396 | 11.9 | -1.37 | 1.44 | -1.29 | -0.152 | -- | -0.057 | 11.3 | 23.15 | 1630 | -- | -- |
| 72.73 | 0.397 | 11.9 | -1.6 | 1.46 | -1.29 | -- | 0.602 | -0.133 | 11.4 | 23.9 | 1487 | -- | -- |
| 72.28 | 0.396 | 11.9 | -1.38 | 1.44 | -1.29 | -- | -- | -0.0531 | 11.3 | 23.14 | 1630 | -- | -- |
| 174.8 | 0.619 | 11.9 | -1.41 | -- | -1.12 | -- | 0.229 | 0.013 | -- | 23.3 | 1607 | -- | -- |
| 142.92 | 0.56 | 11.8 | -0.85 | 1.43 | -- | -0.138 | -- | 0.485 | 11.2 | -- | -- | -- | -- |
| 143 | 0.56 | 11.8 | -0.856 | 1.43 | -- | -- | -- | 0.485 | 11.2 | -- | -- | -- | -- |
| 174.12 | 0.617 | 11.9 | -1.34 | -- | -1.14 | -- | -- | 0.0429 | -- | 23.1 | 1630 | -- | -- |
| 117.04 | 0.504 | 11.9 | -- | 1.49 | -1.06 | -- | -- | 0.178 | 11.2 | 23.1 | 1491 | -- | -- |
| 270.08 | 0.768 | 11.8 | -0.891 | -- | -- | -- | -- | 0.472 | -- | -- | -- | -- | -- |
| 162.32 | 0.596 | 11.8 | -- | 1.43 | -- | -- | -- | 0.58 | 11.3 | -- | -- | -- | -- |
| 218.96 | 0.691 | 11.9 | -- | -- | -0.957 | -- | -- | 0.251 | -- | 23.1 | 1630 | -- | -- |
| 291.02 | 0.796 | 11.8 | -- | -- | -- | -- | -- | 0.571 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 65.81 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 19 |
| 6 | 68.39 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 33 | 71.92 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 19 |
| 37 | 72.16 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 22 |
| 46 | 72.49 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 8 |
| 54 | 72.68 | temperature | 30 | 1440 | < th | dose dependent | rect. | 15 | 8 |
| 56 | 72.72 | temperature | 20 | 1440 | > th | dose dependent | sin | 16 | NA |
| 69 | 72.90 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 22 |
| 90 | 73.09 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 16 |
| 91 | 73.09 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 19 |
| 118 | 73.19 | temperature | 30 | 1440 | < th | dose dependent | rect. | 11 | 13 |
| 140 | 73.29 | temperature | 30 | 1440 | < th | dose dependent | rect. | 8 | 16 |
| 158 | 73.35 | temperature | 30 | 1440 | < th | dose dependent | sin | 18 | NA |
| 217 | 73.56 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 2 |
| 227 | 73.58 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 22 |
| 232 | 73.60 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 21 |
| 239 | 73.61 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 251 | 73.64 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 372 | 73.97 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 379 | 73.97 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 405 | 74.06 | temperature | 25 | 1440 | < th | dose independent | rect. | 9 | 15 |
| 465 | 74.18 | temperature | 25 | 1440 | < th | dose independent | rect. | 11 | 13 |
| 490 | 74.23 | temperature | 10 | 270 | > th | dose dependent | rect. | 2 | 23 |
| 495 | 74.24 | temperature | 30 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 523 | 74.29 | temperature | 30 | 1440 | < th | dose dependent | no | NA | NA |
| 559 | 74.34 | temperature | 25 | 1440 | > th | dose independent | rect. | 11 | 13 |
| 592 | 74.38 | temperature | 25 | 1440 | < th | dose independent | rect. | 13 | 11 |
| 652 | 74.43 | temperature | 25 | 1440 | > th | dose independent | rect. | 9 | 15 |
| 668 | 74.44 | temperature | 25 | 1440 | < th | dose independent | rect. | 5 | 19 |
| 721 | 74.48 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 23 |