BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0748300 Os01g0748300|Os01g0748300
         (142 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0748300  Protein of unknown function DUF584 family protein   287   1e-78
Os05g0531100  Protein of unknown function DUF584 family protein    82   9e-17
Os05g0518800  Protein of unknown function DUF584 family protein    80   7e-16
Os12g0156000  Protein of unknown function DUF584 family protein    64   2e-11

>Os01g0748300 Protein of unknown function DUF584 family protein
          Length = 142

 Score =  287 bits (735), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 142/142 (100%), Positives = 142/142 (100%)

Query: 1   MEELQEADVLWPAEHHRDYERCRHHHHAAQPAVCPVAPLRPSSSSAPVRIPAPTTTTFAG 60
           MEELQEADVLWPAEHHRDYERCRHHHHAAQPAVCPVAPLRPSSSSAPVRIPAPTTTTFAG
Sbjct: 1   MEELQEADVLWPAEHHRDYERCRHHHHAAQPAVCPVAPLRPSSSSAPVRIPAPTTTTFAG 60

Query: 61  ARRGYYEDDGTRTDYSAGAGASSRIVPPHVYVAAARRGSEGRTVASSVCVGHGRTLKGRD 120
           ARRGYYEDDGTRTDYSAGAGASSRIVPPHVYVAAARRGSEGRTVASSVCVGHGRTLKGRD
Sbjct: 61  ARRGYYEDDGTRTDYSAGAGASSRIVPPHVYVAAARRGSEGRTVASSVCVGHGRTLKGRD 120

Query: 121 LRAVRNAVLHMTGFLGGGPDEY 142
           LRAVRNAVLHMTGFLGGGPDEY
Sbjct: 121 LRAVRNAVLHMTGFLGGGPDEY 142



>Os05g0531100 Protein of unknown function DUF584 family protein
          Length = 142

 Score = 82.4 bits (202), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 60/144 (41%), Positives = 69/144 (47%), Gaps = 13/144 (9%)

Query: 1   MEELQEADVLWP--AEHHRDYERCRHHHHAAQPAVCPVAPLRPSSSSAPVRIPAPTTTTF 58
           MEE QEAD+LWP  AE + D          +  A  PV     SS SAPV I A      
Sbjct: 1   MEEFQEADILWPEPAEDNSDDGAVVVTTTPSPVARRPVGSPESSSLSAPVEIAASRRKRR 60

Query: 59  AGARRGYY-------EDDGTRTDYSAGAGASSRIVPPHVYVAAARRGSEGRTVASSVCVG 111
           + +    Y       +DD          G    + PPH  V   RR   GRT A S+C G
Sbjct: 61  SRSWASEYNMFDQTNDDDDAVKKKMMNNGVM--VAPPHAIVD--RRRLRGRTAAYSMCAG 116

Query: 112 HGRTLKGRDLRAVRNAVLHMTGFL 135
            GRTLKGRDLR VRN VL MTGF+
Sbjct: 117 KGRTLKGRDLRNVRNLVLQMTGFI 140



>Os05g0518800 Protein of unknown function DUF584 family protein
          Length = 130

 Score = 79.7 bits (195), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 69/146 (47%), Positives = 77/146 (52%), Gaps = 29/146 (19%)

Query: 1   MEELQEADVLWPAEHHRDYERCRH-----HHHAAQPAVCPVAPLR--PSSSSAPVRIP-- 51
           MEE QEADVLWP +HH+   R        H       V      R    + SAPV IP  
Sbjct: 1   MEEFQEADVLWP-DHHQHLRRDDDARRRRHQEQQHGGVDDADDSRGGTGTPSAPVGIPVT 59

Query: 52  -APTTTTFAGARRGYYEDDGTRTDYSAGAGASSRIVPPHVYVAA-ARRGSEGRTVASSVC 109
            APTT                R  + + A A++  VPPH  VAA ARR SE R  A SVC
Sbjct: 60  RAPTTR---------------RISHGSTAPAAA-FVPPHELVAARARRCSEER-AAFSVC 102

Query: 110 VGHGRTLKGRDLRAVRNAVLHMTGFL 135
           VG+GRTLKGRDLR VR AVL MTGFL
Sbjct: 103 VGNGRTLKGRDLRDVRTAVLRMTGFL 128



>Os12g0156000 Protein of unknown function DUF584 family protein
          Length = 165

 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/150 (38%), Positives = 72/150 (48%), Gaps = 27/150 (18%)

Query: 3   ELQEADVLWPA-----------EHHRDYERCRHHHHAAQPAVCPV---APLRPSSS---S 45
           +L E DVLWPA           +     ++ R    A + A  PV   APL P++    S
Sbjct: 25  DLLERDVLWPASSAPGLLAALPDDEGSKKKKRAGPAAVRSASRPVPETAPLTPTAGAARS 84

Query: 46  APVRIPAPTTTTFAGARRGYYEDDGTRTDYSAGAGASSRIVPPHVYVAAARRGSEGRTVA 105
           APVRIP+          R        ++      G ++ +VPPH  VA  RR +      
Sbjct: 85  APVRIPSEAAAAAGRRGRWAA----AQSSVGGEDGDAAMVVPPHEVVA--RRAA----AH 134

Query: 106 SSVCVGHGRTLKGRDLRAVRNAVLHMTGFL 135
           SSV  G GRTLKGRDLR VRNAVL  TGFL
Sbjct: 135 SSVLEGAGRTLKGRDLRRVRNAVLRRTGFL 164



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.133    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,303,245
Number of extensions: 306617
Number of successful extensions: 2060
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 2058
Number of HSP's successfully gapped: 8
Length of query: 142
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 51
Effective length of database: 12,284,327
Effective search space: 626500677
Effective search space used: 626500677
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 151 (62.8 bits)