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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0531100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF584 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.06 (0.0478) R2 : 0.562
β1 : -3.08 (0.176) R2dD : 0.313 R2D : 0.181
β2 : 1.75 (0.117) R2dC : 0.228 R2C : 0.151
β3 : 1.41 (0.165) R2dE : 0.0794 R2E : -0.0196
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.915 (0.103) R2dN8 : 0.105 R2N8 : 0.0574
σ : 0.887
deviance : 362.62
__
_____
C
peak time of C : 10.6
E
wheather : temperature
threshold : 32.59
memory length : 862
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
360.13 0.892 4.95 -2.16 1.77 0.528 0.0896 8.52 -0.916 10.4 31.49 807 -- --
362.79 0.887 5.04 -3.07 1.73 1.37 -0.0413 -- -0.91 10.6 32.6 864 -- --
360.01 0.884 4.95 -2.12 1.76 0.491 -- 8.86 -0.917 10.5 31.7 819 -- --
362.62 0.887 5.06 -3.08 1.75 1.41 -- -- -0.915 10.6 32.59 862 -- --
516.82 1.06 4.95 -1.89 -- 0.119 -- 9.42 -0.919 -- 31.8 1796 -- --
419.13 0.96 5.11 -2.82 1.52 -- -0.215 -- -1.09 10.9 -- -- -- --
419.32 0.959 5.11 -2.83 1.52 -- -- -- -1.09 10.9 -- -- -- --
517.95 1.06 5.08 -3.08 -- 1.09 -- -- -0.93 -- 29.6 1634 -- --
605.02 1.15 5.01 -- 1.7 1.08 -- -- -0.673 10.5 32.8 701 -- --
562.59 1.11 5.15 -2.86 -- -- -- -- -1.1 -- -- -- -- --
630.65 1.17 5.04 -- 1.54 -- -- -- -0.778 11 -- -- -- --
765.86 1.29 5.07 -- -- 0.528 -- -- -0.779 -- 29.6 1634 -- --
778.97 1.3 5.07 -- -- -- -- -- -0.786 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 347.48 wind 9.0 43200 > th dose dependent rect. 20 1
2 347.71 wind 9.0 43200 > th dose independent rect. 20 1
3 347.96 wind 9.0 43200 < th dose independent rect. 20 1
5 349.73 humidity 80.0 14400 > th dose independent rect. 17 1
6 349.89 temperature 10.0 720 > th dose dependent rect. 13 20
7 349.95 wind 9.0 43200 > th dose dependent rect. 17 14
8 350.44 temperature 30.0 720 < th dose independent rect. 16 19
9 350.46 wind 9.0 43200 > th dose dependent rect. 20 4
10 350.50 wind 9.0 43200 > th dose independent rect. 20 4
11 350.72 wind 9.0 43200 > th dose dependent rect. 20 8
12 350.76 temperature 25.0 1440 > th dose dependent rect. 14 1
14 350.80 wind 9.0 43200 > th dose dependent sin 13 NA
19 351.00 atmosphere 1000.0 43200 < th dose dependent rect. 12 1
25 351.18 wind 9.0 43200 > th dose independent rect. 20 8
27 351.33 atmosphere 1000.0 43200 < th dose dependent rect. 11 4
32 351.56 temperature 25.0 1440 > th dose dependent rect. 13 5
33 351.58 humidity 80.0 14400 < th dose independent rect. 17 1
44 351.72 atmosphere 1000.0 43200 < th dose dependent rect. 14 1
54 351.99 wind 9.0 43200 < th dose independent rect. 20 4
69 352.18 wind 9.0 43200 > th dose dependent rect. 17 7
78 352.39 wind 9.0 43200 < th dose independent rect. 20 8
92 352.68 temperature 15.0 1440 > th dose dependent rect. 14 1
99 352.83 temperature 10.0 1440 > th dose dependent rect. 13 6
107 353.03 wind 9.0 43200 > th dose independent rect. 17 15
115 353.15 precipitation 0.1 43200 > th dose dependent rect. 17 1
123 353.33 precipitation 0.1 43200 < th dose independent rect. 17 1
124 353.33 precipitation 0.1 43200 < th dose dependent rect. 17 1
136 353.40 precipitation 0.1 43200 > th dose independent rect. 17 1
182 353.87 temperature 30.0 720 < th dose independent rect. 15 13
188 353.91 temperature 25.0 1440 > th dose dependent rect. 12 13
196 354.02 wind 9.0 43200 < th dose independent rect. 18 6
197 354.02 wind 9.0 43200 < th dose independent rect. 18 10
207 354.09 temperature 30.0 720 < th dose independent rect. 15 6
213 354.11 wind 9.0 43200 > th dose independent sin 12 NA
233 354.29 temperature 30.0 720 < th dose independent rect. 9 19
260 354.56 wind 9.0 43200 > th dose independent rect. 18 11
282 354.80 atmosphere 1000.0 43200 < th dose independent rect. 11 2
325 355.02 wind 9.0 43200 < th dose independent rect. 17 15
335 355.12 humidity 80.0 14400 > th dose dependent rect. 21 1
349 355.19 temperature 10.0 720 > th dose dependent rect. 4 20
359 355.26 atmosphere 1000.0 43200 < th dose dependent sin 23 NA
364 355.29 temperature 30.0 720 < th dose independent rect. 17 2
374 355.37 temperature 30.0 720 < th dose independent rect. 9 12
382 355.42 temperature 30.0 720 < th dose independent rect. 9 10
389 355.47 atmosphere 1000.0 43200 > th dose independent rect. 11 1
456 355.86 wind 9.0 43200 < th dose independent sin 12 NA
474 355.99 radiation 1.0 43200 < th dose dependent rect. 1 1
482 356.09 temperature 30.0 720 < th dose independent rect. 7 14
496 356.16 temperature 10.0 720 > th dose dependent rect. 6 18
504 356.24 temperature 25.0 1440 > th dose dependent sin 17 NA
529 356.41 temperature 10.0 720 > th dose dependent rect. 17 16
559 356.58 wind 9.0 43200 > th dose dependent rect. 17 4
574 356.68 atmosphere 995.0 43200 < th dose independent rect. 4 12
577 356.69 atmosphere 995.0 43200 > th dose independent rect. 4 12
581 356.70 temperature 30.0 1440 < th dose dependent rect. 18 1
616 356.88 humidity 70.0 14400 > th dose dependent rect. 18 1
644 356.99 humidity 90.0 14400 < th dose independent rect. 21 1
648 357.00 temperature 10.0 1440 > th dose dependent sin 19 NA
673 357.18 temperature 30.0 720 < th dose independent sin 11 NA
679 357.19 temperature 10.0 720 > th dose dependent sin 13 NA
683 357.20 temperature 30.0 720 < th dose independent rect. 1 18
703 357.28 temperature 30.0 720 < th dose independent rect. 1 20
725 357.41 humidity 80.0 43200 > th dose independent rect. 23 1
726 357.41 atmosphere 995.0 43200 < th dose independent rect. 14 1
771 357.64 temperature 30.0 720 < th dose independent sin 17 NA
797 357.75 radiation 1.0 43200 < th dose dependent rect. 20 8
842 357.92 atmosphere 995.0 43200 > th dose independent sin 1 NA
865 358.01 radiation 1.0 43200 < th dose dependent rect. 20 6
894 358.14 radiation 30.0 1440 < th dose independent rect. 2 6
910 358.22 atmosphere 1000.0 43200 > th dose independent rect. 14 1
922 358.27 atmosphere 995.0 43200 > th dose independent rect. 7 17
931 358.31 atmosphere 995.0 43200 > th dose independent rect. 5 18
980 358.46 wind 5.0 43200 > th dose dependent rect. 15 19