BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0531100 Os05g0531100|AK109325
(142 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G21970.1 | chr4:11653633-11654106 FORWARD LENGTH=158 66 6e-12
AT1G29640.1 | chr1:10355959-10356381 REVERSE LENGTH=141 66 6e-12
AT4G04630.1 | chr4:2332163-2332669 REVERSE LENGTH=169 65 2e-11
AT2G34340.1 | chr2:14489032-14489442 REVERSE LENGTH=137 64 3e-11
AT3G15040.1 | chr3:5065445-5066176 REVERSE LENGTH=244 55 1e-08
AT4G18980.1 | chr4:10398973-10399293 FORWARD LENGTH=107 53 6e-08
AT3G45210.1 | chr3:16557482-16557928 REVERSE LENGTH=149 49 7e-07
AT5G45630.1 | chr5:18505915-18506259 REVERSE LENGTH=115 49 1e-06
AT2G28400.1 | chr2:12148513-12149001 REVERSE LENGTH=163 47 3e-06
>AT4G21970.1 | chr4:11653633-11654106 FORWARD LENGTH=158
Length = 157
Score = 66.2 bits (160), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 48/95 (50%), Gaps = 9/95 (9%)
Query: 47 SAPVEIXXXXXXXXXXXXXXEYNMFDQTNDDDDAVKKKMMNNGVMVAPPHAIVDRRRLRG 106
SAP+ I ++ DDDD G MV PPH +V +R R
Sbjct: 60 SAPMNIPDWSKVYGYSKKNTSSHLHSWAIDDDD--------EGSMV-PPHELVAKRLART 110
Query: 107 RTAAYSMCAGKGRTLKGRDLRNVRNLVLQMTGFIE 141
+ +++SMC G GRTLKGRDL RN VL TGF+E
Sbjct: 111 QISSFSMCEGIGRTLKGRDLSKTRNAVLTRTGFLE 145
>AT1G29640.1 | chr1:10355959-10356381 REVERSE LENGTH=141
Length = 140
Score = 66.2 bits (160), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 48/74 (64%), Gaps = 10/74 (13%)
Query: 68 YNMFDQTNDDDDAVKKKMMNNGVMVAPPHAIVDRRRLRGRTAAYSMCAGKGRTLKGRDLR 127
Y+ ++ +DDD +KM+ PPH IV RR + G A+S+C G GRTLKGRDL
Sbjct: 76 YSTEEEYSDDDGG--RKMI-------PPHLIVGRR-MEGGQMAFSVCTGNGRTLKGRDLS 125
Query: 128 NVRNLVLQMTGFIE 141
VRN VL++TGF+E
Sbjct: 126 RVRNSVLKLTGFLE 139
>AT4G04630.1 | chr4:2332163-2332669 REVERSE LENGTH=169
Length = 168
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/53 (58%), Positives = 37/53 (69%), Gaps = 1/53 (1%)
Query: 89 GVMVAPPHAIVDRRRLRGRTAAYSMCAGKGRTLKGRDLRNVRNLVLQMTGFIE 141
G MV PPH V R+ R + +++SMC G GRTLKGRDL VRN VL TGF+E
Sbjct: 117 GCMV-PPHEWVARKLARTQISSFSMCEGVGRTLKGRDLSKVRNAVLSKTGFLE 168
>AT2G34340.1 | chr2:14489032-14489442 REVERSE LENGTH=137
Length = 136
Score = 63.9 bits (154), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 28/48 (58%), Positives = 38/48 (79%), Gaps = 1/48 (2%)
Query: 94 PPHAIVDRRRLRGRTAAYSMCAGKGRTLKGRDLRNVRNLVLQMTGFIE 141
PPH ++ RR ++G A+S+C+G GRTLKGRDL VRN VL++TGF+E
Sbjct: 89 PPHIMIGRR-IQGGQMAFSVCSGSGRTLKGRDLSRVRNSVLRLTGFLE 135
>AT3G15040.1 | chr3:5065445-5066176 REVERSE LENGTH=244
Length = 243
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 31/48 (64%)
Query: 94 PPHAIVDRRRLRGRTAAYSMCAGKGRTLKGRDLRNVRNLVLQMTGFIE 141
PPH IV R + + S+ G GRTLKGRDLR VRN V + TGFI+
Sbjct: 196 PPHEIVARSLAQSSLLSCSVLEGAGRTLKGRDLRQVRNAVFRRTGFID 243
>AT4G18980.1 | chr4:10398973-10399293 FORWARD LENGTH=107
Length = 106
Score = 52.8 bits (125), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 33/50 (66%), Gaps = 6/50 (12%)
Query: 92 VAPPHAIVDRRRLRGRTAAYSMCAGKGRTLKGRDLRNVRNLVLQMTGFIE 141
+ PPH I+++RR + A+S C TLKGRDL RN VL+MTGF+E
Sbjct: 62 MTPPHVIIEKRRTEAQ-MAFSFC-----TLKGRDLSRHRNTVLRMTGFLE 105
>AT3G45210.1 | chr3:16557482-16557928 REVERSE LENGTH=149
Length = 148
Score = 49.3 bits (116), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 12/66 (18%)
Query: 76 DDDDAVKKKMMNNGVMVAPPHAIVDRRRLRGRTAAYSMCAGKGRTLKGRDLRNVRNLVLQ 135
+DDD + K+ PPH + + R+ A++S+ G GRTLKGRD+ VRN +L+
Sbjct: 95 NDDDGGEGKL--------PPHEYLAKTRM----ASFSVHEGIGRTLKGRDMSRVRNAILE 142
Query: 136 MTGFIE 141
TGF++
Sbjct: 143 KTGFLD 148
>AT5G45630.1 | chr5:18505915-18506259 REVERSE LENGTH=115
Length = 114
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 59/140 (42%), Gaps = 29/140 (20%)
Query: 2 EEFQEADILWPEPAEDNSDDGXXXXXXXXXXXXXXXXGSPESSSLSAPVEIXXXXXXXXX 61
EEFQE+DI++ + ++ S E++ ++PV I
Sbjct: 3 EEFQESDIIFSDQSKI-STSSRYTKLYNSRNDEKKGTRRHETAEKTSPVRIPTNNFRCLE 61
Query: 62 XXXXXEYNMFDQTNDDDDAVKKKMMNNGVMVAPPHAIVDRRRLRGRTAAYSMCAGKGRTL 121
+D T ++DD PPH I++RR A+S C TL
Sbjct: 62 ---------WDTTEEEDDKT------------PPHVIIERRM--KEQIAFSAC-----TL 93
Query: 122 KGRDLRNVRNLVLQMTGFIE 141
KGRDL RN VL+MTGF+E
Sbjct: 94 KGRDLSRHRNSVLRMTGFLE 113
>AT2G28400.1 | chr2:12148513-12149001 REVERSE LENGTH=163
Length = 162
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Query: 85 MMNNGVMVAPPHAIVDRRRLRGRTAAYSMCAGKGRTLKGRDLRNVRNLVLQMTGF 139
+ G PPH ++ RR+ A++S+ G GRTLKGRDL VRN + ++ G
Sbjct: 110 LCGEGTRRVPPHELLANRRM----ASFSVHEGAGRTLKGRDLSRVRNTIFKIRGI 160
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.132 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,565,640
Number of extensions: 79878
Number of successful extensions: 113
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 12
Length of query: 142
Length of database: 11,106,569
Length adjustment: 89
Effective length of query: 53
Effective length of database: 8,666,545
Effective search space: 459326885
Effective search space used: 459326885
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 106 (45.4 bits)