BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0746400 Os01g0746400|Os01g0746400
(569 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0746400 Carotenoid oxygenase family protein 1102 0.0
Os01g0566500 Similar to Dioxygenase RAMOSUS1 698 0.0
Os07g0154100 Similar to Viviparous-14 118 1e-26
Os03g0645900 Carotenoid oxygenase family protein 105 1e-22
Os12g0617400 Similar to Neoxanthin cleavage enzyme 98 1e-20
>Os01g0746400 Carotenoid oxygenase family protein
Length = 569
Score = 1102 bits (2851), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 538/569 (94%), Positives = 538/569 (94%)
Query: 1 MSPAMLQASSLCVSAALSGAASRPGRLASQGHQGKRAVAQPLAASAVTEXXXXXXXXXXX 60
MSPAMLQASSLCVSAALSGAASRPGRLASQGHQGKRAVAQPLAASAVTE
Sbjct: 1 MSPAMLQASSLCVSAALSGAASRPGRLASQGHQGKRAVAQPLAASAVTEAAPPAPVVAPP 60
Query: 61 XXXXXXXXXXXXXXXXXXXXELVAWKSVRQERWEGALEVDGELPLWLDGTYLRNGPGLWN 120
ELVAWKSVRQERWEGALEVDGELPLWLDGTYLRNGPGLWN
Sbjct: 61 ARPVDAPRRRGGRGGGGGGGELVAWKSVRQERWEGALEVDGELPLWLDGTYLRNGPGLWN 120
Query: 121 LGDYGFRHLFDGYATLVRVSFRGGRAVGAHRQIESEAYKAARAHGKVCYREFSEVPKPDN 180
LGDYGFRHLFDGYATLVRVSFRGGRAVGAHRQIESEAYKAARAHGKVCYREFSEVPKPDN
Sbjct: 121 LGDYGFRHLFDGYATLVRVSFRGGRAVGAHRQIESEAYKAARAHGKVCYREFSEVPKPDN 180
Query: 181 FLSYVGQLATLFSGSSLTDNSNTGVVMLGDGRVLCLTETIKGSIQVDPDTLDTVGKFQYT 240
FLSYVGQLATLFSGSSLTDNSNTGVVMLGDGRVLCLTETIKGSIQVDPDTLDTVGKFQYT
Sbjct: 181 FLSYVGQLATLFSGSSLTDNSNTGVVMLGDGRVLCLTETIKGSIQVDPDTLDTVGKFQYT 240
Query: 241 DKLGGLIHSAHPIVTDTEFWTLIPDLIRPGYVVARMDAGSNERQFVGRVDCRGGPAPGWV 300
DKLGGLIHSAHPIVTDTEFWTLIPDLIRPGYVVARMDAGSNERQFVGRVDCRGGPAPGWV
Sbjct: 241 DKLGGLIHSAHPIVTDTEFWTLIPDLIRPGYVVARMDAGSNERQFVGRVDCRGGPAPGWV 300
Query: 301 HSFPVTEHYVVVPEMPLRYCAKNLLRAEPTPLYKFEWHLESGSYMHVMCKASGKIVASVE 360
HSFPVTEHYVVVPEMPLRYCAKNLLRAEPTPLYKFEWHLESGSYMHVMCKASGKIVASVE
Sbjct: 301 HSFPVTEHYVVVPEMPLRYCAKNLLRAEPTPLYKFEWHLESGSYMHVMCKASGKIVASVE 360
Query: 361 VPPFVTFHFINAYEETDEEGRVTAIIADCCEHNANTAILDKLRLHNLRSSSGQDVLPDAR 420
VPPFVTFHFINAYEETDEEGRVTAIIADCCEHNANTAILDKLRLHNLRSSSGQDVLPDAR
Sbjct: 361 VPPFVTFHFINAYEETDEEGRVTAIIADCCEHNANTAILDKLRLHNLRSSSGQDVLPDAR 420
Query: 421 VGRFRIPLDGSQFGELETALDPEEHGRGMDMCSINPAHVGREYRYAYACGARRPCNFPNT 480
VGRFRIPLDGSQFGELETALDPEEHGRGMDMCSINPAHVGREYRYAYACGARRPCNFPNT
Sbjct: 421 VGRFRIPLDGSQFGELETALDPEEHGRGMDMCSINPAHVGREYRYAYACGARRPCNFPNT 480
Query: 481 LTKVDLVERTAKNWHEEGSVPSEPFFVPRPGATEEDDGVAISMVSAKDGSGYALVLDGKT 540
LTKVDLVERTAKNWHEEGSVPSEPFFVPRPGATEEDDGVAISMVSAKDGSGYALVLDGKT
Sbjct: 481 LTKVDLVERTAKNWHEEGSVPSEPFFVPRPGATEEDDGVAISMVSAKDGSGYALVLDGKT 540
Query: 541 FEEVARAKFPYGLPYGLHCCWVPRKRNSK 569
FEEVARAKFPYGLPYGLHCCWVPRKRNSK
Sbjct: 541 FEEVARAKFPYGLPYGLHCCWVPRKRNSK 569
>Os01g0566500 Similar to Dioxygenase RAMOSUS1
Length = 552
Score = 698 bits (1801), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/487 (68%), Positives = 398/487 (81%), Gaps = 7/487 (1%)
Query: 81 ELVAWKSVRQERWEGALEVDGELPLWLDGTYLRNGPGLWNLGDYGFRHLFDGYATLVRVS 140
+L A SVRQERWEG L ++G LP WL+GTY+RNGPG+W++G++ F HLFDGYATLVRVS
Sbjct: 65 KLSASTSVRQERWEGDLPIEGCLPPWLNGTYIRNGPGMWDVGEHAFHHLFDGYATLVRVS 124
Query: 141 FRGGRAVGA---HRQIESEAYKAARAHGKVCYREFSEVPKP-DNFLSYVGQLATLFSGSS 196
FRGG A HRQIESEAY+AA A G+ REFS P P + L G L L +G++
Sbjct: 125 FRGGGGARATGAHRQIESEAYRAAVARGRPVLREFSHCPAPAKSLLHRFGDLVGLVTGAA 184
Query: 197 LTDNSNTGVVMLGDGRVLCLTETIKGSIQVDPDTLDTVGKFQYTDKLGGLIHSAHPIVTD 256
LTDN N+ V+ LGDGRV+CLTET K S+ +DPDTL+TVG+F+YTD+LGG++ SAHPIVTD
Sbjct: 185 LTDNPNSAVLPLGDGRVMCLTETTKSSVLIDPDTLETVGRFRYTDRLGGMVQSAHPIVTD 244
Query: 257 TEFWTLIPDLIRPGYVVARMDAGSNERQFVGRVDCRGGPAPGWVHSFPVTEHYVVVPEMP 316
TEF TL+PDL+RPG++V RM+AGSNER+ +GR+DCRGGP+PGW+HSF VTE Y VVPEMP
Sbjct: 245 TEFLTLLPDLVRPGHLVVRMEAGSNERKVIGRMDCRGGPSPGWLHSFAVTEKYAVVPEMP 304
Query: 317 LRYCAKNLLRAEPTPLYKFEWHLESGSYMHVMCKASGKIVASVEVPPFVTFHFINAYEET 376
LRY + +LL +E P Y F+W SGSYMHVMCK++GK VASVEVPPF+ HFINAYEE
Sbjct: 305 LRYSSASLLASELAPFYAFDWVPASGSYMHVMCKSTGKTVASVEVPPFMAIHFINAYEE- 363
Query: 377 DEEGRVTAIIADCCEHNANTAILDKLRLHNLRSSSGQDVLPDARVGRFRIPLDGSQFGEL 436
EG A++ DCCEH + AI++ L L LR G+DVLP+ARVGRFRIPLDGS FGEL
Sbjct: 364 --EGDEAAVVVDCCEHYGDPAIIETLVLSRLRLLRGKDVLPNARVGRFRIPLDGSPFGEL 421
Query: 437 ETALDPEEHGRGMDMCSINPAHVGREYRYAYACGARRPCNFPNTLTKVDLVERTAKNWHE 496
ETALDPEEHGRGMDMCSINPA +GR+Y+YAYACGARRPCNFPNTLTK+DLVE+ AK+WHE
Sbjct: 422 ETALDPEEHGRGMDMCSINPARLGRKYQYAYACGARRPCNFPNTLTKIDLVEKKAKSWHE 481
Query: 497 EGSVPSEPFFVPRPGATEEDDGVAISMVSAKDGSGYALVLDGKTFEEVARAKFPYGLPYG 556
EGSVPSEPFFV RPGAT+EDDGV IS+VS+ DG GYALVLD TFEE+AR +FPYGLPYG
Sbjct: 482 EGSVPSEPFFVARPGATDEDDGVVISIVSSDDGEGYALVLDATTFEEIARVRFPYGLPYG 541
Query: 557 LHCCWVP 563
H CW+P
Sbjct: 542 FHGCWIP 548
>Os07g0154100 Similar to Viviparous-14
Length = 582
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 150/505 (29%), Positives = 217/505 (42%), Gaps = 82/505 (16%)
Query: 97 LEVDGELPLWLDGTYLRNGPGLWNLGDYGFRHLFDGYATLVRVSFRGGRAVG-AHRQIES 155
L V G LP LDG Y+RNG + G HLFDG L V GGRA A R E+
Sbjct: 112 LPVSGRLPACLDGVYVRNGANPLHAPRAG-HHLFDGDGMLHAVRLAGGRAESYACRFTET 170
Query: 156 EAYKAARAHGKVCYREFSEVPKPDNFL-SYVGQLATLFSGSS-----LTDNSNTGVVMLG 209
+ R G+ + PK L + G L GS L + GV G
Sbjct: 171 ARLRQEREMGRPVF------PKAIGELHGHSGVARLLLFGSRALCGVLDASRGIGVANAG 224
Query: 210 ----DGRVLCLTET-IKGSIQVDPD-TLDTVGKFQYTDKL---GGLIHSAHPIVTDT--E 258
DGR+L ++E + ++V D L+TVG++ + +L G +I AHP + E
Sbjct: 225 LVYHDGRLLAMSEDDLPYHVRVTHDGDLETVGRYDFHGQLDADGTMI--AHPKLDPVTGE 282
Query: 259 FWTLIPDLIRPGYVVARMDAGSNERQFVGRVDCRGGPAPGWVHSFPVTEHYVVVPEMPLR 318
+ L +++ Y+ + VD G AP +H F VTE+Y VVP+ +
Sbjct: 283 LFALSYNVVSKPYLKYFYFTADGRKSR--DVDIPVG-APTMIHDFAVTENYAVVPDQQIV 339
Query: 319 YCAKNLLRAEPTPLYKFEWHLESGSYMHVMCK--ASGKIVASVEVPPFVTFHFINAYEET 376
+ + ++R +Y E S V+ K A + VEVP FH NA+E+
Sbjct: 340 FKLQEMVRGGSPVVYD----REKASRFGVLPKRAADASELRWVEVPGCFCFHLWNAWED- 394
Query: 377 DEEGRVTAIIADCC--------------EHNANTAILDKLRLHNLRSSSGQDVLPDARVG 422
D G + +I C E + ++L ++RL P V
Sbjct: 395 DATGEIV-VIGSCMTPPDAVFNEPSQSPEEESFRSVLSEIRLD-----------PRTGVS 442
Query: 423 RFRIPL-DGSQFGELETALDPEEHGRGMDMCSINPAHVGREYRYAYACGARRPCNFPNTL 481
R R L D ++ LE + +N +GR+ RYAY A P +
Sbjct: 443 RRRDVLRDAAEQVNLEAGM-------------VNRQLLGRKTRYAYLAIAE-PWPRVSGF 488
Query: 482 TKVDLVERTAKNW-HEEGSVPSEPFFVPRPGATEEDDGVAISMVSAKD-GSGYALVLDG- 538
KVDL TA+ + + EG EP FVPR GA EDDG + V ++ G+ +V+D
Sbjct: 489 AKVDLESGTAEKFIYGEGRYGGEPCFVPRAGAAAEDDGHVLCFVHDEERGTSELVVVDAG 548
Query: 539 -KTFEEVARAKFPYGLPYGLHCCWV 562
+ EEVA K P +PYGLH ++
Sbjct: 549 SEAMEEVAAVKLPGRVPYGLHGTFI 573
>Os03g0645900 Carotenoid oxygenase family protein
Length = 608
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 136/492 (27%), Positives = 213/492 (43%), Gaps = 60/492 (12%)
Query: 96 ALEVDGELPLWLDGTYLRNGPGLWNLGDYGFRHLFDGYATLVRVSFRGGRAVG-AHRQIE 154
AL V G +P +++G Y RNG + HLFDG + V R G A A R E
Sbjct: 143 ALPVSGRIPPFINGVYARNGAN-PHFDPVAGHHLFDGDGMVHAVRIRNGAAESYACRFTE 201
Query: 155 SEAYKAARAHGKVCYREFSEVPKPDNFL---SYVGQLATLFSGSS--LTDNSN-TGVVML 208
+ + RA G+ + PK L S + +LA ++ ++ L D S+ TGV
Sbjct: 202 TARLRQERAMGRPMF------PKAIGELHGHSGIARLALFYARAACGLLDPSHGTGVANA 255
Query: 209 G----DGRVLCLTET-IKGSIQVDPD-TLDTVGKFQYTDKLGGLIHSAHPIVTDT--EFW 260
G +GR+L ++E + ++V D L+TVG++ + +LG + AHP + E
Sbjct: 256 GLIYFNGRLLAMSEDDLPYQVRVTADGDLETVGRYDFDGQLGCAM-IAHPKLDPATGELH 314
Query: 261 TLIPDLIRPGYVVARMDAGSNERQFVGRVDCRGGPAPGWVHSFPVTEHYVVVPEMPLRYC 320
L D+I+ Y+ A + + P +H F +TE+YVVVP+ + +
Sbjct: 315 ALSYDVIKKPYLKYFYFAPDGTKSADVEIPLD---QPTMIHDFAITENYVVVPDHQVVFK 371
Query: 321 AKNLLR-AEPTPLYKFEWHLESGSYMHVMCK--ASGKIVASVEVPPFVTFHFINAYEETD 377
+ +LR P L K E S V+ K A + V+VP FH NA+EE D
Sbjct: 372 LQEMLRGGSPVVLDK-----EKTSRFGVLPKHAADASEMVWVDVPDCFCFHLWNAWEEAD 426
Query: 378 EEGRVTAIIADCCEHNANTAILDKLRLHNLRSSSGQDVLPDARVGRFRIPLDGSQFGE-L 436
+ ++ C A++ + N + VL + R+ ++ GE
Sbjct: 427 TD---EVVVIGSCMTPADS-------IFNESDDRLESVLTEIRL--------NTRTGEST 468
Query: 437 ETALDPEEHGRGMDMCSINPAHVGREYRYAYACGARRPCNFPNTLTKVDLVE-RTAKNWH 495
A+ P +++ +N +GR+ RYAY A P + KVDL K +
Sbjct: 469 RRAILPPSSQVNLEVGMVNRNLLGRKTRYAYLAVA-EPWPKVSGFAKVDLATGELTKFEY 527
Query: 496 EEGSVPSEPFFVPRPGATE----EDDGVAISMV-SAKDGSGYALVLDGKTFEEVARAKFP 550
EG EP FVP A EDDG +S V + G+ LV++ A + P
Sbjct: 528 GEGRFGGEPCFVPMDAAAATPRGEDDGYILSFVHDERAGTSELLVVNAADMRLEATVQLP 587
Query: 551 YGLPYGLHCCWV 562
+PYG H ++
Sbjct: 588 SRVPYGFHGTFI 599
>Os12g0617400 Similar to Neoxanthin cleavage enzyme
Length = 613
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 136/497 (27%), Positives = 209/497 (42%), Gaps = 67/497 (13%)
Query: 96 ALEVDGELPLWLDGTYLRNGPGLWNLGDYGFRHLFDGYATLVRVSFRGGRAVG-AHRQIE 154
+L V G +P +++G Y RNG G HLFDG + V R G A A R E
Sbjct: 145 SLPVSGRIPPFINGVYARNGANPHFEPTAG-HHLFDGDGMVHAVRIRNGAAESYACRFTE 203
Query: 155 SEAYKAARAHGKVCY-REFSEVPKPDNF----LSYVGQLATLFSGSSLTDNSNTGVVMLG 209
+ RA G+ + + E+ L Y L L S T +N G+V
Sbjct: 204 TARLGQERALGRAVFPKAIGELHGHSGIARLALFYARGLCGLVDPSHGTGVANAGLVYF- 262
Query: 210 DGRVLCLTET-IKGSIQVDPD-TLDTVGKFQYTDKLGGLIHSAHPIV--TDTEFWTLIPD 265
+GR+L ++E + ++V D L+TVG++ + +LG + AHP + E + L D
Sbjct: 263 NGRLLAMSEDDLPYQVRVTADGDLETVGRYDFDGQLGCAM-IAHPKLDPVSGELFALSYD 321
Query: 266 LIRPGYVVARMDAGSNERQFVGRVDCRGGP-------APGWVHSFPVTEHYVVVPEMPLR 318
+I+ Y+ + F D P P +H F +TE++VVVP+ +
Sbjct: 322 VIKKPYL----------KYFYFDADGTKSPDVEIELEQPTMIHDFAITENFVVVPDHQVV 371
Query: 319 YCAKNLLR-AEPTPLYKFEWHLESGSYMHVMCK--ASGKIVASVEVPPFVTFHFINAYEE 375
+ + R P L + E S V+ K S + V+VP FH NA+EE
Sbjct: 372 FKLGEMFRGGSPVVLDR-----EKTSRFGVLPKHATSSLEMVWVDVPDCFCFHLWNAWEE 426
Query: 376 TDEEGRVTAIIADCCEHNANTAILDKLRLHNLRSSSGQDVLPDARVGRFRIPLDGSQFGE 435
E G V ++ C A++ + N + VL + R+ ++ GE
Sbjct: 427 A-ESGEV--VVVGSCMTPADS-------IFNESDEHLESVLTEIRL--------NTRTGE 468
Query: 436 -LETALDPEEHGRGMDMCSINPAHVGREYRYAYACGARRPCNFPNTLTKVDLVE-RTAKN 493
A+ P +++ +N A +GR+ RYAY A P + KVDL K
Sbjct: 469 STRRAVLPPAAQVNLEVGMVNRAMLGRKTRYAYLAVA-EPWPKVSGFAKVDLATGELTKF 527
Query: 494 WHEEGSVPSEPFFVPRPG-------ATEEDDGVAISMVSAK-DGSGYALVLDGKTFEEVA 545
+ EG EP FVP G A EDDG +S V + G+ LV++ A
Sbjct: 528 EYGEGRFGGEPCFVPMGGAGAAASPARGEDDGYILSFVRDEAAGTSELLVVNAADMRLEA 587
Query: 546 RAKFPYGLPYGLHCCWV 562
+ P +PYG H ++
Sbjct: 588 TVQLPSRVPYGFHGTFI 604
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.136 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 20,595,826
Number of extensions: 936861
Number of successful extensions: 1760
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 1748
Number of HSP's successfully gapped: 5
Length of query: 569
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 463
Effective length of database: 11,501,117
Effective search space: 5325017171
Effective search space used: 5325017171
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 159 (65.9 bits)