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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0746400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Carotenoid oxygenase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.91 (0.0308) R2 : 0.0216
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.206 (0.0648) R2dN8 : 0.0279 R2N8 : 0.0216
σ : 0.58
deviance : 154.45
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
147.35 0.57 2.97 -0.785 0.102 2.05 -0.313 -15.6 0.189 3.49 30.08 7 -- --
151.79 0.578 2.91 -0.276 0.084 0.218 -0.301 -- 0.181 3.91 30.08 7 -- --
147.62 0.566 2.96 -0.775 0.103 2.07 -- -15.5 0.192 2.65 30.1 6 -- --
151.81 0.574 2.91 -0.276 0.0945 0.281 -- -- 0.186 2.87 29.9 6 -- --
148.19 0.567 2.96 -0.76 -- 1.97 -- -15.3 0.192 -- 30.1 6 -- --
152.14 0.578 2.91 -0.264 0.0585 -- -0.373 -- 0.174 4.35 -- -- -- --
152.46 0.578 2.91 -0.261 0.0615 -- -- -- 0.176 2.42 -- -- -- --
152.27 0.575 2.91 -0.269 -- 0.219 -- -- 0.186 -- 30 6 -- --
153.79 0.578 2.9 -- 0.0824 0.237 -- -- 0.214 2.73 30 6 -- --
152.69 0.577 2.91 -0.258 -- -- -- -- 0.177 -- -- -- -- --
154.26 0.581 2.91 -- 0.0565 -- -- -- 0.205 2.35 -- -- -- --
154.16 0.578 2.9 -- -- 0.181 -- -- 0.214 -- 30.07 6 -- --
154.45 0.58 2.91 -- -- -- -- -- 0.206 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 135.51 atmosphere 1005.0 10 > th dose independent rect. 2 1
2 135.71 wind 3.0 10 < th dose independent rect. 2 1
3 135.97 atmosphere 1000.0 10 > th dose dependent rect. 2 1
8 136.24 wind 7.0 10 < th dose dependent rect. 2 1
10 136.26 temperature 30.0 30 < th dose dependent rect. 2 1
18 136.41 temperature 25.0 30 < th dose independent rect. 2 1
20 136.42 temperature 10.0 30 > th dose independent rect. 2 1
23 136.42 humidity 50.0 30 > th dose independent rect. 2 1
26 136.42 atmosphere 995.0 30 > th dose independent rect. 2 1
28 136.42 atmosphere 1010.0 30 < th dose independent rect. 2 1
30 136.42 radiation 1.0 30 < th dose independent rect. 2 1
35 136.42 precipitation 0.1 30 < th dose independent rect. 2 1
36 136.42 temperature 10.0 30 > th dose independent rect. 3 23
38 136.42 radiation 1.0 30 < th dose dependent rect. 2 1
43 136.42 precipitation 0.1 30 < th dose dependent rect. 2 1
47 136.47 temperature 10.0 10 > th dose dependent rect. 2 1
75 136.57 wind 1.0 30 > th dose independent rect. 2 1
76 136.58 atmosphere 1015.0 30 < th dose dependent rect. 2 1
77 136.61 humidity 50.0 30 > th dose dependent rect. 2 1
79 136.63 temperature 30.0 30 < th dose independent rect. 3 23
86 136.83 temperature 25.0 90 > th dose dependent rect. 1 3
93 137.13 temperature 25.0 90 > th dose independent rect. 1 3
97 137.31 wind 9.0 1440 < th dose independent rect. 3 1
98 137.31 temperature 10.0 1440 > th dose independent rect. 3 1
101 137.31 temperature 30.0 1440 < th dose independent rect. 3 1
105 137.31 humidity 50.0 1440 > th dose independent rect. 3 1
114 137.31 atmosphere 995.0 1440 > th dose independent rect. 3 1
115 137.31 radiation 1.0 1440 < th dose independent rect. 3 1
135 137.31 temperature 10.0 1440 > th dose independent rect. 4 23
138 137.31 atmosphere 995.0 10 > th dose independent rect. 3 23
139 137.31 radiation 1.0 1440 < th dose dependent rect. 3 1
165 137.91 wind 9.0 30 < th dose independent rect. 3 23
170 138.19 precipitation 0.1 30 < th dose independent rect. 3 23
171 138.19 precipitation 0.1 30 < th dose dependent rect. 3 23
208 141.01 temperature 25.0 270 > th dose independent rect. 22 5
218 141.32 humidity 50.0 30 > th dose independent rect. 3 23
245 142.11 radiation 10.0 90 < th dose dependent rect. 10 1
275 142.80 atmosphere 1005.0 30 > th dose independent rect. 1 5
285 142.94 wind 1.0 10 < th dose independent rect. 11 16
295 143.06 radiation 20.0 90 < th dose independent rect. 10 1
301 143.12 atmosphere 1015.0 30 < th dose independent rect. 3 23
315 143.36 radiation 40.0 30 < th dose independent rect. 11 16
332 143.59 temperature 20.0 30 > th dose dependent rect. 22 8
356 143.91 radiation 30.0 30 < th dose independent rect. 11 19
360 143.96 humidity 90.0 90 < th dose independent rect. 1 2
380 144.14 wind 1.0 10 < th dose independent rect. 7 20
385 144.18 radiation 20.0 720 < th dose dependent rect. 16 8
416 144.43 wind 5.0 30 < th dose independent rect. 3 8
429 144.47 radiation 20.0 270 < th dose independent rect. 8 19
474 144.73 wind 9.0 30 < th dose dependent rect. 3 8
501 144.78 temperature 20.0 10 > th dose independent rect. 2 4
511 144.80 radiation 40.0 90 < th dose dependent rect. 10 17
535 144.92 radiation 40.0 90 < th dose dependent rect. 10 19
536 144.93 wind 5.0 10 < th dose independent rect. 6 5
539 144.94 wind 1.0 10 > th dose independent rect. 12 23
552 144.99 temperature 15.0 30 > th dose independent rect. 11 16
556 145.02 wind 5.0 270 < th dose independent rect. 3 5
571 145.07 humidity 90.0 270 < th dose independent rect. 22 5
572 145.07 wind 9.0 10 < th dose dependent rect. 6 5
577 145.08 radiation 40.0 10 < th dose dependent rect. 12 1
578 145.08 radiation 40.0 270 < th dose dependent rect. 8 19
594 145.14 precipitation 0.1 30 < th dose independent rect. 11 16
596 145.14 precipitation 0.1 30 < th dose dependent rect. 11 16
598 145.15 precipitation 0.1 30 < th dose independent rect. 3 8
599 145.15 precipitation 0.1 30 < th dose dependent rect. 3 8
612 145.19 temperature 10.0 30 > th dose independent rect. 3 8
614 145.19 humidity 50.0 30 > th dose independent rect. 3 8
615 145.19 atmosphere 995.0 30 > th dose independent rect. 3 8
616 145.19 atmosphere 1015.0 30 < th dose independent rect. 3 8
617 145.19 wind 1.0 10 > th dose independent rect. 23 12
630 145.23 temperature 25.0 270 < th dose independent rect. 19 13
634 145.24 temperature 15.0 270 > th dose dependent rect. 6 1
645 145.26 atmosphere 995.0 30 > th dose dependent rect. 3 8
657 145.31 atmosphere 995.0 10 > th dose dependent rect. 6 5
659 145.32 wind 1.0 10 > th dose independent sin 16 NA
660 145.32 atmosphere 995.0 30 > th dose independent rect. 11 16
664 145.33 wind 1.0 10 > th dose independent rect. 18 17
672 145.35 atmosphere 995.0 30 > th dose dependent rect. 11 19
690 145.39 temperature 10.0 1440 > th dose independent rect. 4 8
693 145.39 atmosphere 995.0 1440 > th dose independent rect. 4 8
694 145.39 temperature 10.0 1440 > th dose independent rect. 12 16
724 145.40 temperature 10.0 30 > th dose dependent rect. 3 8
725 145.41 wind 3.0 270 < th dose independent rect. 5 2
727 145.41 temperature 10.0 10 > th dose dependent rect. 6 5
746 145.46 temperature 30.0 30 < th dose independent rect. 3 8
747 145.46 wind 9.0 30 < th dose independent rect. 11 16
763 145.52 wind 1.0 10 > th dose independent rect. 23 23
765 145.52 atmosphere 995.0 270 > th dose dependent rect. 5 2
781 145.57 wind 7.0 270 < th dose dependent rect. 5 2
784 145.58 temperature 25.0 720 > th dose independent rect. 15 12
815 145.63 radiation 1.0 720 < th dose independent rect. 17 7
822 145.65 precipitation 0.1 1440 > th dose independent rect. 12 1
825 145.65 precipitation 0.1 1440 > th dose dependent rect. 12 1
847 145.70 temperature 10.0 10 > th dose independent rect. 6 5
849 145.70 humidity 50.0 10 > th dose independent rect. 6 5
850 145.70 atmosphere 995.0 10 > th dose independent rect. 6 5
851 145.70 atmosphere 1015.0 10 < th dose independent rect. 6 5
852 145.70 precipitation 0.1 10 < th dose independent rect. 6 5
855 145.70 temperature 10.0 10 > th dose independent rect. 11 19
856 145.70 precipitation 0.1 30 < th dose independent rect. 11 19
858 145.70 precipitation 0.1 10 < th dose dependent rect. 6 5
862 145.70 precipitation 0.1 30 < th dose dependent rect. 11 19
879 145.72 atmosphere 1000.0 10 > th dose independent rect. 11 19
886 145.74 temperature 10.0 1440 > th dose independent rect. 7 5
890 145.74 atmosphere 995.0 1440 > th dose independent rect. 7 5
891 145.74 radiation 1.0 30 > th dose independent rect. 6 5
892 145.74 temperature 10.0 1440 > th dose independent rect. 12 19
901 145.75 humidity 50.0 10 > th dose independent rect. 11 19
908 145.76 temperature 30.0 4320 < th dose independent rect. 13 1
928 145.80 temperature 30.0 10 < th dose independent rect. 6 5
932 145.80 atmosphere 995.0 270 > th dose dependent rect. 3 5
936 145.82 wind 1.0 10 > th dose independent rect. 6 5
940 145.83 wind 9.0 720 < th dose independent rect. 3 8
949 145.84 humidity 50.0 30 > th dose independent rect. 11 16
951 145.85 wind 1.0 1440 < th dose independent rect. 17 1
955 145.85 wind 1.0 1440 < th dose dependent rect. 17 1
964 145.87 precipitation 0.1 270 < th dose independent rect. 3 5
969 145.87 precipitation 0.1 270 < th dose dependent rect. 3 5
972 145.88 wind 9.0 270 < th dose dependent rect. 3 5
976 145.90 precipitation 0.1 270 < th dose independent rect. 5 2
980 145.90 precipitation 0.1 270 < th dose dependent rect. 5 2
981 145.91 humidity 70.0 270 > th dose independent rect. 5 2
982 145.91 radiation 20.0 270 < th dose independent rect. 5 2
991 145.93 temperature 10.0 270 > th dose independent rect. 5 2
993 145.93 temperature 30.0 270 < th dose independent rect. 5 2
994 145.93 humidity 50.0 270 > th dose independent rect. 5 2
996 145.93 atmosphere 995.0 270 > th dose independent rect. 5 2
997 145.93 atmosphere 1015.0 270 < th dose independent rect. 5 2