Os12g0617400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Neoxanthin cleavage enzyme.
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Os12g0617400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Neoxanthin cleavage enzyme.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 316.36 | 0.836 | 9.45 | 0.366 | 3.47 | -2.46 | -1.5 | -0.244 | 0.0435 | 10.8 | 77.61 | 34 | 19 | -- |
| 316.18 | 0.828 | 9.45 | 0.361 | 3.49 | -2.47 | -1.54 | -- | 0.0443 | 10.7 | 77.36 | 40 | 19.1 | -- |
| 324.83 | 0.839 | 9.45 | 0.303 | 3.5 | -2.47 | -- | -0.737 | 0.0526 | 10.7 | 77.44 | 40 | 19.1 | -- |
| 325.94 | 0.841 | 9.45 | 0.304 | 3.48 | -2.46 | -- | -- | 0.0413 | 10.7 | 77.61 | 40 | 19.2 | -- |
| 426.93 | 0.962 | 9.52 | 0.18 | -- | -3.46 | -- | 1.38 | 0.088 | -- | -7.188 | 53 | 6.96 | -- |
| 435.72 | 0.979 | 9.43 | 0.381 | 3.22 | -- | -1.19 | -- | 0.208 | 11.8 | -- | -- | -- | -- |
| 441.9 | 0.984 | 9.44 | 0.334 | 3.22 | -- | -- | -- | 0.203 | 11.8 | -- | -- | -- | -- |
| 434.27 | 0.971 | 9.51 | 0.345 | -- | -3.43 | -- | -- | 0.167 | -- | -5.622 | 29 | 6.82 | -- |
| 328.42 | 0.844 | 9.46 | -- | 3.49 | -2.45 | -- | -- | 0.0113 | 10.7 | 77.34 | 40 | 19.2 | -- |
| 1095.82 | 1.55 | 9.51 | 0.239 | -- | -- | -- | -- | 0.163 | -- | -- | -- | -- | -- |
| 444.83 | 0.987 | 9.45 | -- | 3.22 | -- | -- | -- | 0.166 | 11.8 | -- | -- | -- | -- |
| 436.71 | 0.973 | 9.52 | -- | -- | -3.4 | -- | -- | 0.148 | -- | -27.93 | 56 | 6.98 | -- |
| 1097.33 | 1.55 | 9.52 | -- | -- | -- | -- | -- | 0.136 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 313.56 | humidity | 70 | 30 | > th | dose dependent | rect. | 3 | 19 |
| 5 | 317.36 | humidity | 80 | 30 | > th | dose dependent | sin | 1 | NA |
| 22 | 320.83 | humidity | 70 | 90 | > th | dose dependent | rect. | 24 | 23 |
| 25 | 321.08 | humidity | 70 | 90 | > th | dose dependent | rect. | 1 | 21 |
| 100 | 328.90 | humidity | 70 | 90 | > th | dose dependent | rect. | 3 | 12 |
| 122 | 330.80 | humidity | 80 | 90 | > th | dose dependent | rect. | 3 | 14 |
| 237 | 336.82 | humidity | 90 | 90 | < th | dose independent | rect. | 22 | 19 |
| 257 | 337.51 | humidity | 80 | 10 | > th | dose independent | rect. | 3 | 19 |
| 266 | 338.01 | humidity | 70 | 30 | > th | dose dependent | rect. | 16 | 23 |
| 277 | 338.36 | humidity | 70 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 283 | 338.47 | radiation | 10 | 90 | < th | dose dependent | rect. | 3 | 19 |
| 286 | 338.55 | humidity | 70 | 30 | > th | dose dependent | no | NA | NA |
| 289 | 338.66 | humidity | 70 | 30 | > th | dose dependent | rect. | 11 | 23 |
| 296 | 338.94 | humidity | 80 | 90 | > th | dose dependent | rect. | 1 | 14 |
| 297 | 338.97 | humidity | 90 | 270 | < th | dose independent | rect. | 19 | 21 |
| 303 | 339.26 | humidity | 80 | 30 | > th | dose independent | rect. | 3 | 17 |
| 311 | 339.53 | humidity | 70 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 383 | 341.36 | radiation | 10 | 90 | < th | dose dependent | sin | 0 | NA |
| 433 | 342.52 | humidity | 80 | 10 | > th | dose independent | sin | 1 | NA |
| 442 | 342.74 | humidity | 70 | 30 | > th | dose dependent | rect. | 9 | 23 |
| 464 | 343.42 | temperature | 20 | 270 | > th | dose independent | rect. | 15 | 15 |
| 480 | 343.75 | radiation | 10 | 270 | < th | dose dependent | rect. | 1 | 18 |
| 543 | 345.18 | radiation | 1 | 270 | > th | dose independent | rect. | 18 | 22 |
| 556 | 345.38 | radiation | 10 | 90 | < th | dose independent | rect. | 3 | 19 |
| 575 | 345.63 | humidity | 80 | 30 | > th | dose independent | rect. | 3 | 12 |
| 598 | 346.17 | radiation | 1 | 270 | > th | dose independent | rect. | 4 | 12 |
| 617 | 346.41 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 6 |
| 641 | 346.89 | radiation | 1 | 270 | < th | dose independent | rect. | 1 | 19 |
| 697 | 347.98 | radiation | 1 | 90 | < th | dose independent | sin | 0 | NA |
| 723 | 348.43 | radiation | 1 | 90 | > th | dose independent | sin | 0 | NA |
| 726 | 348.44 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 4 |
| 728 | 348.46 | humidity | 70 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 768 | 348.94 | humidity | 90 | 90 | < th | dose independent | sin | 2 | NA |
| 875 | 350.37 | radiation | 1 | 270 | < th | dose independent | sin | 2 | NA |
| 911 | 350.68 | radiation | 20 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 915 | 350.78 | humidity | 90 | 10 | < th | dose dependent | rect. | 22 | 20 |
| 950 | 351.27 | radiation | 20 | 90 | < th | dose dependent | rect. | 13 | 22 |
| 971 | 351.54 | temperature | 30 | 10 | < th | dose dependent | rect. | 22 | 6 |
| 979 | 351.63 | humidity | 80 | 30 | < th | dose independent | rect. | 6 | 12 |