Os03g0645900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Carotenoid oxygenase family protein.
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Os03g0645900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Carotenoid oxygenase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 159.83 | 0.594 | 9.73 | 0.628 | 0.16 | -1.02 | -0.192 | -0.897 | 0.221 | 0.754 | 21.3 | 809 | -- | -- |
| 161.92 | 0.593 | 9.7 | 0.84 | 0.145 | -0.98 | -0.496 | -- | 0.281 | 23.8 | 21.4 | 801 | -- | -- |
| 159.96 | 0.589 | 9.73 | 0.617 | 0.162 | -1.01 | -- | -0.956 | 0.216 | 1.23 | 21.3 | 808 | -- | -- |
| 162.72 | 0.594 | 9.7 | 0.852 | 0.163 | -0.966 | -- | -- | 0.27 | 1.32 | 21.3 | 808 | -- | -- |
| 161.48 | 0.592 | 9.73 | 0.611 | -- | -0.967 | -- | -0.917 | 0.213 | -- | 21.3 | 745 | -- | -- |
| 192.25 | 0.65 | 9.75 | 0.496 | 0.128 | -- | 0.785 | -- | 0.00994 | 7.44 | -- | -- | -- | -- |
| 193.8 | 0.652 | 9.76 | 0.513 | 0.141 | -- | -- | -- | 0.00752 | 6.13 | -- | -- | -- | -- |
| 163.54 | 0.596 | 9.7 | 0.842 | -- | -0.946 | -- | -- | 0.272 | -- | 21.3 | 610 | -- | -- |
| 178.86 | 0.623 | 9.73 | -- | 0.173 | -0.67 | -- | -- | 0.143 | 2.43 | 22.3 | 904 | -- | -- |
| 194.83 | 0.652 | 9.76 | 0.517 | -- | -- | -- | -- | 0.0107 | -- | -- | -- | -- | -- |
| 200.73 | 0.663 | 9.77 | -- | 0.148 | -- | -- | -- | -0.0496 | 5.95 | -- | -- | -- | -- |
| 179.31 | 0.624 | 9.73 | -- | -- | -0.65 | -- | -- | 0.147 | -- | 22.26 | 553 | -- | -- |
| 201.87 | 0.663 | 9.77 | -- | -- | -- | -- | -- | -0.0467 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 159.45 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 2 | 161.38 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 3 | 161.49 | temperature | 20.0 | 720 | > th | dose independent | rect. | 19 | 12 |
| 4 | 161.60 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 6 | 161.78 | wind | 9.0 | 14400 | > th | dose independent | rect. | 5 | 8 |
| 14 | 162.57 | wind | 9.0 | 14400 | > th | dose independent | rect. | 10 | 2 |
| 16 | 162.69 | wind | 9.0 | 14400 | > th | dose independent | rect. | 9 | 4 |
| 19 | 162.73 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 20 | 162.74 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 5 | 8 |
| 22 | 162.98 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 20 | 8 |
| 26 | 163.13 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 10 | 3 |
| 30 | 163.17 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 33 | 163.26 | temperature | 20.0 | 720 | > th | dose independent | rect. | 12 | 19 |
| 42 | 163.54 | wind | 9.0 | 14400 | < th | dose independent | rect. | 10 | 3 |
| 45 | 163.54 | temperature | 20.0 | 720 | > th | dose independent | rect. | 4 | 20 |
| 46 | 163.61 | wind | 9.0 | 14400 | < th | dose independent | rect. | 6 | 7 |
| 47 | 163.62 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 48 | 163.63 | temperature | 20.0 | 720 | > th | dose independent | rect. | 19 | 21 |
| 54 | 163.74 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 55 | 163.75 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 57 | 163.75 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 60 | 163.80 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 20 | 10 |
| 67 | 163.89 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 70 | 163.94 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 20 | 8 |
| 83 | 164.08 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 17 | 14 |
| 85 | 164.10 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 23 | 2 |
| 97 | 164.28 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 17 | 12 |
| 148 | 164.64 | temperature | 20.0 | 720 | > th | dose independent | sin | 11 | NA |
| 152 | 164.65 | temperature | 25.0 | 720 | < th | dose dependent | sin | 12 | NA |
| 186 | 164.84 | wind | 9.0 | 14400 | < th | dose independent | rect. | 2 | 11 |
| 203 | 164.91 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 204 | 164.91 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 212 | 164.95 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 23 | 8 |
| 215 | 164.97 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 225 | 165.00 | temperature | 20.0 | 720 | < th | dose independent | sin | 12 | NA |
| 255 | 165.12 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 23 | 5 |
| 294 | 165.27 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 23 | 3 |
| 297 | 165.27 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 328 | 165.39 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 350 | 165.46 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 357 | 165.49 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 24 | 1 |
| 379 | 165.55 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 8 | 21 |
| 421 | 165.67 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 529 | 165.95 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 541 | 165.98 | temperature | 25.0 | 720 | < th | dose dependent | no | NA | NA |
| 576 | 166.08 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 593 | 166.15 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 611 | 166.23 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 615 | 166.23 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 10 |
| 684 | 166.44 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 19 | 23 |
| 690 | 166.46 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 21 | 23 |
| 727 | 166.56 | temperature | 20.0 | 720 | > th | dose independent | rect. | 1 | 23 |
| 736 | 166.57 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 19 | 13 |
| 836 | 166.89 | wind | 3.0 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 933 | 167.17 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 952 | 167.23 | temperature | 20.0 | 720 | > th | dose independent | no | NA | NA |
| 999 | 167.35 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 16 | 1 |