BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0743800 Os01g0743800|Os01g0743800
         (187 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0743800  Similar to Histidine-containing phosphotransfe...   391   e-109
Os05g0186100  Hpt domain containing protein                       185   2e-47
Os08g0557700  Similar to Histidine-containing phosphotransfe...   110   8e-25
Os09g0567400  Similar to Histidine-containing phosphotransfe...    98   4e-21

>Os01g0743800 Similar to Histidine-containing phosphotransfer protein 4
          Length = 187

 Score =  391 bits (1005), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 187/187 (100%), Positives = 187/187 (100%)

Query: 1   MDRYAFLSFYKCTHQVGKFVGSDTWSNVLRESWFFNNWKELLVPVSLSTFLLLGLKGYLD 60
           MDRYAFLSFYKCTHQVGKFVGSDTWSNVLRESWFFNNWKELLVPVSLSTFLLLGLKGYLD
Sbjct: 1   MDRYAFLSFYKCTHQVGKFVGSDTWSNVLRESWFFNNWKELLVPVSLSTFLLLGLKGYLD 60

Query: 61  EQFCQVEDLQDEASPNFVEEVVTLFFKDSGRLMSNIEQALEKYPRDFNRWDTYMQQLKGS 120
           EQFCQVEDLQDEASPNFVEEVVTLFFKDSGRLMSNIEQALEKYPRDFNRWDTYMQQLKGS
Sbjct: 61  EQFCQVEDLQDEASPNFVEEVVTLFFKDSGRLMSNIEQALEKYPRDFNRWDTYMQQLKGS 120

Query: 121 CSSIGASRMKNECMSFRDSCGQGNVEGCMRSFQKVKREHAVLRQKLESYFQLLRQAGPAG 180
           CSSIGASRMKNECMSFRDSCGQGNVEGCMRSFQKVKREHAVLRQKLESYFQLLRQAGPAG
Sbjct: 121 CSSIGASRMKNECMSFRDSCGQGNVEGCMRSFQKVKREHAVLRQKLESYFQLLRQAGPAG 180

Query: 181 AATRPVM 187
           AATRPVM
Sbjct: 181 AATRPVM 187



>Os05g0186100 Hpt domain containing protein
          Length = 152

 Score =  185 bits (469), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 89/129 (68%), Positives = 105/129 (81%), Gaps = 1/129 (0%)

Query: 56  KGYLDEQFCQVEDLQDEASPNFVEEVVTLFFKDSGRLMSNIEQALEKYPRDFNRWDTYMQ 115
           +GYLDEQF Q+E+LQDE+SPNFVEEV  LFFKDS RL++NIEQA++KYP+DF R D+ +Q
Sbjct: 20  QGYLDEQFNQLEELQDESSPNFVEEVAALFFKDSSRLLTNIEQAIDKYPQDFYRLDSLVQ 79

Query: 116 QLKGS-CSSIGASRMKNECMSFRDSCGQGNVEGCMRSFQKVKREHAVLRQKLESYFQLLR 174
           QLKGS  SSIGA RMKNEC  F+ +C   N+EGC RS QK+KREHA L+QKLESYFQLLR
Sbjct: 80  QLKGSGSSSIGALRMKNECSVFKVNCNDRNLEGCRRSLQKMKREHATLKQKLESYFQLLR 139

Query: 175 QAGPAGAAT 183
           Q GP   A 
Sbjct: 140 QVGPRDYAV 148



>Os08g0557700 Similar to Histidine-containing phosphotransfer protein
          Length = 147

 Score =  110 bits (274), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 53/119 (44%), Positives = 80/119 (67%)

Query: 57  GYLDEQFCQVEDLQDEASPNFVEEVVTLFFKDSGRLMSNIEQALEKYPRDFNRWDTYMQQ 116
           G LD+QF Q++ LQD  +P+FV EVVTLF  D  R++  + + LEK   DF+R D+Y+ Q
Sbjct: 21  GLLDDQFQQLQMLQDSTAPDFVSEVVTLFCDDGERIICELSRQLEKPNVDFDRVDSYVHQ 80

Query: 117 LKGSCSSIGASRMKNECMSFRDSCGQGNVEGCMRSFQKVKREHAVLRQKLESYFQLLRQ 175
           LKGS +S+GA ++KN C+ FR+ C Q + +GC+++   V+ E   LR K ++  QL +Q
Sbjct: 81  LKGSSASVGAQKVKNTCIQFREFCQQRSRDGCLKTLDLVRTEFYDLRNKFQAMLQLEQQ 139



>Os09g0567400 Similar to Histidine-containing phosphotransfer protein
          Length = 149

 Score = 97.8 bits (242), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 50/121 (41%), Positives = 77/121 (63%), Gaps = 1/121 (0%)

Query: 56  KGYLDEQFCQVEDLQDEA-SPNFVEEVVTLFFKDSGRLMSNIEQALEKYPRDFNRWDTYM 114
           +G +DEQF Q++ LQDE  +P FV EVVTLF  D+ R+++ I   LE+   +F++ D Y+
Sbjct: 20  QGLVDEQFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEIATLLEQPVVNFDKVDAYV 79

Query: 115 QQLKGSCSSIGASRMKNECMSFRDSCGQGNVEGCMRSFQKVKREHAVLRQKLESYFQLLR 174
            QLKGS +S+GA ++K  CM FR  C   + +GC+ +   V+ +   LR K ++  QL +
Sbjct: 80  HQLKGSSASVGAQKVKFTCMQFRQFCQDKSRDGCLMALAVVRNDFYDLRNKFQTMLQLEQ 139

Query: 175 Q 175
           Q
Sbjct: 140 Q 140



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.135    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,399,445
Number of extensions: 250617
Number of successful extensions: 518
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 516
Number of HSP's successfully gapped: 4
Length of query: 187
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 92
Effective length of database: 12,075,471
Effective search space: 1110943332
Effective search space used: 1110943332
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 153 (63.5 bits)