Os01g0743800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Histidine-containing phosphotransfer protein 4.
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Os01g0743800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Histidine-containing phosphotransfer protein 4.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 122.43 | 0.52 | 10.1 | -1.84 | 0.632 | 1.38 | -0.143 | -3.91 | -0.312 | 20.8 | 25.1 | 4224 | -- | -- |
| 124.42 | 0.52 | 10.1 | -1.32 | 0.621 | 1.48 | -0.204 | -- | -0.316 | 20.8 | 21.2 | 5371 | -- | -- |
| 122.09 | 0.515 | 10.1 | -1.87 | 0.633 | 1.4 | -- | -4.08 | -0.335 | 20.7 | 25.36 | 4221 | -- | -- |
| 124.4 | 0.519 | 10 | -1.26 | 0.654 | 1.44 | -- | -- | -0.283 | 20.9 | 21.19 | 5385 | -- | -- |
| 140.65 | 0.552 | 10.1 | -1.86 | -- | 1.48 | -- | -3.8 | -0.368 | -- | 25.2 | 3798 | -- | -- |
| 166.5 | 0.605 | 9.94 | -0.37 | 0.673 | -- | -0.496 | -- | 0.189 | 21.6 | -- | -- | -- | -- |
| 167.17 | 0.605 | 9.94 | -0.349 | 0.685 | -- | -- | -- | 0.192 | 21.3 | -- | -- | -- | -- |
| 148.42 | 0.567 | 10 | -1.29 | -- | 1.49 | -- | -- | -0.291 | -- | 21.1 | 5250 | -- | -- |
| 146.74 | 0.564 | 9.97 | -- | 0.619 | 0.928 | -- | -- | 0.0415 | 20.8 | 25 | 3297 | -- | -- |
| 194.48 | 0.652 | 9.92 | -0.346 | -- | -- | -- | -- | 0.189 | -- | -- | -- | -- | -- |
| 170.38 | 0.611 | 9.93 | -- | 0.685 | -- | -- | -- | 0.231 | 21.2 | -- | -- | -- | -- |
| 161.12 | 0.591 | 9.99 | -- | -- | 1.07 | -- | -- | -0.0552 | -- | 25.1 | 2112 | -- | -- |
| 197.64 | 0.656 | 9.92 | -- | -- | -- | -- | -- | 0.227 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 117.76 | temperature | 20 | 4320 | > th | dose independent | rect. | 3 | 1 |
| 2 | 117.98 | temperature | 20 | 4320 | < th | dose independent | rect. | 3 | 1 |
| 7 | 118.46 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 6 |
| 9 | 118.63 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 9 |
| 12 | 118.66 | temperature | 20 | 4320 | > th | dose independent | rect. | 23 | 5 |
| 22 | 118.84 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 9 |
| 56 | 119.32 | temperature | 20 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 69 | 119.52 | temperature | 20 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 114 | 120.29 | humidity | 70 | 43200 | > th | dose independent | rect. | 22 | 11 |
| 133 | 120.63 | temperature | 25 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 136 | 120.68 | temperature | 25 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 146 | 120.89 | temperature | 20 | 4320 | < th | dose independent | sin | 10 | NA |
| 154 | 120.99 | temperature | 20 | 4320 | > th | dose independent | sin | 10 | NA |
| 159 | 121.01 | temperature | 15 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 171 | 121.18 | humidity | 70 | 43200 | < th | dose independent | rect. | 22 | 11 |
| 185 | 121.39 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 20 |
| 197 | 121.51 | temperature | 25 | 4320 | > th | dose independent | rect. | 11 | 19 |
| 224 | 121.73 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 20 |
| 238 | 121.86 | temperature | 25 | 4320 | < th | dose independent | rect. | 10 | 20 |
| 258 | 122.02 | temperature | 25 | 4320 | < th | dose independent | rect. | 13 | 17 |
| 370 | 122.59 | temperature | 30 | 4320 | < th | dose dependent | rect. | 2 | 1 |
| 429 | 122.83 | temperature | 25 | 4320 | > th | dose independent | sin | 15 | NA |
| 458 | 123.01 | temperature | 25 | 4320 | > th | dose independent | rect. | 24 | 23 |
| 464 | 123.03 | temperature | 25 | 4320 | < th | dose independent | sin | 15 | NA |
| 471 | 123.05 | temperature | 25 | 4320 | > th | dose independent | no | NA | NA |
| 492 | 123.12 | temperature | 25 | 4320 | > th | dose independent | rect. | 14 | 23 |
| 511 | 123.17 | temperature | 25 | 4320 | > th | dose independent | rect. | 24 | 15 |
| 528 | 123.22 | temperature | 25 | 4320 | < th | dose independent | rect. | 13 | 23 |
| 533 | 123.24 | temperature | 20 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 535 | 123.25 | temperature | 25 | 4320 | < th | dose independent | rect. | 24 | 23 |
| 563 | 123.33 | temperature | 25 | 4320 | < th | dose independent | no | NA | NA |
| 616 | 123.45 | temperature | 25 | 4320 | < th | dose independent | rect. | 24 | 15 |
| 659 | 123.53 | temperature | 25 | 4320 | < th | dose independent | rect. | 5 | 23 |
| 785 | 123.74 | temperature | 30 | 4320 | < th | dose dependent | rect. | 5 | 1 |
| 983 | 124.05 | temperature | 25 | 720 | < th | dose independent | rect. | 18 | 18 |