BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0743800 Os01g0743800|Os01g0743800
(187 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G16360.2 | chr3:5554351-5555518 FORWARD LENGTH=146 183 4e-47
AT3G21510.1 | chr3:7578432-7579537 REVERSE LENGTH=155 117 4e-27
AT1G03430.1 | chr1:848159-849235 FORWARD LENGTH=158 116 6e-27
AT3G29350.1 | chr3:11264379-11265408 REVERSE LENGTH=157 114 2e-26
AT5G39340.1 | chr5:15748941-15750248 FORWARD LENGTH=156 114 2e-26
AT1G80100.1 | chr1:30133818-30134652 FORWARD LENGTH=155 71 4e-13
AT4G04402.1 | chr4:2164007-2165404 FORWARD LENGTH=168 67 7e-12
AT5G19710.1 | chr5:6664745-6666107 REVERSE LENGTH=115 54 4e-08
>AT3G16360.2 | chr3:5554351-5555518 FORWARD LENGTH=146
Length = 145
Score = 183 bits (465), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 82/130 (63%), Positives = 106/130 (81%)
Query: 56 KGYLDEQFCQVEDLQDEASPNFVEEVVTLFFKDSGRLMSNIEQALEKYPRDFNRWDTYMQ 115
+GYLDEQF ++E+LQD+A+PNFVEEV L+FKDS RL++NI+QALE+ DFNR D+YM
Sbjct: 15 QGYLDEQFMELEELQDDANPNFVEEVSALYFKDSARLINNIDQALERGSFDFNRLDSYMH 74
Query: 116 QLKGSCSSIGASRMKNECMSFRDSCGQGNVEGCMRSFQKVKREHAVLRQKLESYFQLLRQ 175
Q KGS +SIGAS++K EC +FR+ C GN EGC+R+FQ++K+EH+ LR+KLE YFQL RQ
Sbjct: 75 QFKGSSTSIGASKVKAECTTFREYCRAGNAEGCLRTFQQLKKEHSTLRKKLEHYFQLARQ 134
Query: 176 AGPAGAATRP 185
AGP A RP
Sbjct: 135 AGPKETARRP 144
>AT3G21510.1 | chr3:7578432-7579537 REVERSE LENGTH=155
Length = 154
Score = 117 bits (292), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 62/134 (46%), Positives = 94/134 (70%)
Query: 53 LGLKGYLDEQFCQVEDLQDEASPNFVEEVVTLFFKDSGRLMSNIEQALEKYPRDFNRWDT 112
L L+G LD QF Q++ LQDE++P+FV +VVTLFF+DS R+++++ +L++ DF + D
Sbjct: 17 LFLEGILDSQFLQLQQLQDESNPDFVSQVVTLFFQDSDRILNDLSLSLDQQVVDFKKVDP 76
Query: 113 YMQQLKGSCSSIGASRMKNECMSFRDSCGQGNVEGCMRSFQKVKREHAVLRQKLESYFQL 172
++ QLKGS SSIGA R+KN C+ FR C Q NVE C R Q+VK+E+ +++ +LE+ F+L
Sbjct: 77 HVHQLKGSSSSIGAQRVKNACVVFRSFCEQQNVEACHRCLQQVKQEYYLVKNRLETLFKL 136
Query: 173 LRQAGPAGAATRPV 186
+Q +G V
Sbjct: 137 EQQIVASGGMIPAV 150
>AT1G03430.1 | chr1:848159-849235 FORWARD LENGTH=158
Length = 157
Score = 116 bits (291), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 58/132 (43%), Positives = 86/132 (65%), Gaps = 1/132 (0%)
Query: 56 KGYLDEQFCQVEDLQDEASPNFVEEVVTLFFKDSGRLMSNIEQALEKYPR-DFNRWDTYM 114
+G+LD QF ++ LQDE +P+FV EVV+LFF D +L++ + +LE+ DF + D+ +
Sbjct: 23 QGFLDNQFSELRKLQDEGTPDFVAEVVSLFFDDCSKLINTMSISLERPDNVDFKQVDSGV 82
Query: 115 QQLKGSCSSIGASRMKNECMSFRDSCGQGNVEGCMRSFQKVKREHAVLRQKLESYFQLLR 174
QLKGS SS+GA R+KN C+SF++ C N EGC+R Q+V E+ +L+ KL+ F L +
Sbjct: 83 HQLKGSSSSVGARRVKNVCISFKECCDVQNREGCLRCLQQVDYEYKMLKTKLQDLFNLEK 142
Query: 175 QAGPAGAATRPV 186
Q AG V
Sbjct: 143 QILQAGGTIPQV 154
>AT3G29350.1 | chr3:11264379-11265408 REVERSE LENGTH=157
Length = 156
Score = 114 bits (286), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/132 (43%), Positives = 87/132 (65%), Gaps = 1/132 (0%)
Query: 56 KGYLDEQFCQVEDLQDEASPNFVEEVVTLFFKDSGRLMSNIEQALEKYPR-DFNRWDTYM 114
+G+LD+QF +++ LQD+ SP+FV EV++LFF+D +L+SN+ +AL+ DF++ +
Sbjct: 22 QGFLDDQFTELKKLQDDGSPDFVSEVLSLFFEDCVKLISNMARALDTTGTVDFSQVGASV 81
Query: 115 QQLKGSCSSIGASRMKNECMSFRDSCGQGNVEGCMRSFQKVKREHAVLRQKLESYFQLLR 174
QLKGS SS+GA R+K C+SF++ C N EGC+R Q+V E+ L+ KL+ F L +
Sbjct: 82 HQLKGSSSSVGAKRVKTLCVSFKECCEAKNYEGCVRCLQQVDIEYKALKTKLQDMFNLEK 141
Query: 175 QAGPAGAATRPV 186
Q AG V
Sbjct: 142 QIIQAGGIVPQV 153
>AT5G39340.1 | chr5:15748941-15750248 FORWARD LENGTH=156
Length = 155
Score = 114 bits (286), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/127 (44%), Positives = 85/127 (66%), Gaps = 1/127 (0%)
Query: 56 KGYLDEQFCQVEDLQDEASPNFVEEVVTLFFKDSGRLMSNIEQALEKYPR-DFNRWDTYM 114
+G+LD+QF +++ LQDE SP+FV EVVTLFF+D +L+SN+ +AL++ DF + +
Sbjct: 22 QGFLDDQFTELKKLQDECSPDFVAEVVTLFFEDCEKLISNMARALDQTGNVDFKLVGSSV 81
Query: 115 QQLKGSCSSIGASRMKNECMSFRDSCGQGNVEGCMRSFQKVKREHAVLRQKLESYFQLLR 174
QLKGS SS+GA R+K C++ ++ C N EGC+R Q+V E+ L+ KL+ F L +
Sbjct: 82 HQLKGSSSSVGAKRVKGLCVTLKECCDSQNYEGCVRCLQQVDIEYKTLKAKLQDLFNLEQ 141
Query: 175 QAGPAGA 181
Q AG
Sbjct: 142 QIVQAGG 148
>AT1G80100.1 | chr1:30133818-30134652 FORWARD LENGTH=155
Length = 154
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 66/115 (57%), Gaps = 1/115 (0%)
Query: 73 ASPNFVEEVVTLFFKDSGRLMSNIEQA-LEKYPRDFNRWDTYMQQLKGSCSSIGASRMKN 131
SPNFV +V+ ++F +S +L+ N+ +++ D+ + ++ QL GS SSIGA R++N
Sbjct: 40 TSPNFVYDVINIYFDESEKLLRNLRLLLMDREFSDYKKIGLHLNQLVGSSSSIGARRVRN 99
Query: 132 ECMSFRDSCGQGNVEGCMRSFQKVKREHAVLRQKLESYFQLLRQAGPAGAATRPV 186
C++FR + N GC+R + V+ E+ L+ + FQL +Q A P+
Sbjct: 100 VCVAFRSASELSNRPGCLRGLEVVEHEYHYLKNMMHELFQLEQQRILAAGVRYPM 154
>AT4G04402.1 | chr4:2164007-2165404 FORWARD LENGTH=168
Length = 167
Score = 66.6 bits (161), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 76/140 (54%), Gaps = 13/140 (9%)
Query: 54 GLKGYLDEQFCQVEDLQDEASPNFVEEVVTLFFKDSGRLMSNIEQALEKY--PRDFNR-- 109
G G+LD+QF +++ LQD+ SP+FV EV++LFF+D +L+SN+ +AL+K DF +
Sbjct: 21 GFLGFLDDQFTELKKLQDDGSPDFVAEVLSLFFEDCVKLISNMARALDKSTGTVDFGQMK 80
Query: 110 -------WDTYMQQLKGSCSSIGASRMKNECMSFRDSCGQGNVEGC-MRSFQKVKREHAV 161
+DT + + +GS + ASR + + Q + +R Q+V E+
Sbjct: 81 LFSCTLVFDTVLVR-RGSKLCVLASRNIAKLRITKGKLVQHRLRTHRLRCLQQVDIEYKT 139
Query: 162 LRQKLESYFQLLRQAGPAGA 181
L KL+ F L +Q AG
Sbjct: 140 LTTKLQDMFNLEKQIIQAGG 159
>AT5G19710.1 | chr5:6664745-6666107 REVERSE LENGTH=115
Length = 114
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 47/106 (44%), Gaps = 4/106 (3%)
Query: 78 VEEVVTLFFKDSGRLMSNIEQALEKYPRDFNRWDTYMQQLKGSCSSIGASRMKNECMSFR 137
VEE+ FF + R + YP + Q IGA ++ E
Sbjct: 10 VEEMRQSFFDEGARA----NRGTHDYPMHSSARKQQRQASYNIFVIIGAIKVVKELKKAN 65
Query: 138 DSCGQGNVEGCMRSFQKVKREHAVLRQKLESYFQLLRQAGPAGAAT 183
GN+EG + +K+EH+ LR K E+YFQL+RQAGP A
Sbjct: 66 TFLKAGNIEGVKGALPDIKKEHSELRAKFETYFQLMRQAGPTDVAV 111
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.135 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,212,136
Number of extensions: 172142
Number of successful extensions: 455
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 451
Number of HSP's successfully gapped: 8
Length of query: 187
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 94
Effective length of database: 8,556,881
Effective search space: 804346814
Effective search space used: 804346814
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 108 (46.2 bits)