Os08g0557700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Histidine-containing phosphotransfer protein.
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Os08g0557700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Histidine-containing phosphotransfer protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 51.08 | 0.336 | 11.1 | -0.601 | 1.11 | 0.921 | 0.602 | 0.904 | 0.0281 | 0.494 | 70 | 1301 | -- | -- |
| 52.52 | 0.338 | 11.1 | -0.469 | 1.1 | 0.956 | 0.49 | -- | 0.00411 | 0.524 | 70 | 1277 | -- | -- |
| 52.56 | 0.338 | 11.1 | -0.601 | 1.12 | 0.914 | -- | 0.742 | 0.0306 | 0.493 | 70.07 | 1275 | -- | -- |
| 53.45 | 0.341 | 11.1 | -0.483 | 1.14 | 0.972 | -- | -- | 0.00736 | 0.488 | 70 | 1257 | -- | -- |
| 107.38 | 0.485 | 11.1 | -0.64 | -- | 0.64 | -- | 0.185 | -0.0945 | -- | 70.07 | 1275 | -- | -- |
| 88.2 | 0.44 | 11.1 | -0.687 | 0.945 | -- | 0.293 | -- | -0.071 | 0.303 | -- | -- | -- | -- |
| 88.57 | 0.441 | 11.1 | -0.698 | 0.944 | -- | -- | -- | -0.0725 | 0.318 | -- | -- | -- | -- |
| 101.51 | 0.469 | 11 | -0.561 | -- | 1.15 | -- | -- | 0.0905 | -- | 72 | 1620 | -- | -- |
| 59.43 | 0.359 | 11.1 | -- | 1.15 | 1.05 | -- | -- | 0.0627 | 0.48 | 69.8 | 1257 | -- | -- |
| 144.65 | 0.562 | 11.1 | -0.667 | -- | -- | -- | -- | -0.0577 | -- | -- | -- | -- | -- |
| 101.42 | 0.471 | 11.1 | -- | 0.935 | -- | -- | -- | 0.00524 | 0.279 | -- | -- | -- | -- |
| 107.26 | 0.482 | 11 | -- | -- | 1.25 | -- | -- | 0.144 | -- | 70.79 | 1612 | -- | -- |
| 156.38 | 0.584 | 11.1 | -- | -- | -- | -- | -- | 0.0163 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 47.67 | wind | 3 | 43200 | > th | dose dependent | rect. | 5 | 2 |
| 3 | 48.36 | temperature | 10 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 36 | 48.83 | temperature | 30 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 143 | 49.40 | temperature | 10 | 14400 | > th | dose dependent | sin | 20 | NA |
| 196 | 49.55 | wind | 3 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 215 | 49.59 | wind | 3 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 244 | 49.67 | wind | 3 | 43200 | > th | dose independent | rect. | 3 | 3 |
| 283 | 49.77 | wind | 3 | 43200 | < th | dose independent | rect. | 2 | 3 |
| 284 | 49.77 | wind | 3 | 43200 | > th | dose independent | rect. | 3 | 6 |
| 320 | 49.86 | temperature | 30 | 14400 | < th | dose dependent | sin | 19 | NA |
| 322 | 49.86 | wind | 1 | 43200 | > th | dose dependent | rect. | 2 | 8 |
| 327 | 49.87 | wind | 5 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 365 | 49.94 | temperature | 20 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 451 | 50.12 | wind | 1 | 43200 | > th | dose dependent | rect. | 2 | 5 |
| 513 | 50.23 | temperature | 20 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 516 | 50.23 | wind | 9 | 43200 | < th | dose dependent | rect. | 2 | 8 |
| 634 | 50.44 | wind | 9 | 43200 | < th | dose dependent | rect. | 2 | 5 |
| 708 | 50.54 | wind | 3 | 43200 | < th | dose independent | rect. | 3 | 6 |
| 855 | 50.76 | temperature | 10 | 14400 | > th | dose dependent | no | NA | NA |
| 892 | 50.80 | temperature | 10 | 14400 | > th | dose dependent | rect. | 12 | 23 |
| 960 | 50.88 | temperature | 10 | 14400 | > th | dose dependent | rect. | 15 | 23 |
| 984 | 50.92 | wind | 5 | 43200 | > th | dose independent | rect. | 6 | 1 |