BLAST Search Results

BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0557700 Os08g0557700|AK061111
         (147 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G21510.1  | chr3:7578432-7579537 REVERSE LENGTH=155            117   2e-27
AT1G03430.1  | chr1:848159-849235 FORWARD LENGTH=158              113   5e-26
AT5G39340.1  | chr5:15748941-15750248 FORWARD LENGTH=156          100   2e-22
AT3G16360.2  | chr3:5554351-5555518 FORWARD LENGTH=146             99   1e-21
AT3G29350.1  | chr3:11264379-11265408 REVERSE LENGTH=157           98   1e-21
AT1G80100.1  | chr1:30133818-30134652 FORWARD LENGTH=155           85   1e-17
AT4G04402.1  | chr4:2164007-2165404 FORWARD LENGTH=168             47   5e-06

>AT3G21510.1 | chr3:7578432-7579537 REVERSE LENGTH=155
          Length = 154

 Score =  117 bits (293), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 54/106 (50%), Positives = 80/106 (75%)

Query: 37  TAPDFVSEVVTLFCDDGERIICELSRQLEKPNVDFDRVDSYVHQLKGSSASVGAQKVKNT 96
           + PDFVS+VVTLF  D +RI+ +LS  L++  VDF +VD +VHQLKGSS+S+GAQ+VKN 
Sbjct: 37  SNPDFVSQVVTLFFQDSDRILNDLSLSLDQQVVDFKKVDPHVHQLKGSSSSIGAQRVKNA 96

Query: 97  CIQFREFCQQRSRDGCLKTLDLVRTEFYDLRNKFQAMLQLEQQIQA 142
           C+ FR FC+Q++ + C + L  V+ E+Y ++N+ + + +LEQQI A
Sbjct: 97  CVVFRSFCEQQNVEACHRCLQQVKQEYYLVKNRLETLFKLEQQIVA 142



>AT1G03430.1 | chr1:848159-849235 FORWARD LENGTH=158
          Length = 157

 Score =  113 bits (282), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 61/141 (43%), Positives = 85/141 (60%), Gaps = 1/141 (0%)

Query: 1   MAAAALTSQLNALVNNMFAMGXXXXXXXXXXXXXXSTAPDFVSEVVTLFCDDGERIICEL 60
           +  A L  Q    + +++  G                 PDFV+EVV+LF DD  ++I  +
Sbjct: 4   IVVAQLQRQFQDYIVSLYQQGFLDNQFSELRKLQDEGTPDFVAEVVSLFFDDCSKLINTM 63

Query: 61  SRQLEKP-NVDFDRVDSYVHQLKGSSASVGAQKVKNTCIQFREFCQQRSRDGCLKTLDLV 119
           S  LE+P NVDF +VDS VHQLKGSS+SVGA++VKN CI F+E C  ++R+GCL+ L  V
Sbjct: 64  SISLERPDNVDFKQVDSGVHQLKGSSSSVGARRVKNVCISFKECCDVQNREGCLRCLQQV 123

Query: 120 RTEFYDLRNKFQAMLQLEQQI 140
             E+  L+ K Q +  LE+QI
Sbjct: 124 DYEYKMLKTKLQDLFNLEKQI 144



>AT5G39340.1 | chr5:15748941-15750248 FORWARD LENGTH=156
          Length = 155

 Score =  100 bits (250), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 51/104 (49%), Positives = 73/104 (70%), Gaps = 1/104 (0%)

Query: 38  APDFVSEVVTLFCDDGERIICELSRQLEKP-NVDFDRVDSYVHQLKGSSASVGAQKVKNT 96
           +PDFV+EVVTLF +D E++I  ++R L++  NVDF  V S VHQLKGSS+SVGA++VK  
Sbjct: 40  SPDFVAEVVTLFFEDCEKLISNMARALDQTGNVDFKLVGSSVHQLKGSSSSVGAKRVKGL 99

Query: 97  CIQFREFCQQRSRDGCLKTLDLVRTEFYDLRNKFQAMLQLEQQI 140
           C+  +E C  ++ +GC++ L  V  E+  L+ K Q +  LEQQI
Sbjct: 100 CVTLKECCDSQNYEGCVRCLQQVDIEYKTLKAKLQDLFNLEQQI 143



>AT3G16360.2 | chr3:5554351-5555518 FORWARD LENGTH=146
          Length = 145

 Score = 98.6 bits (244), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 45/101 (44%), Positives = 65/101 (64%)

Query: 39  PDFVSEVVTLFCDDGERIICELSRQLEKPNVDFDRVDSYVHQLKGSSASVGAQKVKNTCI 98
           P+FV EV  L+  D  R+I  + + LE+ + DF+R+DSY+HQ KGSS S+GA KVK  C 
Sbjct: 34  PNFVEEVSALYFKDSARLINNIDQALERGSFDFNRLDSYMHQFKGSSTSIGASKVKAECT 93

Query: 99  QFREFCQQRSRDGCLKTLDLVRTEFYDLRNKFQAMLQLEQQ 139
            FRE+C+  + +GCL+T   ++ E   LR K +   QL +Q
Sbjct: 94  TFREYCRAGNAEGCLRTFQQLKKEHSTLRKKLEHYFQLARQ 134



>AT3G29350.1 | chr3:11264379-11265408 REVERSE LENGTH=157
          Length = 156

 Score = 98.2 bits (243), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 48/104 (46%), Positives = 73/104 (70%), Gaps = 1/104 (0%)

Query: 38  APDFVSEVVTLFCDDGERIICELSRQLEKPN-VDFDRVDSYVHQLKGSSASVGAQKVKNT 96
           +PDFVSEV++LF +D  ++I  ++R L+    VDF +V + VHQLKGSS+SVGA++VK  
Sbjct: 40  SPDFVSEVLSLFFEDCVKLISNMARALDTTGTVDFSQVGASVHQLKGSSSSVGAKRVKTL 99

Query: 97  CIQFREFCQQRSRDGCLKTLDLVRTEFYDLRNKFQAMLQLEQQI 140
           C+ F+E C+ ++ +GC++ L  V  E+  L+ K Q M  LE+QI
Sbjct: 100 CVSFKECCEAKNYEGCVRCLQQVDIEYKALKTKLQDMFNLEKQI 143



>AT1G80100.1 | chr1:30133818-30134652 FORWARD LENGTH=155
          Length = 154

 Score = 84.7 bits (208), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 80/135 (59%), Gaps = 1/135 (0%)

Query: 6   LTSQLNALVNNMFAMGXXXXXXXXXXXXXXSTAPDFVSEVVTLFCDDGERIICELSRQ-L 64
           L + +N L+ ++F  G               T+P+FV +V+ ++ D+ E+++  L    +
Sbjct: 9   LQADINRLLASLFHQGVLDEQFLQLQQLQDETSPNFVYDVINIYFDESEKLLRNLRLLLM 68

Query: 65  EKPNVDFDRVDSYVHQLKGSSASVGAQKVKNTCIQFREFCQQRSRDGCLKTLDLVRTEFY 124
           ++   D+ ++  +++QL GSS+S+GA++V+N C+ FR   +  +R GCL+ L++V  E++
Sbjct: 69  DREFSDYKKIGLHLNQLVGSSSSIGARRVRNVCVAFRSASELSNRPGCLRGLEVVEHEYH 128

Query: 125 DLRNKFQAMLQLEQQ 139
            L+N    + QLEQQ
Sbjct: 129 YLKNMMHELFQLEQQ 143



>AT4G04402.1 | chr4:2164007-2165404 FORWARD LENGTH=168
          Length = 167

 Score = 46.6 bits (109), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 57/114 (50%), Gaps = 11/114 (9%)

Query: 38  APDFVSEVVTLFCDDGERIICELSRQLEKP--NVDFDRVDSYVHQL--------KGSSAS 87
           +PDFV+EV++LF +D  ++I  ++R L+K    VDF ++  +   L        +GS   
Sbjct: 41  SPDFVAEVLSLFFEDCVKLISNMARALDKSTGTVDFGQMKLFSCTLVFDTVLVRRGSKLC 100

Query: 88  VGAQK-VKNTCIQFREFCQQRSRDGCLKTLDLVRTEFYDLRNKFQAMLQLEQQI 140
           V A + +    I   +  Q R R   L+ L  V  E+  L  K Q M  LE+QI
Sbjct: 101 VLASRNIAKLRITKGKLVQHRLRTHRLRCLQQVDIEYKTLTTKLQDMFNLEKQI 154



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.133    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,540,082
Number of extensions: 86481
Number of successful extensions: 290
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 286
Number of HSP's successfully gapped: 7
Length of query: 147
Length of database: 11,106,569
Length adjustment: 89
Effective length of query: 58
Effective length of database: 8,666,545
Effective search space: 502659610
Effective search space used: 502659610
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 107 (45.8 bits)