Os09g0567400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Histidine-containing phosphotransfer protein.
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Os09g0567400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Histidine-containing phosphotransfer protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18.03 | 0.2 | 11.2 | 0.189 | 1.05 | -0.315 | 0.167 | -0.191 | -0.0613 | 7.61 | 20.5 | 1233 | -- | -- |
| 18.1 | 0.198 | 11.2 | 0.221 | 1.04 | -0.287 | 0.179 | -- | -0.054 | 7.6 | 20.5 | 1169 | -- | -- |
| 18.11 | 0.198 | 11.2 | 0.192 | 1.05 | -0.318 | -- | -0.198 | -0.0614 | 7.61 | 20.5 | 1233 | -- | -- |
| 18.19 | 0.199 | 11.2 | 0.227 | 1.04 | -0.289 | -- | -- | -0.0544 | 7.6 | 20.53 | 1185 | -- | -- |
| 54.69 | 0.344 | 11.2 | 0.323 | -- | -0.641 | -- | 0.155 | 0.105 | -- | 25.8 | 483 | -- | -- |
| 20.12 | 0.21 | 11.2 | 0.103 | 1.05 | -- | 0.207 | -- | -0.12 | 7.69 | -- | -- | -- | -- |
| 20.24 | 0.211 | 11.2 | 0.109 | 1.05 | -- | -- | -- | -0.12 | 7.69 | -- | -- | -- | -- |
| 54.56 | 0.344 | 11.2 | 0.311 | -- | -0.673 | -- | -- | 0.0952 | -- | 25.84 | 513 | -- | -- |
| 19.28 | 0.204 | 11.2 | -- | 1.03 | -0.2 | -- | -- | -0.094 | 7.6 | 20.6 | 862 | -- | -- |
| 79.61 | 0.417 | 11.2 | 0.122 | -- | -- | -- | -- | -0.105 | -- | -- | -- | -- | -- |
| 20.55 | 0.212 | 11.2 | -- | 1.05 | -- | -- | -- | -0.132 | 7.68 | -- | -- | -- | -- |
| 57.01 | 0.352 | 11.2 | -- | -- | -0.631 | -- | -- | 0.0499 | -- | 25.9 | 510 | -- | -- |
| 80.01 | 0.418 | 11.2 | -- | -- | -- | -- | -- | -0.119 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 16.44 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 21 | 16 |
| 3 | 16.50 | temperature | 20.0 | 270 | > th | dose independent | rect. | 6 | 20 |
| 9 | 16.75 | temperature | 20.0 | 90 | > th | dose independent | rect. | 21 | 7 |
| 13 | 16.80 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 6 | 9 |
| 18 | 16.84 | humidity | 70.0 | 90 | > th | dose dependent | rect. | 21 | 7 |
| 19 | 16.86 | temperature | 20.0 | 270 | > th | dose independent | rect. | 21 | 5 |
| 31 | 16.97 | temperature | 20.0 | 270 | > th | dose independent | rect. | 21 | 16 |
| 32 | 16.97 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 7 | 21 |
| 64 | 17.14 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 2 | 17 |
| 69 | 17.15 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 2 | 9 |
| 76 | 17.16 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 82 | 17.20 | temperature | 20.0 | 270 | > th | dose independent | rect. | 19 | 20 |
| 85 | 17.20 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 2 | 15 |
| 88 | 17.21 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 21 | 7 |
| 122 | 17.27 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 4 | 17 |
| 125 | 17.27 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 4 | 17 |
| 133 | 17.29 | temperature | 25.0 | 270 | < th | dose independent | rect. | 2 | 9 |
| 144 | 17.30 | wind | 5.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 150 | 17.31 | wind | 7.0 | 270 | < th | dose independent | rect. | 6 | 9 |
| 169 | 17.34 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 4 | 17 |
| 175 | 17.35 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 1 | 14 |
| 203 | 17.39 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 21 | 7 |
| 235 | 17.44 | humidity | 80.0 | 90 | > th | dose independent | rect. | 21 | 7 |
| 246 | 17.45 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 12 | 16 |
| 272 | 17.48 | atmosphere | 1000.0 | 10 | > th | dose dependent | rect. | 15 | 17 |
| 275 | 17.49 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 3 |
| 276 | 17.49 | temperature | 10.0 | 90 | > th | dose independent | rect. | 21 | 7 |
| 278 | 17.49 | temperature | 30.0 | 90 | < th | dose independent | rect. | 21 | 7 |
| 279 | 17.49 | humidity | 50.0 | 90 | > th | dose independent | rect. | 21 | 7 |
| 282 | 17.49 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 21 | 7 |
| 283 | 17.49 | radiation | 1.0 | 90 | < th | dose independent | rect. | 21 | 7 |
| 290 | 17.49 | temperature | 10.0 | 90 | > th | dose independent | rect. | 4 | 17 |
| 291 | 17.49 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 4 | 17 |
| 292 | 17.49 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 294 | 17.49 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 21 | 7 |
| 300 | 17.49 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 4 | 13 |
| 302 | 17.50 | wind | 9.0 | 90 | < th | dose independent | rect. | 21 | 7 |
| 304 | 17.50 | temperature | 15.0 | 270 | > th | dose independent | rect. | 6 | 9 |
| 308 | 17.50 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 21 | 7 |
| 313 | 17.51 | temperature | 20.0 | 270 | > th | dose independent | rect. | 23 | 1 |
| 315 | 17.51 | temperature | 25.0 | 270 | < th | dose independent | rect. | 2 | 15 |
| 322 | 17.52 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 21 | 7 |
| 323 | 17.52 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 2 | 19 |
| 325 | 17.52 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 21 | 7 |
| 334 | 17.52 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 2 | 19 |
| 347 | 17.54 | radiation | 1.0 | 30 | < th | dose independent | rect. | 21 | 17 |
| 367 | 17.56 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 16 | 14 |
| 374 | 17.56 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 16 | 14 |
| 375 | 17.56 | humidity | 80.0 | 30 | > th | dose dependent | rect. | 13 | 15 |
| 384 | 17.57 | temperature | 25.0 | 270 | < th | dose independent | rect. | 2 | 17 |
| 385 | 17.57 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 21 |
| 386 | 17.57 | wind | 9.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 387 | 17.57 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 8 | 8 |
| 392 | 17.58 | radiation | 1.0 | 30 | > th | dose independent | sin | 10 | NA |
| 397 | 17.58 | humidity | 70.0 | 270 | > th | dose dependent | rect. | 22 | 3 |
| 411 | 17.59 | humidity | 50.0 | 270 | > th | dose independent | rect. | 6 | 21 |
| 420 | 17.60 | radiation | 1.0 | 30 | < th | dose independent | sin | 10 | NA |
| 434 | 17.61 | temperature | 20.0 | 10 | > th | dose independent | rect. | 23 | 16 |
| 439 | 17.61 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 21 | 8 |
| 440 | 17.61 | humidity | 70.0 | 90 | > th | dose dependent | rect. | 17 | 11 |
| 447 | 17.62 | radiation | 1.0 | 30 | < th | dose independent | rect. | 21 | 11 |
| 454 | 17.62 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 4 | 17 |
| 463 | 17.62 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 21 | 17 |
| 466 | 17.62 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 8 | 20 |
| 470 | 17.62 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 21 | 21 |
| 473 | 17.63 | humidity | 50.0 | 10 | > th | dose independent | rect. | 8 | 21 |
| 503 | 17.65 | wind | 9.0 | 90 | < th | dose dependent | rect. | 21 | 7 |
| 512 | 17.66 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 514 | 17.66 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 515 | 17.66 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 518 | 17.66 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 519 | 17.66 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 520 | 17.66 | radiation | 20.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 529 | 17.66 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 21 |
| 530 | 17.66 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 7 | 21 |
| 544 | 17.66 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 7 | 21 |
| 551 | 17.67 | radiation | 1.0 | 30 | > th | dose independent | rect. | 5 | 3 |
| 566 | 17.67 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 567 | 17.67 | wind | 7.0 | 10 | < th | dose dependent | rect. | 5 | 3 |
| 570 | 17.67 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 23 | 6 |
| 583 | 17.68 | wind | 9.0 | 90 | < th | dose independent | rect. | 4 | 17 |
| 602 | 17.69 | wind | 5.0 | 10 | < th | dose independent | rect. | 5 | 3 |
| 605 | 17.69 | wind | 1.0 | 270 | > th | dose independent | rect. | 15 | 15 |
| 608 | 17.69 | radiation | 1.0 | 30 | < th | dose dependent | sin | 10 | NA |
| 617 | 17.69 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 21 | 11 |
| 636 | 17.70 | humidity | 50.0 | 270 | > th | dose independent | rect. | 6 | 9 |
| 641 | 17.70 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 686 | 17.71 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 22 | 7 |
| 690 | 17.72 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 21 | 8 |
| 691 | 17.72 | radiation | 1.0 | 30 | < th | dose independent | rect. | 21 | 9 |
| 695 | 17.72 | temperature | 30.0 | 270 | < th | dose dependent | sin | 6 | NA |
| 709 | 17.73 | temperature | 25.0 | 270 | > th | dose independent | rect. | 7 | 7 |
| 734 | 17.74 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 2 | 5 |
| 739 | 17.74 | wind | 9.0 | 10 | < th | dose independent | rect. | 8 | 21 |
| 746 | 17.74 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 2 | 5 |
| 751 | 17.74 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 2 | 8 |
| 753 | 17.74 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 21 | 9 |
| 784 | 17.75 | humidity | 70.0 | 270 | > th | dose dependent | rect. | 23 | 1 |
| 818 | 17.76 | atmosphere | 1000.0 | 10 | > th | dose dependent | rect. | 5 | 3 |
| 842 | 17.77 | temperature | 20.0 | 10 | > th | dose independent | rect. | 1 | 3 |
| 882 | 17.78 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 21 | 5 |
| 888 | 17.78 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 8 | 21 |
| 894 | 17.78 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 21 | 5 |
| 920 | 17.79 | wind | 7.0 | 270 | < th | dose independent | rect. | 15 | 15 |
| 948 | 17.80 | temperature | 10.0 | 270 | > th | dose independent | rect. | 21 | 5 |
| 949 | 17.80 | temperature | 30.0 | 270 | < th | dose independent | rect. | 21 | 5 |
| 950 | 17.80 | humidity | 50.0 | 270 | > th | dose independent | rect. | 21 | 5 |
| 953 | 17.80 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 21 | 5 |
| 954 | 17.80 | radiation | 1.0 | 270 | < th | dose independent | rect. | 21 | 5 |
| 959 | 17.80 | temperature | 10.0 | 10 | > th | dose independent | rect. | 21 | 8 |
| 960 | 17.80 | temperature | 30.0 | 10 | < th | dose independent | rect. | 21 | 8 |
| 961 | 17.80 | humidity | 50.0 | 10 | > th | dose independent | rect. | 21 | 8 |
| 964 | 17.80 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 21 | 8 |
| 970 | 17.80 | temperature | 10.0 | 10 | > th | dose independent | rect. | 5 | 16 |
| 972 | 17.80 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 5 | 16 |
| 977 | 17.80 | temperature | 10.0 | 270 | > th | dose independent | rect. | 2 | 19 |
| 983 | 17.80 | wind | 9.0 | 270 | < th | dose dependent | rect. | 2 | 5 |
| 985 | 17.80 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 21 | 5 |