Os05g0186100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hpt domain containing protein.
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Os05g0186100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hpt domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 259.72 | 0.757 | 8.26 | -3.18 | 1.31 | -0.382 | 1.69 | 2.34 | -0.492 | 9.04 | 20.1 | 10 | -- | -- |
| 276.82 | 0.775 | 8.34 | -3.36 | 1.39 | -0.89 | 2.11 | -- | -0.593 | 9.25 | 19 | 2 | -- | -- |
| 268.67 | 0.769 | 8.25 | -3.08 | 1.32 | -0.364 | -- | 2.64 | -0.484 | 8.81 | 20.1 | 10 | -- | -- |
| 292.2 | 0.796 | 8.3 | -3.39 | 1.34 | -0.913 | -- | -- | -0.549 | 9.1 | 19.17 | 2 | -- | -- |
| 359.75 | 0.888 | 8.3 | -3.09 | -- | -0.0809 | -- | 2.79 | -0.515 | -- | 20.67 | 10 | -- | -- |
| 297.84 | 0.809 | 8.33 | -3.74 | 1.23 | -- | 2.4 | -- | -0.676 | 9.24 | -- | -- | -- | -- |
| 316.24 | 0.833 | 8.33 | -3.67 | 1.25 | -- | -- | -- | -0.678 | 8.64 | -- | -- | -- | -- |
| 385.13 | 0.914 | 8.33 | -3.35 | -- | -0.925 | -- | -- | -0.517 | -- | 19.51 | 399 | -- | -- |
| 570.84 | 1.11 | 8.19 | -- | 1.44 | -1.8 | -- | -- | -0.077 | 9.64 | 19.04 | 2 | -- | -- |
| 404.75 | 0.94 | 8.36 | -3.66 | -- | -- | -- | -- | -0.668 | -- | -- | -- | -- | -- |
| 670.5 | 1.21 | 8.24 | -- | 1.24 | -- | -- | -- | -0.27 | 8.86 | -- | -- | -- | -- |
| 400.84 | 0.932 | 8.11 | -- | -- | -2.98 | -- | -- | 0.463 | -- | 18.52 | 47520 | -- | -- |
| 758.65 | 1.29 | 8.27 | -- | -- | -- | -- | -- | -0.261 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 249.19 | radiation | 1 | 720 | > th | dose independent | rect. | 18 | 11 |
| 2 | 251.54 | radiation | 1 | 720 | > th | dose dependent | rect. | 17 | 13 |
| 3 | 252.45 | radiation | 1 | 720 | > th | dose independent | rect. | 18 | 1 |
| 13 | 253.72 | temperature | 20 | 10 | > th | dose independent | sin | 15 | NA |
| 14 | 253.82 | temperature | 20 | 10 | < th | dose independent | sin | 12 | NA |
| 19 | 254.76 | temperature | 20 | 10 | > th | dose independent | rect. | 15 | 23 |
| 24 | 255.81 | radiation | 1 | 720 | > th | dose dependent | rect. | 17 | 2 |
| 34 | 256.35 | temperature | 20 | 90 | > th | dose dependent | rect. | 15 | 21 |
| 39 | 256.93 | temperature | 20 | 10 | < th | dose independent | rect. | 18 | 12 |
| 40 | 256.96 | temperature | 20 | 10 | > th | dose independent | rect. | 8 | 23 |
| 41 | 257.08 | radiation | 10 | 1440 | < th | dose independent | rect. | 14 | 8 |
| 43 | 257.10 | radiation | 10 | 1440 | < th | dose independent | rect. | 14 | 10 |
| 49 | 257.24 | temperature | 20 | 10 | < th | dose independent | rect. | 18 | 14 |
| 54 | 257.33 | radiation | 10 | 1440 | < th | dose independent | rect. | 14 | 12 |
| 56 | 257.35 | radiation | 10 | 1440 | < th | dose independent | rect. | 14 | 14 |
| 64 | 257.67 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 14 |
| 68 | 257.75 | radiation | 10 | 1440 | < th | dose independent | sin | 16 | NA |
| 69 | 257.79 | temperature | 20 | 10 | > th | dose independent | rect. | 15 | 13 |
| 70 | 257.80 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 12 |
| 73 | 257.82 | radiation | 10 | 1440 | < th | dose independent | rect. | 12 | 18 |
| 75 | 257.86 | temperature | 20 | 10 | > th | dose independent | rect. | 8 | 21 |
| 78 | 257.96 | radiation | 10 | 1440 | < th | dose independent | rect. | 12 | 10 |
| 99 | 258.15 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 8 |
| 101 | 258.16 | radiation | 10 | 1440 | < th | dose independent | rect. | 12 | 16 |
| 108 | 258.23 | temperature | 20 | 10 | < th | dose independent | rect. | 16 | 14 |
| 134 | 258.48 | temperature | 20 | 10 | < th | dose independent | rect. | 16 | 17 |
| 154 | 258.73 | temperature | 20 | 10 | < th | dose independent | rect. | 14 | 16 |
| 166 | 258.91 | temperature | 20 | 10 | > th | dose independent | rect. | 13 | 23 |
| 169 | 258.94 | temperature | 20 | 10 | < th | dose independent | rect. | 14 | 19 |
| 191 | 259.28 | radiation | 10 | 1440 | < th | dose independent | rect. | 9 | 13 |
| 192 | 259.28 | radiation | 10 | 1440 | < th | dose independent | rect. | 9 | 15 |
| 210 | 259.42 | radiation | 10 | 1440 | < th | dose independent | rect. | 9 | 19 |
| 212 | 259.43 | radiation | 10 | 720 | < th | dose independent | rect. | 24 | 18 |
| 214 | 259.44 | radiation | 10 | 1440 | < th | dose independent | rect. | 9 | 21 |
| 224 | 259.56 | temperature | 20 | 10 | > th | dose independent | rect. | 6 | 23 |
| 226 | 259.57 | temperature | 20 | 10 | < th | dose independent | rect. | 12 | 18 |
| 239 | 259.70 | temperature | 20 | 10 | < th | dose independent | rect. | 12 | 21 |
| 249 | 259.77 | radiation | 20 | 720 | < th | dose dependent | rect. | 24 | 18 |
| 254 | 259.84 | temperature | 20 | 90 | < th | dose independent | rect. | 23 | 2 |
| 255 | 259.85 | temperature | 20 | 10 | > th | dose independent | rect. | 15 | 21 |
| 265 | 259.93 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 3 |
| 276 | 260.06 | temperature | 20 | 10 | > th | dose independent | no | NA | NA |
| 324 | 260.64 | radiation | 30 | 1440 | < th | dose independent | rect. | 14 | 18 |
| 333 | 260.80 | radiation | 10 | 720 | < th | dose independent | rect. | 6 | 12 |
| 334 | 260.80 | radiation | 40 | 1440 | < th | dose independent | rect. | 12 | 21 |
| 342 | 260.88 | temperature | 20 | 10 | < th | dose independent | rect. | 18 | 22 |
| 344 | 260.89 | temperature | 20 | 10 | > th | dose independent | rect. | 11 | 23 |
| 353 | 261.02 | humidity | 90 | 14400 | > th | dose independent | rect. | 2 | 6 |
| 358 | 261.06 | humidity | 90 | 14400 | > th | dose dependent | sin | 3 | NA |
| 402 | 261.34 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 21 | 2 |
| 418 | 261.43 | temperature | 20 | 10 | > th | dose independent | rect. | 17 | 23 |
| 448 | 261.70 | temperature | 20 | 10 | < th | dose independent | rect. | 10 | 23 |
| 461 | 261.75 | radiation | 30 | 1440 | < th | dose independent | rect. | 14 | 2 |
| 469 | 261.77 | temperature | 20 | 10 | < th | dose independent | rect. | 10 | 20 |
| 500 | 261.90 | temperature | 20 | 10 | < th | dose independent | rect. | 21 | 23 |
| 511 | 261.95 | temperature | 20 | 10 | < th | dose independent | rect. | 7 | 23 |
| 512 | 261.96 | temperature | 20 | 10 | < th | dose independent | no | NA | NA |
| 514 | 261.96 | radiation | 20 | 720 | < th | dose dependent | rect. | 6 | 12 |
| 526 | 262.03 | temperature | 20 | 10 | > th | dose independent | rect. | 1 | 23 |
| 529 | 262.04 | temperature | 20 | 10 | < th | dose independent | rect. | 3 | 23 |
| 537 | 262.06 | temperature | 20 | 90 | < th | dose independent | rect. | 21 | 6 |
| 545 | 262.07 | temperature | 20 | 10 | < th | dose independent | rect. | 5 | 23 |
| 555 | 262.12 | temperature | 20 | 10 | > th | dose independent | rect. | 23 | 23 |
| 570 | 262.19 | radiation | 30 | 1440 | < th | dose independent | rect. | 14 | 8 |
| 575 | 262.22 | radiation | 30 | 1440 | < th | dose independent | rect. | 14 | 10 |
| 590 | 262.29 | temperature | 20 | 10 | < th | dose independent | rect. | 23 | 23 |
| 611 | 262.37 | wind | 9 | 43200 | > th | dose independent | rect. | 16 | 3 |
| 632 | 262.47 | radiation | 30 | 1440 | < th | dose independent | rect. | 14 | 12 |
| 633 | 262.47 | temperature | 20 | 90 | < th | dose independent | rect. | 11 | 20 |
| 641 | 262.50 | radiation | 30 | 1440 | < th | dose independent | rect. | 14 | 14 |
| 648 | 262.54 | atmosphere | 1005 | 10 | > th | dose independent | rect. | 21 | 20 |
| 688 | 262.71 | radiation | 30 | 1440 | > th | dose dependent | sin | 13 | NA |
| 726 | 262.91 | radiation | 30 | 1440 | > th | dose dependent | rect. | 12 | 21 |
| 729 | 262.92 | temperature | 20 | 90 | < th | dose independent | rect. | 11 | 22 |
| 732 | 262.95 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 21 | 2 |
| 743 | 262.98 | radiation | 1 | 1440 | > th | dose dependent | rect. | 12 | 20 |
| 744 | 262.99 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 21 | 7 |
| 748 | 263.00 | radiation | 40 | 720 | < th | dose dependent | rect. | 6 | 13 |
| 752 | 263.01 | radiation | 20 | 720 | < th | dose dependent | rect. | 5 | 14 |
| 755 | 263.02 | radiation | 40 | 1440 | < th | dose dependent | rect. | 12 | 20 |
| 776 | 263.14 | radiation | 30 | 1440 | > th | dose dependent | rect. | 14 | 18 |
| 781 | 263.16 | radiation | 40 | 1440 | < th | dose independent | sin | 14 | NA |
| 795 | 263.19 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 19 | 4 |
| 818 | 263.28 | humidity | 90 | 14400 | > th | dose independent | rect. | 2 | 11 |
| 825 | 263.31 | radiation | 40 | 1440 | < th | dose independent | rect. | 12 | 10 |
| 831 | 263.32 | radiation | 40 | 1440 | < th | dose independent | rect. | 12 | 12 |
| 846 | 263.37 | radiation | 40 | 1440 | < th | dose independent | rect. | 12 | 4 |
| 850 | 263.39 | radiation | 10 | 1440 | > th | dose dependent | rect. | 14 | 2 |
| 856 | 263.40 | temperature | 20 | 10 | > th | dose independent | rect. | 3 | 23 |
| 864 | 263.42 | radiation | 1 | 1440 | > th | dose dependent | rect. | 14 | 18 |
| 880 | 263.49 | radiation | 40 | 1440 | < th | dose independent | rect. | 12 | 14 |
| 883 | 263.50 | radiation | 40 | 1440 | < th | dose independent | rect. | 12 | 16 |
| 887 | 263.51 | temperature | 20 | 10 | > th | dose independent | rect. | 11 | 18 |
| 931 | 263.61 | temperature | 20 | 270 | > th | dose dependent | rect. | 15 | 9 |
| 942 | 263.64 | radiation | 20 | 4320 | < th | dose independent | rect. | 17 | 5 |
| 953 | 263.66 | radiation | 1 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 955 | 263.67 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 956 | 263.67 | temperature | 20 | 10 | < th | dose independent | rect. | 1 | 23 |
| 962 | 263.71 | radiation | 30 | 1440 | > th | dose dependent | rect. | 14 | 2 |
| 974 | 263.78 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 24 | 2 |
| 985 | 263.81 | radiation | 40 | 1440 | < th | dose dependent | rect. | 14 | 2 |
| 986 | 263.81 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 22 |
| 997 | 263.84 | temperature | 20 | 10 | > th | dose independent | rect. | 19 | 23 |