BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0186100 Os05g0186100|J065011J02
(152 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G16360.2 | chr3:5554351-5555518 FORWARD LENGTH=146 177 3e-45
AT5G39340.1 | chr5:15748941-15750248 FORWARD LENGTH=156 119 9e-28
AT3G29350.1 | chr3:11264379-11265408 REVERSE LENGTH=157 116 4e-27
AT1G03430.1 | chr1:848159-849235 FORWARD LENGTH=158 114 3e-26
AT3G21510.1 | chr3:7578432-7579537 REVERSE LENGTH=155 111 1e-25
AT4G04402.1 | chr4:2164007-2165404 FORWARD LENGTH=168 63 8e-11
AT1G80100.1 | chr1:30133818-30134652 FORWARD LENGTH=155 61 2e-10
AT5G19710.1 | chr5:6664745-6666107 REVERSE LENGTH=115 59 1e-09
>AT3G16360.2 | chr3:5554351-5555518 FORWARD LENGTH=146
Length = 145
Score = 177 bits (448), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 82/142 (57%), Positives = 115/142 (80%), Gaps = 1/142 (0%)
Query: 6 LRRQIIFMKKNLFDQGYLDEQFNQLEELQDESSPNFVEEVAALFFKDSSRLLTNIEQAID 65
++RQ+ +K++LFDQGYLDEQF +LEELQD+++PNFVEEV+AL+FKDS+RL+ NI+QA++
Sbjct: 1 MQRQVALIKQSLFDQGYLDEQFMELEELQDDANPNFVEEVSALYFKDSARLINNIDQALE 60
Query: 66 KYPQDFYRLDSLVQQLKGSGSSSIGALRMKNECSVFKVNCNDRNLEGCRRSLQKMKREHA 125
+ DF RLDS + Q KGS S+SIGA ++K EC+ F+ C N EGC R+ Q++K+EH+
Sbjct: 61 RGSFDFNRLDSYMHQFKGS-STSIGASKVKAECTTFREYCRAGNAEGCLRTFQQLKKEHS 119
Query: 126 TLKQKLESYFQLLRQVGPRDYA 147
TL++KLE YFQL RQ GP++ A
Sbjct: 120 TLRKKLEHYFQLARQAGPKETA 141
>AT5G39340.1 | chr5:15748941-15750248 FORWARD LENGTH=156
Length = 155
Score = 119 bits (297), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 63/139 (45%), Positives = 93/139 (66%), Gaps = 2/139 (1%)
Query: 4 SNLRRQIIFMKKNLFDQGYLDEQFNQLEELQDESSPNFVEEVAALFFKDSSRLLTNIEQA 63
+ L+R+ +L+ QG+LD+QF +L++LQDE SP+FV EV LFF+D +L++N+ +A
Sbjct: 6 AQLQRRFCDFTISLYHQGFLDDQFTELKKLQDECSPDFVAEVVTLFFEDCEKLISNMARA 65
Query: 64 IDKYPQ-DFYRLDSLVQQLKGSGSSSIGALRMKNECSVFKVNCNDRNLEGCRRSLQKMKR 122
+D+ DF + S V QLKGS SSS+GA R+K C K C+ +N EGC R LQ++
Sbjct: 66 LDQTGNVDFKLVGSSVHQLKGS-SSSVGAKRVKGLCVTLKECCDSQNYEGCVRCLQQVDI 124
Query: 123 EHATLKQKLESYFQLLRQV 141
E+ TLK KL+ F L +Q+
Sbjct: 125 EYKTLKAKLQDLFNLEQQI 143
>AT3G29350.1 | chr3:11264379-11265408 REVERSE LENGTH=157
Length = 156
Score = 116 bits (291), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 62/139 (44%), Positives = 93/139 (66%), Gaps = 2/139 (1%)
Query: 4 SNLRRQIIFMKKNLFDQGYLDEQFNQLEELQDESSPNFVEEVAALFFKDSSRLLTNIEQA 63
+ L+RQ +L+ QG+LD+QF +L++LQD+ SP+FV EV +LFF+D +L++N+ +A
Sbjct: 6 AQLQRQFRDYTISLYQQGFLDDQFTELKKLQDDGSPDFVSEVLSLFFEDCVKLISNMARA 65
Query: 64 IDKYPQ-DFYRLDSLVQQLKGSGSSSIGALRMKNECSVFKVNCNDRNLEGCRRSLQKMKR 122
+D DF ++ + V QLKGS SSS+GA R+K C FK C +N EGC R LQ++
Sbjct: 66 LDTTGTVDFSQVGASVHQLKGS-SSSVGAKRVKTLCVSFKECCEAKNYEGCVRCLQQVDI 124
Query: 123 EHATLKQKLESYFQLLRQV 141
E+ LK KL+ F L +Q+
Sbjct: 125 EYKALKTKLQDMFNLEKQI 143
>AT1G03430.1 | chr1:848159-849235 FORWARD LENGTH=158
Length = 157
Score = 114 bits (284), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 63/139 (45%), Positives = 93/139 (66%), Gaps = 2/139 (1%)
Query: 4 SNLRRQIIFMKKNLFDQGYLDEQFNQLEELQDESSPNFVEEVAALFFKDSSRLLTNIEQA 63
+ L+RQ +L+ QG+LD QF++L +LQDE +P+FV EV +LFF D S+L+ + +
Sbjct: 7 AQLQRQFQDYIVSLYQQGFLDNQFSELRKLQDEGTPDFVAEVVSLFFDDCSKLINTMSIS 66
Query: 64 IDKYPQ-DFYRLDSLVQQLKGSGSSSIGALRMKNECSVFKVNCNDRNLEGCRRSLQKMKR 122
+++ DF ++DS V QLKGS SSS+GA R+KN C FK C+ +N EGC R LQ++
Sbjct: 67 LERPDNVDFKQVDSGVHQLKGS-SSSVGARRVKNVCISFKECCDVQNREGCLRCLQQVDY 125
Query: 123 EHATLKQKLESYFQLLRQV 141
E+ LK KL+ F L +Q+
Sbjct: 126 EYKMLKTKLQDLFNLEKQI 144
>AT3G21510.1 | chr3:7578432-7579537 REVERSE LENGTH=155
Length = 154
Score = 111 bits (278), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 63/127 (49%), Positives = 93/127 (73%), Gaps = 1/127 (0%)
Query: 15 KNLFDQGYLDEQFNQLEELQDESSPNFVEEVAALFFKDSSRLLTNIEQAIDKYPQDFYRL 74
K+LF +G LD QF QL++LQDES+P+FV +V LFF+DS R+L ++ ++D+ DF ++
Sbjct: 15 KSLFLEGILDSQFLQLQQLQDESNPDFVSQVVTLFFQDSDRILNDLSLSLDQQVVDFKKV 74
Query: 75 DSLVQQLKGSGSSSIGALRMKNECSVFKVNCNDRNLEGCRRSLQKMKREHATLKQKLESY 134
D V QLKGS SSSIGA R+KN C VF+ C +N+E C R LQ++K+E+ +K +LE+
Sbjct: 75 DPHVHQLKGS-SSSIGAQRVKNACVVFRSFCEQQNVEACHRCLQQVKQEYYLVKNRLETL 133
Query: 135 FQLLRQV 141
F+L +Q+
Sbjct: 134 FKLEQQI 140
>AT4G04402.1 | chr4:2164007-2165404 FORWARD LENGTH=168
Length = 167
Score = 62.8 bits (151), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 77/138 (55%), Gaps = 24/138 (17%)
Query: 21 GYLDEQFNQLEELQDESSPNFVEEVAALFFKDSSRLLTNIEQAIDKYPQ--DFYRL---- 74
G+LD+QF +L++LQD+ SP+FV EV +LFF+D +L++N+ +A+DK DF ++
Sbjct: 24 GFLDDQFTELKKLQDDGSPDFVAEVLSLFFEDCVKLISNMARALDKSTGTVDFGQMKLFS 83
Query: 75 -----DSLVQQLKGS-----GSSSIGALRMKNECSVFKVNCNDRNLEGCR-RSLQKMKRE 123
D+++ + +GS S +I LR+ K L R R LQ++ E
Sbjct: 84 CTLVFDTVLVR-RGSKLCVLASRNIAKLRIT------KGKLVQHRLRTHRLRCLQQVDIE 136
Query: 124 HATLKQKLESYFQLLRQV 141
+ TL KL+ F L +Q+
Sbjct: 137 YKTLTTKLQDMFNLEKQI 154
>AT1G80100.1 | chr1:30133818-30134652 FORWARD LENGTH=155
Length = 154
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/126 (41%), Positives = 76/126 (60%), Gaps = 2/126 (1%)
Query: 16 NLFDQGYLDEQFNQLEELQDESSPNFVEEVAALFFKDSSR-LLTNIEQAIDKYPQDFYRL 74
+LF QG LDEQF QL++LQDE+SPNFV +V ++F +S + L +D+ D+ ++
Sbjct: 19 SLFHQGVLDEQFLQLQQLQDETSPNFVYDVINIYFDESEKLLRNLRLLLMDREFSDYKKI 78
Query: 75 DSLVQQLKGSGSSSIGALRMKNECSVFKVNCNDRNLEGCRRSLQKMKREHATLKQKLESY 134
+ QL GS SSSIGA R++N C F+ N GC R L+ ++ E+ LK +
Sbjct: 79 GLHLNQLVGS-SSSIGARRVRNVCVAFRSASELSNRPGCLRGLEVVEHEYHYLKNMMHEL 137
Query: 135 FQLLRQ 140
FQL +Q
Sbjct: 138 FQLEQQ 143
>AT5G19710.1 | chr5:6664745-6666107 REVERSE LENGTH=115
Length = 114
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 39/62 (62%)
Query: 89 IGALRMKNECSVFKVNCNDRNLEGCRRSLQKMKREHATLKQKLESYFQLLRQVGPRDYAV 148
IGA+++ E N+EG + +L +K+EH+ L+ K E+YFQL+RQ GP D AV
Sbjct: 52 IGAIKVVKELKKANTFLKAGNIEGVKGALPDIKKEHSELRAKFETYFQLMRQAGPTDVAV 111
Query: 149 SS 150
+S
Sbjct: 112 NS 113
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.133 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,094,570
Number of extensions: 118388
Number of successful extensions: 496
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 489
Number of HSP's successfully gapped: 8
Length of query: 152
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 62
Effective length of database: 8,639,129
Effective search space: 535625998
Effective search space used: 535625998
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 107 (45.8 bits)