BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0677000 Os01g0677000|AK106997
(624 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0677000 Galactose oxidase, central domain containing p... 1205 0.0
Os05g0559000 Galactose oxidase, central domain containing p... 840 0.0
Os03g0258900 Galactose oxidase, central domain containing p... 430 e-120
Os11g0169700 Galactose oxidase, central domain containing p... 384 e-106
AK110516 189 4e-48
AK110148 145 6e-35
>Os01g0677000 Galactose oxidase, central domain containing protein
Length = 624
Score = 1205 bits (3118), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 593/624 (95%), Positives = 593/624 (95%)
Query: 1 MWPXXXXXXXXXXXXXXXGEADGSHDVLDIFGTRSESDYYRNAFQGKQGQAVPLPRGGGL 60
MWP GEADGSHDVLDIFGTRSESDYYRNAFQGKQGQAVPLPRGGGL
Sbjct: 1 MWPLLLRAAVVYAALLAAGEADGSHDVLDIFGTRSESDYYRNAFQGKQGQAVPLPRGGGL 60
Query: 61 RREQQEXXXXXXXXXXXXXXXXRSAPSKVALDSLKLPVDTSAGFAGGWNLVSENSGVSAM 120
RREQQE RSAPSKVALDSLKLPVDTSAGFAGGWNLVSENSGVSAM
Sbjct: 61 RREQQELGAAGPGGSGLSKAPPRSAPSKVALDSLKLPVDTSAGFAGGWNLVSENSGVSAM 120
Query: 121 HLVVMQHGKAIMFDTCTTGRSLMRLPPGRCRPDPRSKQPGAMDCWAHAVEFDYNTGALRS 180
HLVVMQHGKAIMFDTCTTGRSLMRLPPGRCRPDPRSKQPGAMDCWAHAVEFDYNTGALRS
Sbjct: 121 HLVVMQHGKAIMFDTCTTGRSLMRLPPGRCRPDPRSKQPGAMDCWAHAVEFDYNTGALRS 180
Query: 181 LKIVTDTWCSSGAFDADGNMVQTGGFFEGDKSVRYLSACGTCDWKEFPKSLADGRWYGTQ 240
LKIVTDTWCSSGAFDADGNMVQTGGFFEGDKSVRYLSACGTCDWKEFPKSLADGRWYGTQ
Sbjct: 181 LKIVTDTWCSSGAFDADGNMVQTGGFFEGDKSVRYLSACGTCDWKEFPKSLADGRWYGTQ 240
Query: 241 LVLPDGSFIVIGGRRAFSYEFVPAAGRANARATPLRLLRDTTDDVENNLYPFVNLLPDGT 300
LVLPDGSFIVIGGRRAFSYEFVPAAGRANARATPLRLLRDTTDDVENNLYPFVNLLPDGT
Sbjct: 241 LVLPDGSFIVIGGRRAFSYEFVPAAGRANARATPLRLLRDTTDDVENNLYPFVNLLPDGT 300
Query: 301 LFIFANDRSIVFNYRTGQVVRELPILPGGSRNYPASAMSTLLPLDLRKGAGLSAEVIICG 360
LFIFANDRSIVFNYRTGQVVRELPILPGGSRNYPASAMSTLLPLDLRKGAGLSAEVIICG
Sbjct: 301 LFIFANDRSIVFNYRTGQVVRELPILPGGSRNYPASAMSTLLPLDLRKGAGLSAEVIICG 360
Query: 361 GATKNAFKLGETSTFPPALRDCARINPSKPGARWALDQMPSGRVMGDVLILPTGDLLMLN 420
GATKNAFKLGETSTFPPALRDCARINPSKPGARWALDQMPSGRVMGDVLILPTGDLLMLN
Sbjct: 361 GATKNAFKLGETSTFPPALRDCARINPSKPGARWALDQMPSGRVMGDVLILPTGDLLMLN 420
Query: 421 GAAKGCSGWGFGRQALLSPVLYSPYLRRGKRFRVLNPSNIPRMYHSTSALLPDATVLVAG 480
GAAKGCSGWGFGRQALLSPVLYSPYLRRGKRFRVLNPSNIPRMYHSTSALLPDATVLVAG
Sbjct: 421 GAAKGCSGWGFGRQALLSPVLYSPYLRRGKRFRVLNPSNIPRMYHSTSALLPDATVLVAG 480
Query: 481 SNTNSAYNFSGVDFPTEVRVERFTPPYLSPQLSPNRPAIDAASVPGDGMRYGARFTFRFT 540
SNTNSAYNFSGVDFPTEVRVERFTPPYLSPQLSPNRPAIDAASVPGDGMRYGARFTFRFT
Sbjct: 481 SNTNSAYNFSGVDFPTEVRVERFTPPYLSPQLSPNRPAIDAASVPGDGMRYGARFTFRFT 540
Query: 541 TPAQGVGQGDFKVTMYAPPFTTHGYSMNQRLLILPVTAFAAQGQRHTVTVDAPPKPELAP 600
TPAQGVGQGDFKVTMYAPPFTTHGYSMNQRLLILPVTAFAAQGQRHTVTVDAPPKPELAP
Sbjct: 541 TPAQGVGQGDFKVTMYAPPFTTHGYSMNQRLLILPVTAFAAQGQRHTVTVDAPPKPELAP 600
Query: 601 PGYYMVYVVAKGVPSKAAWVKMHK 624
PGYYMVYVVAKGVPSKAAWVKMHK
Sbjct: 601 PGYYMVYVVAKGVPSKAAWVKMHK 624
>Os05g0559000 Galactose oxidase, central domain containing protein
Length = 622
Score = 840 bits (2169), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 413/601 (68%), Positives = 468/601 (77%), Gaps = 10/601 (1%)
Query: 26 DVLDIFGTRSESDYYRNAFQGKQGQAVPLPRGGGLRREQQEXXXXXXXXXXXXXXXXRSA 85
D+ IF RS+SDY+ F G GQA P+ EQ+E A
Sbjct: 29 DLFSIFRPRSDSDYF--PFDGSPGQAKRKPK-----IEQEEDGAAPATATGLTKVPPLGA 81
Query: 86 PSKVALDSLKLPVDTSAGFAGGWNLVSENSGVSAMHLVVMQHGKAIMFDTCTTGRSLMRL 145
PSK ALD++ LPVD SAG AG W +VSENSGVSAMHL VM+HGKAIMFDT TTGRSLMRL
Sbjct: 82 PSKAALDTIVLPVDDSAGHAGSWTIVSENSGVSAMHLAVMRHGKAIMFDTSTTGRSLMRL 141
Query: 146 PPGRCRPDPRSKQPGAMDCWAHAVEFDYNTGALRSLKIVTDTWCSSGAFDADGNMVQTGG 205
P CR DPR+K+ G MDCWAHAVEFDY+TGALRSLK TDTWCSSGAFDADGN++QTGG
Sbjct: 142 PMNNCRADPRAKREGTMDCWAHAVEFDYSTGALRSLKTATDTWCSSGAFDADGNLIQTGG 201
Query: 206 FFEGDKSVRYLSACGTCDWKEFPKSLADGRWYGTQLVLPDGSFIVIGGRRAFSYEFVPAA 265
+FEGDK+VR L AC TCDW+E+P S A+GRWY TQ VLPDG FIV GGRRAFSYEFVP
Sbjct: 202 YFEGDKAVRRLDACDTCDWREYPNSFAEGRWYATQQVLPDGRFIVFGGRRAFSYEFVPQP 261
Query: 266 GRANARATPLRLLRDTTDDVENNLYPFVNLLPDGTLFIFANDRSIVFNYRTGQVVRELPI 325
G N ++ LLR+TTDDVENNLYPFVNLLPDG LF+FANDRS+VF++RTG+VVRELP
Sbjct: 262 GMTNGQSIKFPLLRETTDDVENNLYPFVNLLPDGNLFVFANDRSVVFDHRTGKVVRELPK 321
Query: 326 LPGGSRNYPASAMSTLLPLDLR---KGAGLSAEVIICGGATKNAFKLGETSTFPPALRDC 382
L GG RN+PASAMS +LPLDLR +GA EVI+CGGA K AF+LGE +T+ P LRDC
Sbjct: 322 LAGGGRNHPASAMSAMLPLDLRNLTRGADPEPEVIVCGGALKTAFRLGENNTYQPTLRDC 381
Query: 383 ARINPSKPGARWALDQMPSGRVMGDVLILPTGDLLMLNGAAKGCSGWGFGRQALLSPVLY 442
ARIN K A WA++ MP GRVMGD+L+LPTGDLLMLNGAAKG SGWGF RQ +LSP+LY
Sbjct: 382 ARINLGKIDAVWAVEAMPVGRVMGDLLVLPTGDLLMLNGAAKGSSGWGFARQPILSPILY 441
Query: 443 SPYLRRGKRFRVLNPSNIPRMYHSTSALLPDATVLVAGSNTNSAYNFSGVDFPTEVRVER 502
SP G RFR L S + RMYHSTSA+LPDATVLVAG NTN+AYNFSGVDFPTEVRVER
Sbjct: 442 SPRHPEGSRFRPLAASTVARMYHSTSAVLPDATVLVAGGNTNAAYNFSGVDFPTEVRVER 501
Query: 503 FTPPYLSPQLSPNRPAIDAASVPGDGMRYGARFTFRFTTPAQGVGQGDFKVTMYAPPFTT 562
F PPYLS +L+ NR ID ASVP GMRYG +FTFRF TP V GD +VTMYAPPFTT
Sbjct: 502 FAPPYLSRELTGNRAVIDVASVPAGGMRYGTKFTFRFHTPVAAVEWGDVRVTMYAPPFTT 561
Query: 563 HGYSMNQRLLILPVTAFAAQGQRHTVTVDAPPKPELAPPGYYMVYVVAKGVPSKAAWVKM 622
HGYSMNQRLL+LPV F+AQGQ + +TVD P KPELAPPGYY+VYVV+K VPS+AAWVK+
Sbjct: 562 HGYSMNQRLLVLPVAGFSAQGQMYELTVDTPRKPELAPPGYYLVYVVSKDVPSEAAWVKI 621
Query: 623 H 623
Sbjct: 622 Q 622
>Os03g0258900 Galactose oxidase, central domain containing protein
Length = 564
Score = 430 bits (1106), Expect = e-120, Method: Compositional matrix adjust.
Identities = 233/541 (43%), Positives = 320/541 (59%), Gaps = 22/541 (4%)
Query: 101 SAGFAGGWNLVSENSGVSAMHLVVMQHGKAIMFDTCTTGRSLMRLPPGRCRPDPRSKQPG 160
++G G W+++ + GVSAMH+ ++ + + I+FD G S + LP GRCR +PR +
Sbjct: 28 ASGAGGRWDVLQRSIGVSAMHMQLLHNDRVIIFDRTDFGLSNLSLPDGRCRRNPRERVV- 86
Query: 161 AMDCWAHAVEFDYNTGALRSLKIVTDTWCSSGAFDADGNMVQTGGFFEGDKSVRYLSAC- 219
MDC AH+ E+D + R L + TDTWCSSG DG +VQTGG+ +G ++VR ++AC
Sbjct: 87 PMDCTAHSAEYDVASNTFRPLFVFTDTWCSSGTVAPDGTLVQTGGWNDGYRNVRTMAACE 146
Query: 220 ---GTCDWKEFPKSLADGRWYGTQLVLPDGSFIVIGGRRAFSYEFVPAAGRANARATPLR 276
TCDW E +LA RWY T +LPDG ++GGRR F+YEF P A + A L
Sbjct: 147 AGDDTCDWDETQDALAANRWYATNQILPDGRAFIVGGRRQFTYEFYPTADSSGGSAISLP 206
Query: 277 LLRDTTDDVENNLYPFVNLLPDGTLFIFANDRSIVFNYRTGQVVRELPILPGGS-RNYPA 335
L T D ENNLYPFV+L DG LFIFA +R+I+F+Y+ +VVR P L GG RNYP+
Sbjct: 207 FLVQTKDPEENNLYPFVHLNIDGNLFIFAKNRAILFDYKKNKVVRTYPELAGGDPRNYPS 266
Query: 336 SAMSTLLPLDLRKGAGLSAEVIICGGATKNAFKLGETSTFPPALRDCARINPSKPGARWA 395
S S LLPL K + AEV++CGGA ++ + TF AL C RI + W
Sbjct: 267 SGSSVLLPL---KPSPTEAEVLVCGGAPAGSYTSTKDGTFSSALVTCGRIKITDTAPAWV 323
Query: 396 LDQMPSGRVMGDVLILPTG-DLLMLNGAAKGCSGWGFGRQALLSPVLYSPYLRRGKRFRV 454
++ MPS RVMGD+++LP G +++++NGA G +GW + +PV+Y P G RF
Sbjct: 324 IETMPSPRVMGDMILLPNGAEVVIINGAMDGTAGWESAKTPAYAPVIYRPDHSPGDRFEE 383
Query: 455 LNPSNIPRMYHSTSALLPDATVLVAGSNTNSAYNFSGVDFPTEVRVERFTPPYLSPQLSP 514
+ ++I R+YHS++ LL D +LV GSN + YNFS V +PTE+ +E ++P YL P
Sbjct: 384 QSSTDIARLYHSSAVLLRDGRLLVGGSNPHIYYNFSNVQYPTELSLEAYSPEYLDPSNDA 443
Query: 515 NRPAIDAASVPGDGMR--YGARFTFRFTTPAQGVGQ--------GDFKVTMYAPPFTTHG 564
RP I S G + YGA T +F PA + G VTM AP FTTH
Sbjct: 444 LRPTIVDPSPNGAAVSVTYGASLTLQFAVPAARRARGGGGGGGIGLVSVTMVAPSFTTHS 503
Query: 565 YSMNQRLLILPV--TAFAAQGQRHTVTVDAPPKPELAPPGYYMVYVVAKGVPSKAAWVKM 622
++MNQRLL+L TA A+ + +V P LAPPGYYMV+VV +PS+ WV +
Sbjct: 504 FAMNQRLLLLDAVKTAALARASTYQTSVVMPATAALAPPGYYMVFVVNGHIPSEGIWVHI 563
Query: 623 H 623
Sbjct: 564 Q 564
>Os11g0169700 Galactose oxidase, central domain containing protein
Length = 577
Score = 384 bits (985), Expect = e-106, Method: Compositional matrix adjust.
Identities = 228/530 (43%), Positives = 310/530 (58%), Gaps = 18/530 (3%)
Query: 104 FAGGWNLVSENSGVSAMHLVVMQHGKAIMFDTCTTGRSLMRLPP-----GRCRPDPRSKQ 158
AG W L+ +N+GVSAMH+ ++ +MFD +G S + L +
Sbjct: 48 LAGEWQLLHQNTGVSAMHMQLLPGDYVLMFDRTDSGPSNISLDALSPCAAAATTALAAGG 107
Query: 159 PGAMDCWAHAVEFDYNTGALRSLKIVTDTWCSSGAFDADGNMVQTGGFFEGDKSVRYLSA 218
GA+DC AH+V D + ALR + T+ WCSS A +G ++QTGGF GD+ R S
Sbjct: 108 GGAVDCTAHSVLLDLRSNALRPYPLATNPWCSSAALLPNGTLLQTGGFSNGDRIARLFSP 167
Query: 219 CGTCDWKEFPKSLADGRWYGTQLVLPDGSFIVIGGRRAFSYEFVPAAGRANARATPLRLL 278
+ W + P LA RWY T ++L DG +++GGRR F++EF P + T L
Sbjct: 168 --STGWVDLPSFLAVRRWYATDILLADGRVLILGGRRQFNFEFFPHDDAPAPQPTLFPFL 225
Query: 279 RDTTD-DVENNLYPFVNLLPDGTLFIFANDRSIVFNYRTGQVVRELPILPGG-SRNYPAS 336
+TTD D E+NLYPF++LLPD T+F+FANDR++VF+ +R LP +PGG RNYP+S
Sbjct: 226 EETTDMDAEDNLYPFLHLLPDATVFVFANDRAVVFDPYNRAPLRRLPAIPGGVPRNYPSS 285
Query: 337 AMSTLLPLDLRKGAGLSAEVIICGGATKNAFKLG-ETSTFPPALRDCARINPSKPGARWA 395
S LLPL R + AEV++CGGA + A++L TF PA R C RI P+ WA
Sbjct: 286 GSSVLLPL--RPDSPSHAEVLVCGGAPRGAYRLALRNGTFAPADRTCGRIAPTDANPVWA 343
Query: 396 LDQMPSGRVMGDVLILPTGDLLMLNGAAKGCSGWGFGRQALLSPVLYSPYLRRGKRFRVL 455
+++MP R MGD+++LPTGD+L++NGAA G +GW GR+ + PVLY P ++ G RF VL
Sbjct: 344 MEEMPLPRAMGDMVLLPTGDVLIVNGAAAGTAGWELGREPVTYPVLYKPDMQLGARFEVL 403
Query: 456 NPSNIPRMYHSTSALLPDATVLVAGSNTNSAYNFSGVDFPTEVRVERFTPPYLSPQLSPN 515
S IPRMYHS++ L VLV GSN + Y F V +PTE+ +E F PPY +L
Sbjct: 404 AASTIPRMYHSSATLDTLGRVLVGGSNPHVGYVFDNVTYPTELSLEAFLPPYFDARLDGV 463
Query: 516 RPAIDAASVPGDGMRYGARFTFRFTTPAQGVGQG--DFKVTMYAPPFTTHGYSMNQRLLI 573
RP + AA + YG RF P V G + +V AP F TH + MNQR++
Sbjct: 464 RPRLVAAP---SEVGYGEAAAVRFEVPGGAVSGGPEEVRVAAVAPAFATHSFGMNQRVVS 520
Query: 574 LPVTAFAAQGQ-RHTVTVDAPPKPELAPPGYYMVYVVAKGVPSKAAWVKM 622
L V A + V APP P +APPGYY+ +V+ GVPS AAWV+M
Sbjct: 521 LAVGTVAQLAAGLYEAQVAAPPSPSVAPPGYYLWFVLHAGVPSTAAWVRM 570
>AK110516
Length = 1175
Score = 189 bits (481), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 153/473 (32%), Positives = 230/473 (48%), Gaps = 51/473 (10%)
Query: 168 AVEFDYNTGALRSLK-IVTDTWCSSGAF--DADGNMVQTGGF-FEGDKSVRYLS------ 217
A EFD + + R + I TD +C++G D G V GG+ + VR L+
Sbjct: 687 AFEFDPSDNSFREQQGIKTDIFCAAGLTMPDRAGRQVNIGGWSLDSTFGVRILTPDGSPG 746
Query: 218 ACGTCDWKEFPKS--LADGRWYGTQLVLPDGSFIVIGGRRAFSYEFVPAAGRANARATPL 275
GT W+E + L GRWY T +V+ +GS +++GG+ + VP+ R P+
Sbjct: 747 VPGTSAWQEDVNTIKLQRGRWYPTGMVMANGSMLIVGGQDGSNGAPVPSM-EILPRVGPV 805
Query: 276 RLLRDTTDDVENNLYPFVNLLPDGTLFIFANDRSIVFNYRTGQVVRELPILPG------G 329
+ D NLYPF+ ++P G +FI + + + + RT V+ LP +PG G
Sbjct: 806 YEAQYLRDTDPYNLYPFLAVMPSGGIFIEYYNEARIIDERTLDTVKILPKVPGSVNDPSG 865
Query: 330 SRNYPASAMSTLLPLDLRKGAGLSAEVIICGGATKNAFKLGETSTFPPALRDCARINPSK 389
R YP LLP L EV ICGGA + A + G L +C I P
Sbjct: 866 GRTYPLEGTQVLLPQYYPYSDPL--EVPICGGAAR-APRWG--------LDNCVSIAPDT 914
Query: 390 PGARWALDQMPSGRVMGDVLILPTGDLLMLNGAAKGCSGWGFGRQALLSPVLYSPYLRRG 449
G+ W +++MPS RV+ + LP G L+LNGA G +G+G + VLY +
Sbjct: 915 -GSAWTIERMPSRRVLSCMATLPDGTYLILNGAHIGEAGFGLAEDPNFNAVLYDSRKPKH 973
Query: 450 KRFRVLNPSNIPRMYHSTSALLPDATVLVAGSNTNSAYNFSGVDFPTEVRVERFTPPYLS 509
KR ++ + I RMYHS + LL D VLV+GS+ G +P E R E F PPYL
Sbjct: 974 KRMSIMANTTIARMYHSEAVLLDDGRVLVSGSDPE------GPPYPQEFRYEYFLPPYL- 1026
Query: 510 PQLSPNRPAIDAASVPGDGMRYGARFTFRFTTPAQGVGQGDFKVTMYAPPFTTHGYSMNQ 569
LS +P + D + + A++ F T+ + G KV++ +THG SM
Sbjct: 1027 --LS-GKPKPKFSIAQKDWI-WEAQYAFTLTSTSGGA----IKVSLLGSESSTHGSSMGA 1078
Query: 570 RLLILPVTAFAAQGQRHTVTVDAPPKPELAPPGYYMVYVVAKGVPSKAAWVKM 622
R+L V+ + +V +P P +AP G+Y ++V+ +PS A WV++
Sbjct: 1079 RILFPQVSCSG-----NACSVTSPKGPYVAPAGWYRMFVLDGDMPSMATWVRI 1126
>AK110148
Length = 864
Score = 145 bits (367), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 156/609 (25%), Positives = 243/609 (39%), Gaps = 131/609 (21%)
Query: 108 WNLVSENSGVSAMHLVVMQHGKAIMFDTCTTGRSLMRLPPGRCRPDPRSKQPGAMDCWAH 167
+ +V+ NS SAM L +M + D + RL GR W
Sbjct: 37 YEVVNTNSLASAMMLGLMDEQNVFILDKAE--NNSQRLADGR-------------PVWGS 81
Query: 168 AVEFDYNTGALRSLKIVTDTWCSSGAFDADGNMVQTGGF-------------------FE 208
F + ++ + + T+T+C+SGA +G V GG ++
Sbjct: 82 F--FGLSDNSVTGVSVTTNTFCASGATPGNGTWVVAGGNQAVGYGGAAVPQNLSPYADYD 139
Query: 209 GDKSVRYLSACGTCDWKEFPKS-------LADGRWYGTQLVLPDGSFIVIGGRRAF---- 257
G +++R L G+ W + P + + RWY VL DGS + IGG
Sbjct: 140 GTRAIRLLEP-GSKTWIDSPSTSTAQVNMMQSARWYPGIEVLEDGSVLFIGGAVGGGYIN 198
Query: 258 -----------------SYEFVPAAGRANARATPLRLLRDTTDDVENNLYPFVNLLPDGT 300
+YE+ P+ G T + + +T+ N+YP L+P G
Sbjct: 199 RNTPNLDPFYQGGGSNPTYEYFPSKGNQ----TVSQFMGNTSGL---NMYPHTYLMPSGK 251
Query: 301 LFIFANDRSIVFNYRTGQVVRELPILPGGS-RNYPASAMSTLLPLDLRKGAGLSAEVIIC 359
+F+ AN ++++++ LP +PG R YPASA +LPL + + ++ C
Sbjct: 252 IFMQANFSTVLWDHVNNNETY-LPDMPGRVIRVYPASAAVAMLPLTPQNK--YTPTILFC 308
Query: 360 GGATK------NAFKLGETSTFPPALRDCARINPS------KPGARWALDQ-MPSGRVMG 406
GG+ N G A DC+ I P A++ ++ +P GR MG
Sbjct: 309 GGSVMSDTLWGNYGGPGGDILGITASTDCSSITPEDSQGNQNTAAQYVKEEDLPQGRTMG 368
Query: 407 DVLILPTGDLLMLNGAAKGCSGW------------------GFGRQALLSPVLYSPYLRR 448
+ LP G +++LNGA KG +G+ G + PVLY P +
Sbjct: 369 QFIHLPDGTMVILNGAEKGTAGYTNATYNSAQYNGQAINTEGLAQDPTYVPVLYDPSKPQ 428
Query: 449 GKRFRV--LNPSNIPRMYHSTSALLPDATVLVAGSNTNSAYNF---SGVD---FPTEVRV 500
GKR S I R+YHS++ LLPD +V+VAGSN + +G F T +
Sbjct: 429 GKRLSNAGFGASTIARLYHSSAVLLPDGSVMVAGSNPHQDVTLNMPTGTTPQAFNTTYEI 488
Query: 501 ERFTPPYL-----SPQLSPNRPAIDAASVPGDGMRYGARFTFRFTTPAQGVGQGDFKVTM 555
E++ PPY SPQ P S+ G + F + + K +
Sbjct: 489 EKWYPPYWGQPKPSPQGMP-------TSIQYGGSPFNITVDGSFMGSSANAKAANTKFAI 541
Query: 556 YAPPFTTHGYSMNQRLLILPVTAFAAQGQRHTVTVDAPPKPE----LAPPGYYMVYVVAK 611
P F+TH +M QR + L T + T V+ P + L PG + +V
Sbjct: 542 IRPGFSTHAMNMGQRAVYLDYTYTVSDDASVTYMVNPLPNTKAMNRLVVPGPALFFVTVA 601
Query: 612 GVPSKAAWV 620
GVPS +
Sbjct: 602 GVPSNGKMI 610
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.137 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 23,715,567
Number of extensions: 1098363
Number of successful extensions: 2338
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 2291
Number of HSP's successfully gapped: 6
Length of query: 624
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 517
Effective length of database: 11,448,903
Effective search space: 5919082851
Effective search space used: 5919082851
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 159 (65.9 bits)