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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0169700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Galactose oxidase, central domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.81 (0.0226) R2 : 0.0166
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.132 (0.0475) R2dN8 : 0.0214 R2N8 : 0.0166
σ : 0.425
deviance : 82.83
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
80.36 0.421 2.81 0.109 0.293 -0.248 0.346 -0.205 0.146 0.954 8.541 10 -- --
80.44 0.418 2.81 0.116 0.286 -0.243 0.144 -- 0.151 1.01 8.54 10 -- --
80.51 0.418 2.81 0.113 0.298 -0.252 -- 0.0352 0.147 0.985 8.592 10 -- --
80.51 0.418 2.81 0.11 0.296 -0.251 -- -- 0.147 0.992 8.592 10 -- --
82.24 0.422 2.81 0.105 -- -0.0559 -- 0.0274 0.138 -- 9.3 7 -- --
82.28 0.425 2.81 0.0948 0.0756 -- 0.0276 -- 0.141 5.06 -- -- -- --
82.28 0.425 2.81 0.0949 0.076 -- -- -- 0.14 5.22 -- -- -- --
82.22 0.422 2.81 0.104 -- -0.0592 -- -- 0.147 -- 9.251 8 -- --
80.83 0.419 2.81 -- 0.292 -0.245 -- -- 0.134 1.03 8.54 10 -- --
82.58 0.425 2.81 0.0975 -- -- -- -- 0.142 -- -- -- -- --
82.52 0.425 2.81 -- 0.0776 -- -- -- 0.13 5.17 -- -- -- --
82.51 0.423 2.81 -- -- -0.0533 -- -- 0.142 -- 8.593 8 -- --
82.83 0.425 2.81 -- -- -- -- -- 0.132 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 77.25 atmosphere 1000.0 10 < th dose independent rect. 7 1
9 77.25 atmosphere 1000.0 10 < th dose dependent rect. 7 1
27 77.51 wind 1.0 30 < th dose independent rect. 10 1
28 77.51 temperature 10.0 1440 > th dose independent rect. 11 1
32 77.51 atmosphere 995.0 1440 > th dose independent rect. 11 1
35 77.51 precipitation 0.1 1440 < th dose independent rect. 11 1
36 77.51 temperature 10.0 1440 > th dose independent rect. 12 23
39 77.51 wind 1.0 30 < th dose dependent rect. 10 1
40 77.51 precipitation 0.1 1440 < th dose dependent rect. 11 1
41 77.55 humidity 70.0 30 < th dose independent rect. 10 1
43 77.56 humidity 80.0 30 < th dose dependent rect. 10 1
46 77.64 radiation 40.0 30 < th dose independent rect. 10 1
47 77.64 wind 5.0 30 < th dose dependent rect. 10 1
49 77.66 temperature 25.0 30 > th dose dependent rect. 10 1
54 77.75 humidity 80.0 90 > th dose dependent rect. 22 1
56 77.76 atmosphere 1005.0 30 > th dose dependent rect. 10 1
60 77.82 temperature 30.0 30 < th dose independent rect. 10 1
62 77.84 temperature 25.0 30 > th dose independent rect. 10 1
63 77.85 atmosphere 1005.0 30 > th dose independent rect. 10 1
64 77.85 radiation 40.0 30 < th dose dependent rect. 10 1
65 77.86 humidity 60.0 30 > th dose independent rect. 10 1
66 77.86 radiation 20.0 30 > th dose independent rect. 10 1
70 77.87 temperature 10.0 30 > th dose independent rect. 10 1
75 77.87 atmosphere 995.0 30 > th dose independent rect. 10 1
76 77.87 atmosphere 1015.0 30 < th dose independent rect. 10 1
77 77.87 radiation 1.0 30 > th dose independent rect. 10 1
79 77.87 precipitation 0.1 30 < th dose independent rect. 10 1
80 77.87 temperature 10.0 30 > th dose independent rect. 11 23
81 77.87 precipitation 0.1 30 < th dose dependent rect. 10 1
82 77.89 wind 1.0 30 > th dose independent rect. 10 1
85 77.95 wind 5.0 30 < th dose independent rect. 2 1
87 77.95 temperature 25.0 30 < th dose independent rect. 2 1
88 77.95 wind 5.0 30 < th dose dependent rect. 2 1
91 77.95 humidity 50.0 30 > th dose dependent rect. 2 1
93 77.96 temperature 10.0 30 > th dose independent rect. 2 1
96 77.96 humidity 50.0 30 > th dose independent rect. 2 1
100 77.96 atmosphere 995.0 30 > th dose independent rect. 2 1
102 77.96 atmosphere 1010.0 30 < th dose independent rect. 2 1
104 77.96 radiation 1.0 30 < th dose independent rect. 2 1
109 77.96 precipitation 0.1 30 < th dose independent rect. 2 1
110 77.96 temperature 10.0 30 > th dose independent rect. 3 23
111 77.96 temperature 10.0 30 > th dose dependent rect. 2 1
116 77.96 atmosphere 995.0 30 > th dose dependent rect. 2 1
119 77.96 radiation 1.0 30 < th dose dependent rect. 2 1
124 77.96 precipitation 0.1 30 < th dose dependent rect. 2 1
130 77.98 atmosphere 1015.0 30 < th dose dependent rect. 2 1
133 78.02 temperature 30.0 30 < th dose dependent rect. 2 1
138 78.04 radiation 1.0 30 > th dose dependent rect. 10 1
142 78.08 temperature 20.0 30 < th dose independent rect. 7 1
147 78.08 temperature 20.0 30 < th dose dependent rect. 7 1
152 78.11 wind 1.0 30 > th dose independent rect. 2 1
154 78.12 atmosphere 1010.0 90 < th dose independent rect. 22 1
156 78.12 atmosphere 1015.0 30 < th dose dependent rect. 10 1
198 78.21 radiation 10.0 43200 < th dose dependent rect. 3 1
203 78.23 wind 9.0 1440 < th dose independent rect. 3 1
204 78.23 temperature 10.0 1440 > th dose independent rect. 3 1
207 78.23 temperature 30.0 1440 < th dose independent rect. 3 1
211 78.23 humidity 50.0 1440 > th dose independent rect. 3 1
220 78.23 atmosphere 995.0 1440 > th dose independent rect. 3 1
221 78.23 radiation 1.0 1440 < th dose independent rect. 3 1
241 78.23 temperature 10.0 1440 > th dose independent rect. 4 23
245 78.23 radiation 1.0 1440 < th dose dependent rect. 3 1
262 78.34 humidity 90.0 90 > th dose independent rect. 22 1
264 78.38 atmosphere 1000.0 90 > th dose independent rect. 22 1
269 78.46 humidity 50.0 30 > th dose dependent rect. 10 1
272 78.48 atmosphere 995.0 30 > th dose independent rect. 3 23
274 78.48 radiation 40.0 4320 < th dose dependent rect. 23 1
275 78.49 wind 9.0 1440 < th dose independent rect. 23 1
277 78.49 temperature 10.0 1440 > th dose independent rect. 23 1
280 78.49 temperature 30.0 1440 < th dose independent rect. 23 1
284 78.49 humidity 50.0 1440 > th dose independent rect. 23 1
294 78.49 atmosphere 995.0 1440 > th dose independent rect. 23 1
295 78.49 radiation 1.0 1440 < th dose independent rect. 23 1
316 78.49 temperature 10.0 1440 > th dose independent rect. 24 23
320 78.49 radiation 1.0 1440 < th dose dependent rect. 23 1
335 78.58 temperature 25.0 30 > th dose independent rect. 22 1
337 78.60 humidity 90.0 30 < th dose independent rect. 22 1
339 78.63 temperature 20.0 30 > th dose dependent rect. 22 1
340 78.63 temperature 10.0 90 > th dose dependent rect. 22 1
341 78.63 atmosphere 1005.0 30 > th dose dependent rect. 22 1
348 78.69 wind 1.0 30 > th dose dependent rect. 10 1
361 78.75 wind 3.0 30 < th dose independent rect. 22 1
363 78.75 precipitation 0.1 30 < th dose independent rect. 22 1
365 78.75 precipitation 0.1 30 < th dose dependent rect. 22 1
367 78.78 humidity 90.0 30 < th dose dependent rect. 22 1
368 78.79 wind 1.0 30 > th dose independent rect. 22 1
376 78.80 temperature 10.0 30 > th dose independent rect. 22 1
378 78.80 temperature 30.0 30 < th dose independent rect. 22 1
379 78.80 humidity 50.0 30 > th dose independent rect. 22 1
385 78.80 radiation 1.0 30 < th dose independent rect. 22 1
390 78.80 temperature 10.0 30 > th dose independent rect. 23 23
391 78.80 wind 9.0 30 < th dose dependent rect. 22 1
392 78.80 radiation 1.0 30 < th dose dependent rect. 22 1
398 78.81 precipitation 0.1 90 < th dose independent rect. 23 23
402 78.81 precipitation 0.1 90 < th dose dependent rect. 23 23
437 78.90 wind 9.0 90 < th dose independent rect. 23 23
438 78.90 wind 1.0 30 > th dose dependent rect. 22 1
439 78.91 wind 9.0 30 < th dose independent rect. 11 23
447 78.94 wind 9.0 30 < th dose independent rect. 3 23
451 78.98 humidity 90.0 10 > th dose dependent rect. 24 1
466 79.04 precipitation 0.1 30 < th dose independent rect. 3 23
467 79.04 precipitation 0.1 30 < th dose dependent rect. 3 23
470 79.05 atmosphere 1015.0 30 < th dose dependent rect. 22 1
480 79.09 humidity 70.0 270 > th dose dependent rect. 19 5
482 79.10 humidity 80.0 270 > th dose dependent rect. 7 17
498 79.14 humidity 70.0 30 > th dose dependent rect. 22 5
537 79.20 temperature 30.0 30 < th dose dependent rect. 22 1
540 79.21 humidity 90.0 90 > th dose dependent rect. 16 8
549 79.24 humidity 90.0 270 > th dose independent rect. 7 17
576 79.32 temperature 25.0 270 > th dose dependent rect. 4 1
579 79.32 radiation 20.0 10 < th dose dependent rect. 24 22
584 79.35 atmosphere 1000.0 30 > th dose independent rect. 22 5
585 79.35 radiation 10.0 10 < th dose independent rect. 24 22
594 79.37 precipitation 0.1 30 > th dose independent rect. 23 1
599 79.37 precipitation 0.1 30 > th dose dependent rect. 23 1
603 79.38 radiation 10.0 10 < th dose independent rect. 3 23
607 79.38 radiation 20.0 10 < th dose dependent rect. 3 23
616 79.40 humidity 80.0 270 > th dose independent rect. 19 5
646 79.44 wind 9.0 30 < th dose dependent rect. 7 20
647 79.45 precipitation 0.1 30 < th dose independent rect. 3 4
648 79.45 radiation 40.0 1440 < th dose independent rect. 1 7
649 79.45 precipitation 0.1 30 < th dose dependent rect. 3 4
657 79.46 humidity 80.0 90 > th dose dependent rect. 7 20
659 79.47 atmosphere 1015.0 30 < th dose independent rect. 7 17
672 79.49 wind 7.0 30 < th dose independent rect. 3 4
674 79.49 temperature 10.0 30 > th dose independent rect. 3 4
676 79.49 temperature 30.0 30 < th dose independent rect. 3 4
677 79.49 humidity 50.0 30 > th dose independent rect. 3 4
680 79.49 atmosphere 995.0 30 > th dose independent rect. 3 4
681 79.49 atmosphere 1015.0 30 < th dose independent rect. 3 4
682 79.49 radiation 20.0 30 < th dose independent rect. 3 4
686 79.49 atmosphere 1010.0 30 < th dose independent rect. 22 5
688 79.49 temperature 10.0 30 > th dose independent rect. 7 20
720 79.50 wind 9.0 30 < th dose dependent rect. 3 4
725 79.51 precipitation 0.1 30 < th dose independent rect. 24 7
726 79.51 wind 9.0 30 < th dose independent rect. 7 20
730 79.51 precipitation 0.1 30 < th dose dependent rect. 24 7
737 79.52 temperature 10.0 1440 > th dose independent rect. 1 7
740 79.52 temperature 30.0 1440 < th dose independent rect. 1 7
744 79.52 humidity 50.0 1440 > th dose independent rect. 1 7
749 79.52 atmosphere 995.0 1440 > th dose independent rect. 1 7
750 79.52 temperature 10.0 1440 > th dose independent rect. 8 17
755 79.52 radiation 40.0 30 < th dose dependent rect. 3 4
759 79.53 humidity 50.0 30 > th dose dependent rect. 3 4
766 79.54 wind 9.0 30 < th dose independent rect. 24 7
767 79.54 temperature 10.0 30 > th dose independent rect. 24 7
769 79.54 temperature 30.0 30 < th dose independent rect. 24 7
770 79.54 humidity 50.0 30 > th dose independent rect. 24 7
773 79.54 atmosphere 995.0 30 > th dose independent rect. 24 7
774 79.54 radiation 20.0 30 < th dose independent rect. 24 7
777 79.54 temperature 10.0 30 > th dose independent rect. 7 17
822 79.56 atmosphere 1015.0 30 < th dose independent rect. 24 7
823 79.56 wind 9.0 30 < th dose independent rect. 7 17
837 79.57 precipitation 0.1 30 < th dose independent rect. 3 19
838 79.57 atmosphere 1015.0 10 < th dose independent rect. 24 22
851 79.57 precipitation 0.1 30 < th dose dependent rect. 3 19
871 79.58 radiation 20.0 270 < th dose independent rect. 19 14
873 79.58 radiation 10.0 10 < th dose independent rect. 3 19
951 79.60 atmosphere 1015.0 30 < th dose independent rect. 7 20
956 79.60 wind 5.0 10 > th dose dependent rect. 24 9
971 79.62 temperature 25.0 270 > th dose independent rect. 4 1
990 79.63 precipitation 0.1 1440 > th dose independent rect. 22 1
993 79.63 precipitation 0.1 1440 > th dose dependent rect. 22 1
995 79.63 wind 9.0 30 < th dose dependent rect. 22 5
998 79.63 temperature 10.0 30 > th dose dependent rect. 3 19