FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0559000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Galactose oxidase, central domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.15 (0.0277) R2 : 1.07e-05
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.00406 (0.0583) R2dN8 : 1.38e-05 R2N8 : 1.07e-05
σ : 0.521
deviance : 124.7
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
117.74 0.51 3.16 -0.127 0.076 0.648 -0.493 1.63 0.0392 8.03 23.9 956 -- --
120.51 0.511 3.12 0.121 0.0732 0.451 -0.246 -- 0.102 7.94 25.5 898 -- --
118.08 0.506 3.17 -0.13 0.113 0.822 -- 2.14 0.0212 8.43 22.3 1237 -- --
120.67 0.512 3.12 0.121 0.0757 0.459 -- -- 0.1 8.63 25.49 906 -- --
118.67 0.507 3.17 -0.137 -- 0.813 -- 2.16 0.0226 -- 22.33 1147 -- --
123.64 0.521 3.14 -0.00943 0.131 -- -0.099 -- 0.00243 9.68 -- -- -- --
123.66 0.521 3.14 -0.0126 0.131 -- -- -- 0.00263 10.1 -- -- -- --
120.86 0.512 3.12 0.124 -- 0.482 -- -- 0.109 -- 26.08 777 -- --
120.98 0.512 3.13 -- 0.072 0.407 -- -- 0.0787 9.5 25.5 854 -- --
124.69 0.522 3.15 -0.0143 -- -- -- -- 0.00247 -- -- -- -- --
123.67 0.52 3.14 -- 0.131 -- -- -- 0.00403 10.1 -- -- -- --
121.22 0.513 3.13 -- -- 0.43 -- -- 0.0857 -- 26.1 776 -- --
124.7 0.521 3.15 -- -- -- -- -- 0.00406 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 107.96 atmosphere 1010.0 30 < th dose dependent rect. 2 1
2 108.12 humidity 90.0 10 > th dose independent rect. 2 1
5 108.28 humidity 80.0 30 > th dose dependent rect. 2 1
6 108.31 temperature 20.0 10 > th dose independent rect. 2 1
14 108.50 wind 5.0 30 < th dose independent rect. 2 1
16 108.50 atmosphere 1000.0 30 > th dose independent rect. 2 1
18 108.53 temperature 10.0 30 > th dose independent rect. 2 1
20 108.53 temperature 30.0 30 < th dose independent rect. 2 1
21 108.53 humidity 50.0 30 > th dose independent rect. 2 1
25 108.53 atmosphere 1010.0 30 < th dose independent rect. 2 1
27 108.53 radiation 1.0 30 < th dose independent rect. 2 1
32 108.53 precipitation 0.1 30 < th dose independent rect. 2 1
33 108.53 temperature 10.0 30 > th dose independent rect. 3 23
34 108.53 radiation 1.0 30 < th dose dependent rect. 2 1
39 108.53 precipitation 0.1 30 < th dose dependent rect. 2 1
40 108.56 wind 9.0 30 < th dose dependent rect. 2 1
41 108.56 temperature 30.0 30 < th dose dependent rect. 2 1
45 108.59 wind 1.0 30 > th dose independent rect. 2 1
47 108.60 temperature 10.0 30 > th dose dependent rect. 2 1
52 108.74 atmosphere 995.0 30 > th dose dependent rect. 2 1
94 109.17 radiation 1.0 14400 < th dose dependent rect. 3 1
114 109.66 wind 9.0 1440 < th dose independent rect. 3 1
115 109.66 temperature 10.0 1440 > th dose independent rect. 3 1
118 109.66 temperature 30.0 1440 < th dose independent rect. 3 1
122 109.66 humidity 50.0 1440 > th dose independent rect. 3 1
131 109.66 atmosphere 995.0 1440 > th dose independent rect. 3 1
132 109.66 radiation 1.0 1440 < th dose independent rect. 3 1
152 109.66 temperature 10.0 1440 > th dose independent rect. 4 23
161 109.93 atmosphere 995.0 10 > th dose independent rect. 3 23
165 110.15 humidity 50.0 10 > th dose independent rect. 3 23
169 110.64 precipitation 0.1 30 < th dose independent rect. 3 23
170 110.64 precipitation 0.1 30 < th dose dependent rect. 3 23
182 112.39 atmosphere 1015.0 10 < th dose independent rect. 3 23
187 112.81 wind 9.0 30 < th dose independent rect. 3 23
189 113.05 humidity 50.0 4320 > th dose dependent rect. 4 1
193 113.39 temperature 30.0 30 < th dose independent rect. 3 23
212 114.16 radiation 1.0 90 < th dose independent rect. 8 1
215 114.16 radiation 1.0 90 < th dose dependent rect. 8 1
219 114.18 humidity 90.0 4320 < th dose dependent rect. 3 3
223 114.19 humidity 90.0 4320 < th dose dependent rect. 4 1
245 114.62 atmosphere 1000.0 90 < th dose independent rect. 18 1
249 114.62 atmosphere 1000.0 90 < th dose dependent rect. 18 1
279 115.08 radiation 1.0 1440 < th dose independent rect. 8 1
280 115.08 radiation 1.0 1440 < th dose dependent rect. 8 1
366 115.87 humidity 70.0 90 < th dose independent rect. 18 1
370 115.90 humidity 80.0 4320 < th dose independent rect. 4 1
396 115.92 wind 7.0 43200 > th dose dependent rect. 5 3
412 116.05 wind 1.0 43200 < th dose dependent rect. 7 1
414 116.07 radiation 1.0 1440 > th dose independent rect. 8 2
419 116.12 wind 9.0 43200 > th dose dependent rect. 13 1
456 116.26 wind 9.0 43200 < th dose independent rect. 5 3
462 116.32 temperature 25.0 270 < th dose independent rect. 7 9
472 116.40 radiation 20.0 1440 < th dose independent rect. 5 2
473 116.41 humidity 50.0 43200 > th dose independent rect. 15 1
476 116.42 radiation 20.0 1440 < th dose independent rect. 18 13
483 116.46 wind 7.0 43200 > th dose independent rect. 5 3
495 116.52 temperature 10.0 90 > th dose dependent rect. 3 22
496 116.52 radiation 20.0 10 < th dose dependent rect. 3 23
499 116.54 humidity 60.0 43200 < th dose dependent rect. 10 6
503 116.56 wind 1.0 90 < th dose independent rect. 15 12
539 116.64 humidity 60.0 43200 < th dose dependent rect. 21 19
546 116.65 humidity 60.0 43200 < th dose dependent sin 0 NA
581 116.70 humidity 60.0 43200 < th dose dependent rect. 14 23
594 116.74 humidity 60.0 43200 < th dose dependent rect. 9 12
633 116.76 humidity 60.0 43200 < th dose dependent no NA NA
749 116.82 wind 1.0 43200 < th dose independent rect. 20 1
757 116.83 temperature 25.0 270 < th dose independent rect. 11 5
758 116.83 radiation 20.0 1440 < th dose independent rect. 22 9
771 116.87 humidity 70.0 4320 > th dose independent rect. 20 9
775 116.88 radiation 20.0 1440 < th dose independent rect. 24 7
809 116.93 wind 1.0 14400 > th dose independent rect. 13 16
838 116.97 temperature 25.0 270 > th dose independent rect. 23 4
845 116.98 wind 1.0 14400 > th dose independent rect. 12 20
849 116.99 humidity 50.0 43200 > th dose independent rect. 14 3
862 117.02 humidity 50.0 43200 > th dose independent sin 15 NA
872 117.04 radiation 1.0 1440 < th dose dependent rect. 20 9
875 117.05 humidity 50.0 43200 > th dose independent rect. 14 6
879 117.05 radiation 30.0 14400 < th dose independent rect. 17 9
884 117.05 humidity 50.0 43200 > th dose independent rect. 14 21
890 117.06 humidity 50.0 43200 > th dose independent rect. 14 16
892 117.06 humidity 60.0 43200 < th dose dependent rect. 14 1
941 117.11 wind 1.0 43200 > th dose independent rect. 20 1
948 117.12 temperature 25.0 720 > th dose independent rect. 4 11
965 117.14 humidity 70.0 4320 < th dose dependent rect. 20 11
983 117.16 temperature 25.0 10 < th dose independent rect. 11 6
984 117.16 humidity 70.0 4320 < th dose independent rect. 20 11
988 117.17 radiation 10.0 43200 > th dose independent rect. 16 2