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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0677000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Galactose oxidase, central domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.9 (0.0392) R2 : 0.158
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.23 (0.133) R2dE : 0.164 R2E : 0.148
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.165 (0.0838) R2dN8 : 0.00956 R2N8 : -0.00624
σ : 0.734
deviance : 248.29
__
_____
C
peak time of C : --
E
wheather : atmosphere
threshold : 999
memory length : 6469
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
237 0.723 2.86 0.26 0.282 0.735 0.531 2.68 0.155 13 999.8 6602 -- --
243.24 0.726 2.89 0.149 0.253 1.15 0.566 -- 0.174 13.3 999.6 6581 -- --
236.17 0.716 2.87 0.274 0.281 0.818 -- 2.95 0.151 12.6 998.6 6388 -- --
243.11 0.726 2.89 0.162 0.264 1.21 -- -- 0.188 12.6 998.9 6469 -- --
241.01 0.723 2.87 0.266 -- 0.844 -- 3 0.151 -- 998.4 6381 -- --
285.6 0.792 2.92 0.333 0.286 -- 0.501 -- 0.0535 12.9 -- -- -- --
286.6 0.793 2.92 0.35 0.286 -- -- -- 0.0555 12.4 -- -- -- --
247.82 0.733 2.89 0.135 -- 1.22 -- -- 0.178 -- 998.9 6469 -- --
243.64 0.727 2.89 -- 0.268 1.24 -- -- 0.181 12.4 998.9 6469 -- --
291.72 0.798 2.92 0.34 -- -- -- -- 0.0508 -- -- -- -- --
289.83 0.796 2.93 -- 0.281 -- -- -- 0.0165 12.4 -- -- -- --
248.29 0.734 2.9 -- -- 1.23 -- -- 0.165 -- 999 6469 -- --
294.78 0.801 2.93 -- -- -- -- -- 0.013 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 223.50 wind 9 4320 > th dose dependent rect. 20 1
5 223.61 wind 9 4320 > th dose dependent rect. 20 8
17 224.11 wind 9 4320 > th dose independent rect. 20 1
23 224.58 wind 9 4320 > th dose independent rect. 20 8
25 224.67 wind 7 4320 < th dose independent rect. 19 2
78 226.29 wind 9 4320 < th dose independent rect. 18 8
149 230.93 atmosphere 995 14400 < th dose independent rect. 17 1
150 230.93 atmosphere 995 14400 < th dose dependent rect. 17 1
174 231.20 atmosphere 995 14400 > th dose independent rect. 17 2
246 233.22 atmosphere 995 14400 > th dose independent rect. 8 11
386 235.61 wind 7 4320 < th dose independent rect. 8 1
411 235.84 atmosphere 995 14400 > th dose independent rect. 4 11
440 236.10 atmosphere 995 14400 < th dose dependent sin 0 NA
443 236.13 atmosphere 995 14400 < th dose independent rect. 18 22
468 236.37 atmosphere 995 14400 > th dose independent sin 4 NA
529 236.57 atmosphere 995 14400 < th dose independent sin 3 NA
594 237.03 atmosphere 995 14400 < th dose independent sin 22 NA
634 237.19 radiation 1 14400 < th dose dependent rect. 23 1
635 237.20 atmosphere 995 14400 > th dose independent rect. 4 22
645 237.22 atmosphere 995 14400 > th dose independent rect. 8 18
666 237.22 atmosphere 995 14400 > th dose independent rect. 14 23
669 237.23 atmosphere 995 14400 > th dose independent no NA NA
682 237.23 atmosphere 995 14400 > th dose independent rect. 12 22
714 237.26 atmosphere 995 14400 > th dose independent rect. 12 15
725 237.26 atmosphere 995 14400 > th dose independent rect. 12 18
780 237.43 atmosphere 995 14400 < th dose independent rect. 14 13
795 237.43 atmosphere 995 14400 > th dose independent rect. 14 19
838 237.44 atmosphere 995 14400 < th dose independent no NA NA
913 237.46 atmosphere 995 14400 > th dose independent rect. 14 12