Os03g0258900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Galactose oxidase, central domain containing protein.
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Os03g0258900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Galactose oxidase, central domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 209.85 | 0.681 | 2.87 | -0.199 | 0.197 | 0.392 | -0.53 | 1.15 | 0.119 | 2.81 | 23.6 | 928 | -- | -- |
| 212.93 | 0.68 | 2.83 | 0.221 | 0.184 | 0.42 | -0.782 | -- | 0.241 | 2.41 | 23.78 | 967 | -- | -- |
| 210.71 | 0.676 | 2.88 | -0.238 | 0.193 | 0.389 | -- | 1.3 | 0.104 | 2.69 | 23.47 | 924 | -- | -- |
| 214.68 | 0.682 | 2.83 | 0.252 | 0.198 | 0.449 | -- | -- | 0.254 | 2.44 | 23.8 | 970 | -- | -- |
| 212.85 | 0.679 | 2.88 | -0.24 | -- | 0.357 | -- | 1.29 | 0.0968 | -- | 23.47 | 916 | -- | -- |
| 222.63 | 0.7 | 2.87 | 0.0595 | 0.123 | -- | -0.752 | -- | 0.0496 | 2.52 | -- | -- | -- | -- |
| 224.44 | 0.702 | 2.87 | 0.0786 | 0.142 | -- | -- | -- | 0.0533 | 4.28 | -- | -- | -- | -- |
| 216.11 | 0.685 | 2.83 | 0.279 | -- | 0.476 | -- | -- | 0.252 | -- | 24 | 1475 | -- | -- |
| 216.24 | 0.685 | 2.84 | -- | 0.203 | 0.43 | -- | -- | 0.226 | 2.54 | 23.7 | 976 | -- | -- |
| 225.52 | 0.702 | 2.87 | 0.0843 | -- | -- | -- | -- | 0.0571 | -- | -- | -- | -- | -- |
| 224.6 | 0.701 | 2.87 | -- | 0.143 | -- | -- | -- | 0.0446 | 4.26 | -- | -- | -- | -- |
| 217.97 | 0.688 | 2.83 | -- | -- | 0.401 | -- | -- | 0.214 | -- | 23.6 | 1510 | -- | -- |
| 225.71 | 0.701 | 2.87 | -- | -- | -- | -- | -- | 0.0477 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 195.24 | wind | 1.0 | 10 | < th | dose independent | rect. | 9 | 1 |
| 3 | 195.26 | wind | 1.0 | 10 | < th | dose dependent | rect. | 9 | 1 |
| 5 | 196.40 | wind | 7.0 | 90 | > th | dose independent | rect. | 1 | 8 |
| 6 | 196.58 | wind | 7.0 | 90 | > th | dose dependent | rect. | 1 | 8 |
| 7 | 197.83 | wind | 5.0 | 90 | > th | dose dependent | rect. | 2 | 1 |
| 8 | 198.51 | wind | 5.0 | 90 | > th | dose independent | rect. | 2 | 1 |
| 10 | 198.85 | wind | 5.0 | 270 | > th | dose dependent | rect. | 23 | 3 |
| 11 | 198.88 | wind | 7.0 | 270 | > th | dose independent | rect. | 23 | 3 |
| 14 | 199.22 | wind | 7.0 | 270 | > th | dose independent | rect. | 24 | 1 |
| 18 | 199.59 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 17 | 1 |
| 28 | 200.54 | wind | 7.0 | 270 | > th | dose independent | rect. | 22 | 5 |
| 32 | 200.73 | wind | 7.0 | 270 | > th | dose dependent | rect. | 22 | 6 |
| 38 | 200.94 | wind | 1.0 | 90 | < th | dose dependent | rect. | 9 | 1 |
| 42 | 201.48 | wind | 7.0 | 270 | > th | dose independent | rect. | 22 | 11 |
| 52 | 201.81 | wind | 7.0 | 30 | > th | dose independent | rect. | 17 | 1 |
| 54 | 201.87 | wind | 7.0 | 270 | > th | dose dependent | rect. | 22 | 11 |
| 77 | 203.28 | radiation | 10.0 | 10 | < th | dose independent | rect. | 9 | 1 |
| 83 | 203.46 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 16 | 1 |
| 87 | 203.57 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 10 | 1 |
| 161 | 205.43 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 8 | 2 |
| 175 | 205.56 | humidity | 80.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 179 | 205.61 | wind | 3.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 187 | 205.67 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 188 | 205.69 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 193 | 205.75 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 194 | 205.75 | humidity | 80.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 200 | 205.78 | temperature | 20.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 202 | 205.79 | wind | 7.0 | 90 | > th | dose independent | rect. | 17 | 17 |
| 216 | 205.87 | wind | 3.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 222 | 205.90 | temperature | 25.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 228 | 205.94 | temperature | 10.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 231 | 205.94 | humidity | 50.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 235 | 205.94 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 237 | 205.94 | radiation | 1.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 242 | 205.94 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 2 | 1 |
| 243 | 205.94 | temperature | 10.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 244 | 205.94 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 249 | 205.94 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 280 | 206.36 | wind | 7.0 | 30 | > th | dose dependent | rect. | 17 | 1 |
| 294 | 206.45 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 296 | 206.48 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 299 | 206.53 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 9 | 10 |
| 320 | 206.78 | wind | 7.0 | 10 | > th | dose independent | rect. | 2 | 2 |
| 398 | 207.22 | humidity | 90.0 | 90 | < th | dose independent | rect. | 1 | 2 |
| 412 | 207.28 | wind | 7.0 | 720 | < th | dose independent | rect. | 17 | 14 |
| 442 | 207.49 | wind | 7.0 | 4320 | < th | dose independent | rect. | 21 | 4 |
| 452 | 207.58 | wind | 7.0 | 30 | > th | dose independent | rect. | 17 | 12 |
| 471 | 207.69 | wind | 7.0 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 501 | 207.86 | wind | 9.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 502 | 207.86 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 9 | 1 |
| 561 | 207.93 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 18 | 1 |
| 572 | 207.98 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 20 | 6 |
| 642 | 208.29 | wind | 7.0 | 4320 | > th | dose independent | rect. | 21 | 4 |
| 646 | 208.33 | wind | 7.0 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 647 | 208.33 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 648 | 208.34 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 660 | 208.43 | wind | 7.0 | 90 | > th | dose independent | rect. | 7 | 2 |
| 667 | 208.45 | wind | 7.0 | 90 | > th | dose dependent | rect. | 8 | 1 |
| 681 | 208.55 | wind | 7.0 | 1440 | < th | dose independent | rect. | 22 | 11 |
| 693 | 208.56 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 17 | 18 |
| 697 | 208.59 | wind | 7.0 | 720 | < th | dose independent | rect. | 18 | 4 |
| 722 | 208.72 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 16 | 3 |
| 779 | 208.97 | wind | 5.0 | 90 | > th | dose dependent | rect. | 17 | 17 |
| 821 | 209.32 | wind | 7.0 | 720 | < th | dose independent | rect. | 10 | 20 |
| 842 | 209.47 | wind | 7.0 | 720 | < th | dose independent | rect. | 19 | 10 |
| 923 | 209.79 | radiation | 20.0 | 720 | > th | dose independent | rect. | 6 | 1 |
| 938 | 209.79 | wind | 7.0 | 720 | > th | dose independent | rect. | 17 | 17 |
| 946 | 209.83 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 20 | 3 |
| 949 | 209.83 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 20 | 3 |
| 966 | 209.93 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 20 | 3 |
| 973 | 209.95 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 6 | 3 |
| 988 | 210.02 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 9 | 1 |