BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0668100 Os01g0668100|AK105603
(247 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0668100 Similar to Arabinogalactan-like protein 297 5e-81
Os05g0563550 Beta-Ig-H3/fasciclin domain containing protein 197 6e-51
Os05g0563600 Beta-Ig-H3/fasciclin domain containing protein 139 2e-33
Os02g0308400 Beta-Ig-H3/fasciclin domain containing protein 125 3e-29
Os05g0163300 Similar to Arabinogalactan protein-like 102 2e-22
Os09g0482780 Beta-Ig-H3/fasciclin domain containing protein 72 5e-13
Os08g0502400 Beta-Ig-H3/fasciclin domain containing protein 69 2e-12
>Os01g0668100 Similar to Arabinogalactan-like protein
Length = 247
Score = 297 bits (760), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 154/207 (74%), Positives = 154/207 (74%)
Query: 41 VLEKGGQYTTFIRLMKETQQDTQLNSQLNNSFNGNGYTVFAPTDNAFNNLKPGTLNSLTQ 100
VLEKGGQYTTFIRLMKETQQDTQLNSQLNNSFNGNGYTVFAPTDNAFNNLKPGTLNSLTQ
Sbjct: 41 VLEKGGQYTTFIRLMKETQQDTQLNSQLNNSFNGNGYTVFAPTDNAFNNLKPGTLNSLTQ 100
Query: 101 QQQVALVQGHVLPQFYSMDSFQTASNPVRTQASGTDGPYTLXXXXXXXXXXXXXXXXXXX 160
QQQVALVQGHVLPQFYSMDSFQTASNPVRTQASGTDGPYTL
Sbjct: 101 QQQVALVQGHVLPQFYSMDSFQTASNPVRTQASGTDGPYTLNITSTTNNNVNVSTGVVEV 160
Query: 161 XXXXALSAVKPLAVYSVDKVLLPFELFGVXXXXXXXXXXXXXXXXGGSTEAASGPAGAED 220
ALSAVKPLAVYSVDKVLLPFELFGV GGSTEAASGPAGAED
Sbjct: 161 TVTNALSAVKPLAVYSVDKVLLPFELFGVKAPAAAPTASTAKPKKGGSTEAASGPAGAED 220
Query: 221 AEPTGAASARXXXXXXXXXXXXXXCLL 247
AEPTGAASAR CLL
Sbjct: 221 AEPTGAASARAVGWGVAGLAAVVGCLL 247
>Os05g0563550 Beta-Ig-H3/fasciclin domain containing protein
Length = 251
Score = 197 bits (501), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 102/180 (56%), Positives = 119/180 (66%), Gaps = 2/180 (1%)
Query: 41 VLEKGGQYTTFIRLMKETQQDTQLNSQLNNSFNGNGYTVFAPTDNAFNNLKPGTLNSLTQ 100
+LEKGG YTTFIRLMK TQQDTQLNSQLN + G+TVFAPTD AF++LKPGTLNSL+
Sbjct: 47 ILEKGGSYTTFIRLMKSTQQDTQLNSQLNGT--STGFTVFAPTDGAFSSLKPGTLNSLSA 104
Query: 101 QQQVALVQGHVLPQFYSMDSFQTASNPVRTQASGTDGPYTLXXXXXXXXXXXXXXXXXXX 160
Q QV+LVQ H++P+FYSMD+F TASNPVRTQASG DGPYTL
Sbjct: 105 QDQVSLVQAHIVPKFYSMDAFDTASNPVRTQASGGDGPYTLNITATSTNQVNVSTGVVDT 164
Query: 161 XXXXALSAVKPLAVYSVDKVLLPFELFGVXXXXXXXXXXXXXXXXGGSTEAASGPAGAED 220
AL A +PLAVYSVDKVLLP+ LFG G ++ +A PAG+ D
Sbjct: 165 TLGTALRADQPLAVYSVDKVLLPYALFGPKPPPSPPPAPSKKPAKGDTSASAEAPAGSAD 224
>Os05g0563600 Beta-Ig-H3/fasciclin domain containing protein
Length = 272
Score = 139 bits (350), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 77/148 (52%), Positives = 93/148 (62%), Gaps = 3/148 (2%)
Query: 41 VLEKGGQYTTFIRLMKETQQDTQLNSQLNNSFNGNGYTVFAPTDNAFNNLKPGTLNSLTQ 100
VLEK G+YTTF+RL+ E++ DTQ+NSQL +S+NG T+FAPTD AF LKPGTLNSL+
Sbjct: 56 VLEKSGKYTTFLRLLHESRVDTQINSQLMDSYNG--LTMFAPTDAAFAALKPGTLNSLSS 113
Query: 101 QQQVALVQGHVLPQFYSMDSFQTASNPVRTQASGTDGPYTLXXXXXXXXXXXXXXXXXXX 160
Q Q+ L+ VLP+FYS+ T PV TQASG DGPY
Sbjct: 114 QDQIQLMLYCVLPRFYSLAMLTTLGGPVNTQASGADGPYKY-KIKPSNNNVNISTGVNWA 172
Query: 161 XXXXALSAVKPLAVYSVDKVLLPFELFG 188
+S PLAVYSVDKV LP+ELFG
Sbjct: 173 LLSTVVSKDFPLAVYSVDKVPLPYELFG 200
>Os02g0308400 Beta-Ig-H3/fasciclin domain containing protein
Length = 267
Score = 125 bits (314), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 73/148 (49%), Positives = 93/148 (62%), Gaps = 3/148 (2%)
Query: 41 VLEKGGQYTTFIRLMKETQQDTQLNSQLNNSFNGNGYTVFAPTDNAFNNLKPGTLNSLTQ 100
+LEKGGQY T +RL+ T+ QL SQL +++G T FAPTD AF L+PGTLN L+
Sbjct: 41 ILEKGGQYNTLLRLLNATRVGEQLGSQLKTTYDG--LTFFAPTDAAFAALRPGTLNGLSD 98
Query: 101 QQQVALVQGHVLPQFYSMDSFQTASNPVRTQASGTDGPYTLXXXXXXXXXXXXXXXXXXX 160
Q+QV LV HVLP++Y++ +FQTASNP+RTQA+G G YT+
Sbjct: 99 QEQVQLVLYHVLPRYYTLATFQTASNPLRTQATGPAGVYTVNVTTTTGQSLVNVSTGVAA 158
Query: 161 X-XXXALSAVKPLAVYSVDKVLLPFELF 187
LSA PLAVYSVD VLLP ++F
Sbjct: 159 VPLGTTLSADFPLAVYSVDGVLLPEQMF 186
>Os05g0163300 Similar to Arabinogalactan protein-like
Length = 275
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 81/150 (54%), Gaps = 3/150 (2%)
Query: 41 VLEKGGQYTTFIRLMKETQQDTQLNSQLN-NSFNGNGYTVFAPTDNAFNNLKPGTLNSLT 99
+L K GQ+T F++L++ TQ Q+N+Q+ + + G TVFAP DNAF L GTLN L+
Sbjct: 57 ILTKAGQFTKFLQLLQSTQAGEQINNQIKGKASSSGGLTVFAPPDNAFAALPTGTLNKLS 116
Query: 100 QQQQVALVQGHVLPQFYSMDSFQTASNPVRTQASGT-DGPYTLXXXXXXXXXXXXXXXXX 158
QQ+ +LVQ HV+ M F T SNP+RTQA T G Y L
Sbjct: 117 DQQKTSLVQFHVVSALLPMAQFDTVSNPLRTQAGETAAGKYPLNVTAEGSRVNISTGVVN 176
Query: 159 XXXXXXALSAVKPLAVYSVDKVLLPFELFG 188
S + L VY VDKVLLP+ L+G
Sbjct: 177 ATVDNTLYSGDR-LVVYQVDKVLLPWALYG 205
>Os09g0482780 Beta-Ig-H3/fasciclin domain containing protein
Length = 240
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 73/150 (48%), Gaps = 8/150 (5%)
Query: 41 VLEKGGQYTTFIRLMKETQQDTQLNSQLNNSFNGNGYTVFAPTDNAFNNLKPGTLNSLTQ 100
+L G + TF+ +++T SQ N + G T+F P D+AF +K T ++LT
Sbjct: 71 LLSVAGPFHTFLNYLEKTNVIETFQSQANKT--KEGVTIFVPKDSAFAAIKQSTFSNLTG 128
Query: 101 QQQVALVQGHVLPQFYSMDSFQTAS--NPVRTQASGTDGPYTLXXXXXXXXXXXXXXXXX 158
Q L+ H P+FYS+ F+ S NPV T A PYTL
Sbjct: 129 DQLKTLLLYHAFPKFYSLAEFKNLSELNPVNTFAG---APYTL-NLTDDMGTISVQSMWS 184
Query: 159 XXXXXXALSAVKPLAVYSVDKVLLPFELFG 188
++ A +P+AVY+++KVLLP ++F
Sbjct: 185 RPKISSSVYATRPVAVYALNKVLLPMQIFS 214
>Os08g0502400 Beta-Ig-H3/fasciclin domain containing protein
Length = 274
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 70/150 (46%), Gaps = 9/150 (6%)
Query: 41 VLEKGGQYTTFIRLMKETQQDTQLNSQLNNSFNGNGYTVFAPTDNAFNNLKPGTLNSLTQ 100
+L G + TF+ L+++T SQ N S +G TVF P D AF +L +LT
Sbjct: 57 LLSVAGPFHTFLDLLEKTDVLRTFQSQANGS--KDGITVFVPKDAAFASLARSATANLTS 114
Query: 101 QQQVALVQGHVLPQFYSMDSFQT---ASNPVRTQASGTDGPYTLXXXXXXXXXXXXXXXX 157
Q +L H LP++YS+ F A++PV T A G YT+
Sbjct: 115 DQLKSLALYHALPRYYSLAEFNRLGGAASPVPTLAGGE---YTVNVTDDMGTVHVGSMWS 171
Query: 158 XXXXXXXALSAVKPLAVYSVDKVLLPFELF 187
S +P+AVY VD+VLLP ++F
Sbjct: 172 NPKISSSVYS-TRPVAVYEVDRVLLPMQIF 200
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.128 0.360
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,950,324
Number of extensions: 147975
Number of successful extensions: 353
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 345
Number of HSP's successfully gapped: 7
Length of query: 247
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 149
Effective length of database: 11,918,829
Effective search space: 1775905521
Effective search space used: 1775905521
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 155 (64.3 bits)