BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0658900 Os01g0658900|U42208
(360 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0658900 OSBZ8 699 0.0
Os05g0569300 Similar to G-box binding factor 1 366 e-101
Os02g0128200 Similar to Transcription factor HBP-1a (Histon... 70 2e-12
Os12g0233800 Similar to DNA-binding factor of bZIP class 66 3e-11
>Os01g0658900 OSBZ8
Length = 360
Score = 699 bits (1805), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/360 (95%), Positives = 345/360 (95%)
Query: 1 MGNDEAVVTQKMGKAPSPPKDHPALSPYLDWSNMQAYYGPGILPPTFFSPGIAAGHTPPP 60
MGNDEAVVTQKMGKAPSPPKDHPALSPYLDWSNMQAYYGPGILPPTFFSPGIAAGHTPPP
Sbjct: 1 MGNDEAVVTQKMGKAPSPPKDHPALSPYLDWSNMQAYYGPGILPPTFFSPGIAAGHTPPP 60
Query: 61 FILGPQPLVPSAFGKPYAAIYPPGGAFSHPFMPLMVSPLSMEPAKSVNSKDSCSNKKMKE 120
FILGPQPLVPSAFGKPYAAIYPPGGAFSHPFMPLMVSPLSMEPAKSVNSKDSCSNKKMKE
Sbjct: 61 FILGPQPLVPSAFGKPYAAIYPPGGAFSHPFMPLMVSPLSMEPAKSVNSKDSCSNKKMKE 120
Query: 121 IDGAAVSTGSGNSEKTSGDCSLEGSSDGNNQKASGTPKKRSIDDRPKSGVETGGALTPND 180
IDGAAVSTGSGNSEKTSGDCSLEGSSDGNNQKASGTPKKRSIDDRPKSGVETGGALTPND
Sbjct: 121 IDGAAVSTGSGNSEKTSGDCSLEGSSDGNNQKASGTPKKRSIDDRPKSGVETGGALTPND 180
Query: 181 RPSEQAALPNLCIPVTAIKPDVSTASDFRVIATPVTEVPTKDDXXXXXXXXXXXXXXXAR 240
RPSEQAALPNLCIPVTAIKPDVSTASDFRVIATPVTEVPTKDD AR
Sbjct: 181 RPSEQAALPNLCIPVTAIKPDVSTASDFRVIATPVTEVPTKDDKESKRERRKQSNRESAR 240
Query: 241 RSRLRKQAETEELARKVELLTAENTSLRREISRLTESSKKLRLENSALMEKLTETGPDEA 300
RSRLRKQAETEELARKVELLTAENTSLRREISRLTESSKKLRLENSALMEKLTETGPDEA
Sbjct: 241 RSRLRKQAETEELARKVELLTAENTSLRREISRLTESSKKLRLENSALMEKLTETGPDEA 300
Query: 301 QEVPPVKTKAQQARGVENFLSMIDKTGTPRSSGHMDHAIATPKLRQLLGSGLATDAVAAR 360
QEVPPVKTKAQQARGVENFLSMIDKTGTPRSSGHMDHAIATPKLRQLLGSGLATDAVAAR
Sbjct: 301 QEVPPVKTKAQQARGVENFLSMIDKTGTPRSSGHMDHAIATPKLRQLLGSGLATDAVAAR 360
>Os05g0569300 Similar to G-box binding factor 1
Length = 380
Score = 366 bits (940), Expect = e-101, Method: Compositional matrix adjust.
Identities = 208/384 (54%), Positives = 249/384 (64%), Gaps = 30/384 (7%)
Query: 1 MGNDEAVVTQKMGKAPSPPKDHPALSPYLDWSNMQAYYGPGILPPTFFSPGIAAGHTPPP 60
M +DEAV TQK+GK SPPKD P P+ DWS +QAYYGPG+LPPT+F+P IA+GH PPP
Sbjct: 1 MAHDEAVATQKIGKTTSPPKDQPTPCPFPDWSAVQAYYGPGVLPPTYFAPAIASGHAPPP 60
Query: 61 FILGPQPLVPSAFGKPYAAIYPPGGAFSHPFMPLMVSPLSMEPAKSVNSKDSCSNKKMKE 120
++ GPQP++P FG PYAA+YP GGA+ HP MP+M +PLSMEPAKS +SK+ SNKK+KE
Sbjct: 61 YMWGPQPIMPPPFGTPYAAMYPHGGAYPHPLMPMMANPLSMEPAKSASSKEKGSNKKLKE 120
Query: 121 IDGAAVSTGSGNSEKT---SGDCSLEGSSDGNNQKASGTPKKRSIDDRPKSGVETGG--- 174
+DGAAVSTGSG+S+KT SGD S EGSSD N+ K T +KR +DD +G ET
Sbjct: 121 VDGAAVSTGSGDSKKTMTSSGDYSAEGSSDVNDLKVGKTGRKRRLDD--GAGAETSAAAK 178
Query: 175 ---ALTPNDRPSEQAALPNLCIPVTAIKPDVSTASDFRVIATPV---------------T 216
AL P+ A LPN P I+P + ++ R + TP+ T
Sbjct: 179 MENALPPSHILGSTAILPNHSFPAQVIRPSATNVANSRALGTPISPPPGVIVPSHTGVST 238
Query: 217 EVPTKDDXXXXXXXXXXXXXXXARRSRLRKQAETEELARKVELLTAENTSLRREISRLTE 276
E+ KD+ ARRSRLRKQAETE+LA +VE LTAENTSLR EISRL+E
Sbjct: 239 ELLIKDERELKREKRKQSNRESARRSRLRKQAETEDLATQVESLTAENTSLRSEISRLSE 298
Query: 277 SSKKLRLENSALMEKLTETGPDEAQEVPPVK-TKAQQARGVENFLSMIDKTGTPRSSGHM 335
SS+KLRLENSALM KL + E K T A R VENFLSMID T S H
Sbjct: 299 SSEKLRLENSALMGKLKDPAASTQAETSLQKTTTASSPRVVENFLSMIDNTNK-TSVRHT 357
Query: 336 DHAIATPKLRQLLGSGLATDAVAA 359
+H A PKLRQLLGSG ATD VAA
Sbjct: 358 EH--AEPKLRQLLGSGPATDVVAA 379
>Os02g0128200 Similar to Transcription factor HBP-1a (Histone-specific
transcription factor HBP1)
Length = 347
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 96/321 (29%), Positives = 139/321 (43%), Gaps = 37/321 (11%)
Query: 1 MGNDEAVVTQKMGKAPSPPKDHPALSP------YLDWSNMQAYYGPGILPPTFFSPGIAA 54
MG ++ K KA S P+ PA + Y +W QAY I P FF P +AA
Sbjct: 1 MGTNDPGTPSKATKA-SEPEQSPATTSGTTAPVYPEWPGFQAY--SAIPPHGFFPPPVAA 57
Query: 55 GHTPPPFILGPQPLVPSAFGKPYAAIYPPGGAFSHPFMPLMVSPLSMEPA-KSVNSKDSC 113
P++ G QP+VP P +YPPG ++HP P V P + P + N + +
Sbjct: 58 SPQAHPYMWGAQPMVPPYGTPPPYMMYPPGTVYAHPSTP-GVHPFNHYPMLANGNVETAG 116
Query: 114 SNKKMKEIDG----AAVSTGSGN---SEKTSGDCSLEGSSDGNNQKASGTPKKRSIDDRP 166
+ EI+G S S N S SG S SD N+Q S + + +D
Sbjct: 117 TAPGASEINGKNELGRTSGPSANGITSHSESGSESESEGSDANSQNDSHSKENDVKEDGS 176
Query: 167 KSGVETGGALTPNDR--PSEQAALPNLCIPVTAIKPDVSTASDFRVIA--TPVTEVPTK- 221
+ AL N P++ + P T +++ D+ A +PV + K
Sbjct: 177 SQNGISHTALNQNMSMAPTQTGVVIGGVAPTT----NLNIGMDYWGAAGSSPVPAMHGKA 232
Query: 222 ----------DDXXXXXXXXXXXXXXXARRSRLRKQAETEELARKVELLTAENTSLRREI 271
D+ ARRSRLRKQAE EEL+ + + L AEN+SLR E+
Sbjct: 233 SSGSVRGEQWDERELKKQKRKQSNRESARRSRLRKQAECEELSVRADNLRAENSSLRAEL 292
Query: 272 SRLTESSKKLRLENSALMEKL 292
R+ + + L N++L EKL
Sbjct: 293 ERIKKEYEALLSHNASLKEKL 313
>Os12g0233800 Similar to DNA-binding factor of bZIP class
Length = 390
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 43/56 (76%)
Query: 239 ARRSRLRKQAETEELARKVELLTAENTSLRREISRLTESSKKLRLENSALMEKLTE 294
ARRSRLRKQAE EELA++ E+L ENTSLR E++R+ + +L +NS+L EKL +
Sbjct: 309 ARRSRLRKQAECEELAQRAEVLKQENTSLRDEVNRIRKEYDELLSKNSSLKEKLED 364
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.309 0.128 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,808,255
Number of extensions: 675458
Number of successful extensions: 2444
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 2434
Number of HSP's successfully gapped: 5
Length of query: 360
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 258
Effective length of database: 11,709,973
Effective search space: 3021173034
Effective search space used: 3021173034
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 157 (65.1 bits)