BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0633400 Os01g0633400|AK108988
(407 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0633400 CBS domain containing protein 752 0.0
Os01g0921500 Similar to SNF1-related protein kinase regulat... 116 3e-26
Os04g0382300 Similar to SNF1-related protein kinase regulat... 105 6e-23
Os01g0586600 CBS domain containing protein 87 2e-17
>Os01g0633400 CBS domain containing protein
Length = 407
Score = 752 bits (1941), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/386 (95%), Positives = 368/386 (95%)
Query: 22 EYWSEALKSFLDHIPVSSVNGAIQPSPSPALEIRLDGSVPDAIDSMYRSDVAGAVIVDDV 81
EYWSEALKSFLDHIPVSSVNGAIQPSPSPALEIRLDGSVPDAIDSMYRSDVAGAVIVDDV
Sbjct: 22 EYWSEALKSFLDHIPVSSVNGAIQPSPSPALEIRLDGSVPDAIDSMYRSDVAGAVIVDDV 81
Query: 82 RTSFGKFVDRDIGFVEFPSLVLWAIEEFDKLGSGAGDKNSDFLTSLKQHPQIAETKIAWL 141
RTSFGKFVDRDIGFVEFPSLVLWAIEEFDKLGSGAGDKNSDFLTSLKQHPQIAETKIAWL
Sbjct: 82 RTSFGKFVDRDIGFVEFPSLVLWAIEEFDKLGSGAGDKNSDFLTSLKQHPQIAETKIAWL 141
Query: 142 AKSFLWEPFFPVRSHDTLFHAMLLFSKHRRINVVPVVELMNSSVIGFVTQNAVMEXXXXX 201
AKSFLWEPFFPVRSHDTLFHAMLLFSKHRRINVVPVVELMNSSVIGFVTQNAVME
Sbjct: 142 AKSFLWEPFFPVRSHDTLFHAMLLFSKHRRINVVPVVELMNSSVIGFVTQNAVMELLLSS 201
Query: 202 XGLEWLDKIADKQLSEFRFANTTKPVSVYSDQTLADALHILSKEKIGVAVVDRKTSCLIG 261
GLEWLDKIADKQLSEFRFANTTKPVSVYSDQTLADALHILSKEKIGVAVVDRKTSCLIG
Sbjct: 202 SGLEWLDKIADKQLSEFRFANTTKPVSVYSDQTLADALHILSKEKIGVAVVDRKTSCLIG 261
Query: 262 SIQCXXXXXXXXXXXXFRNRKTLSAEEFVKLKSKDEDISTENSSASGGQNVLSLRTGQRI 321
SIQC FRNRKTLSAEEFVKLKSKDEDISTENSSASGGQNVLSLRTGQRI
Sbjct: 262 SIQCSDLYQLLDDSSLFRNRKTLSAEEFVKLKSKDEDISTENSSASGGQNVLSLRTGQRI 321
Query: 322 TAGLPVTNRKSDTLKQAMEKLTASRSSCSFIVDEHGRVEGVVTARDIISVFSPPCMDSRI 381
TAGLPVTNRKSDTLKQAMEKLTASRSSCSFIVDEHGRVEGVVTARDIISVFSPPCMDSRI
Sbjct: 322 TAGLPVTNRKSDTLKQAMEKLTASRSSCSFIVDEHGRVEGVVTARDIISVFSPPCMDSRI 381
Query: 382 DGGTFFSAALAQTGCRVEHGQMIQNS 407
DGGTFFSAALAQTGCRVEHGQMIQNS
Sbjct: 382 DGGTFFSAALAQTGCRVEHGQMIQNS 407
>Os01g0921500 Similar to SNF1-related protein kinase regulatory gamma subunit 1
(AKIN gamma1) (AKING1)
Length = 435
Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 100/396 (25%), Positives = 170/396 (42%), Gaps = 63/396 (15%)
Query: 28 LKSFLDHIPVSSVNGAIQPSPSPALEIRLDGSVPDAIDSMYRSDVAGAVIVDDVRTSFGK 87
L S D IPV+S + +EI D ++ +A+D + R + A + +
Sbjct: 58 LNSCFDAIPVASFPHTF--DGAQVVEIPSDATLAEAVDILSRHRIITAPVRNVDAPDDAS 115
Query: 88 FVDRDIGFVEFPSLVLWAIEEFDKLGSGAGDKNSDFLTS--------------LKQHPQI 133
++DR IG VEF + +W + + + + A D +D L + Q
Sbjct: 116 WIDRYIGVVEFAGIAVWLLHQSEAAAARADDLGADELAAKLGTVALEGAAAARAPDQQQS 175
Query: 134 AE------------------TKIAWLAKSFLWEPFFPVRSHDTLFHAMLLFSKHRRINVV 175
AE TK+ ++ SF W PF ++S DT +LL SK+R + +
Sbjct: 176 AEGAVAEAFGALPSSDLFNKTKVKDISGSFRWAPFLALQSSDTFLTMLLLLSKYR-MKSL 234
Query: 176 PVVELMNSSVIGFVTQNAVMEXXXXXXGLEWLDKIADKQLSEFRFA--NTTKPVSVYSDQ 233
PVV++ ++ +TQ AV+ GL W + K L+E ++ V V D+
Sbjct: 235 PVVDIGEGTISNVITQAAVVHMLAECAGLHWFEDWGAKSLTELGLPMIRPSRLVKVRHDE 294
Query: 234 TLADALHILSKEKIG-VAVVDRKTSCLIGSIQCXXXXXXXXXXXXFRNRKTLSAEEFVKL 292
A ++ K +G + VVD GSI R+ +TL+A+EF+
Sbjct: 295 PALKAFRLMRKRGVGGIPVVDHAGKP-TGSIMIKDVKHLLASSDANRDYRTLTAQEFIA- 352
Query: 293 KSKDEDISTENSSASGGQNVLSLRTGQRITAGLPVTNRKSDTLKQAMEKLTASRSSCSFI 352
N+ S G+ +++ VT +K +++K+ + KL A + ++
Sbjct: 353 ----------NARQSSGEKQMNI-----------VTCKKEESIKEIIFKLDAEKRQRIYV 391
Query: 353 VDEHGRVEGVVTARDIIS--VFSPPCMDSRIDGGTF 386
VDE G ++G++T RDII+ V+ PP G F
Sbjct: 392 VDEQGNLDGLITLRDIIAKLVYEPPGYFGDFFNGVF 427
>Os04g0382300 Similar to SNF1-related protein kinase regulatory gamma subunit 1
(AKIN gamma1) (AKING1)
Length = 425
Score = 105 bits (262), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 90/389 (23%), Positives = 163/389 (41%), Gaps = 63/389 (16%)
Query: 25 SEALKSFLDHIPVSSVNGAIQPSPSPALEIRLDGSVPDAIDSMYRSDVAGAVIVDDVRTS 84
SE L S + I V+S +P S +EI + S+ D ++ + ++ + A I +
Sbjct: 31 SEKLNSCFEDIAVASFP---RPLGSQVIEIPSNASLADTVEILSKNKILSAPIRNVDAPE 87
Query: 85 FGKFVDRDIGFVEFPSLVLWAIEEFDKLGSGAG--------------------------- 117
++D+ IG VEF + +W + + + +G
Sbjct: 88 DASWIDKYIGIVEFAGIAMWLLYQSEAAANGTAGSAVGSPVANLVSRLGSFTFRRTSSGR 147
Query: 118 -----DKNSD--------FLTSLKQHPQIAETKIAWLAKSFLWEPFFPVRSHDTLFHAML 164
D SD F +L TK+ ++ SF W PF +++ DT +L
Sbjct: 148 VETTTDPESDETASVGGSFFETLTSSEFYKNTKVGDISGSFRWAPFLALQTSDTFLTMLL 207
Query: 165 LFSKHRRINVVPVVELMNSSVIGFVTQNAVMEXXXXXXGLEWLDKIADKQLSEFRFA--N 222
L SK+R + +PVV++ + +TQ++V+ GL W + K+LSE
Sbjct: 208 LLSKYR-MKSLPVVDIGGDKIENIITQSSVVHMLAECVGLPWFESWGTKKLSELGLPLMK 266
Query: 223 TTKPVSVYSDQTLADALHILSKEKIG-VAVVDRKTSCLIGSIQCXXXXXXXXXXXXFRNR 281
K V V DQ + A ++ ++ +G + V+D + IG+I +++
Sbjct: 267 PCKLVKVNEDQPVLKAFQLMREKGVGGLPVMDTSGTKAIGNISIRDVQYLLTAPNIYKDY 326
Query: 282 KTLSAEEFVKLKSKDEDISTENSSASGGQNVLSLRTGQRITAGLPVTNRKSDTLKQAMEK 341
+T++A++F+ + E S G +T R+ D +K + K
Sbjct: 327 RTITAKDFLTAVRQHLQEQHEASPLLGSV----------------ITCRRDDEVKDIILK 370
Query: 342 LTASRSSCSFIVDEHGRVEGVVTARDIIS 370
L + + +++D+ G EGV+T RDIIS
Sbjct: 371 LDSEKIHRIYVIDDKGNTEGVITLRDIIS 399
>Os01g0586600 CBS domain containing protein
Length = 450
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/259 (27%), Positives = 113/259 (43%), Gaps = 24/259 (9%)
Query: 122 DFLTSLKQHPQIAETKIAWLAKSFLWEPFFPVRSHDTLFHAMLLFSKHRRINVVPVVELM 181
DF L Q T + + +S+ W PF P+ ++ +LL SK+R N VPV+E
Sbjct: 186 DFYKVLLQQEPFKSTTVRSIVESYRWSPFVPITLDTSMLTVLLLLSKYRLRN-VPVIEPD 244
Query: 182 NSSVIGFVTQNAVMEXXXXXXGLEWLDKIADKQLSE--FRFANTTKPVSVYSDQTLADAL 239
+ F+TQ V++ G +W D I+ LS+ F + + ++V S + +A
Sbjct: 245 KPIIKNFITQTGVVKGLQQCKGRDWFDYISALPLSDLGLPFMSLDEVITVNSGDLILEAF 304
Query: 240 HILSKEKI-GVAVVDRKTSCLIGSIQCXXXXXXXXXXXXFRNRKTLSAEEFVKLKSKDED 298
+ KI GV VV+ L+GS+ F N + L+ EF+K
Sbjct: 305 KCMKDNKIGGVPVVEGPNKKLVGSVSIRDIRFLLLRPDLFSNFRQLTVMEFMK------- 357
Query: 299 ISTENSSASGGQNVLSLRTGQRITAGLPVTNRKSDTLKQAMEKLTASRSSCSFIVDEHGR 358
T S+ S N L P+T +L ++ + + + ++VD
Sbjct: 358 --TIGSTVSDSGNGL---------VKPPLTCSPDASLGSVIDSIASRITHRIYVVDGDFE 406
Query: 359 VEGVVTARDIIS--VFSPP 375
V GVVT RD+IS ++ PP
Sbjct: 407 VVGVVTLRDVISCFIYEPP 425
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.132 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,938,416
Number of extensions: 450290
Number of successful extensions: 1025
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1018
Number of HSP's successfully gapped: 4
Length of query: 407
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 304
Effective length of database: 11,657,759
Effective search space: 3543958736
Effective search space used: 3543958736
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)