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Os04g0382300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to SNF1-related protein kinase regulatory gamma subunit 1 (AKIN gamma1) (AKING1).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.7 (0.0345) R2 : 0.714
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.07 (0.0951) R2dC : 0.34 R2C : 0.479
β3 : 1.15 (0.0753) R2dE : 0.165 R2E : 0.322
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.663 (0.0726) R2dN8 : 0.0678 R2N8 : 0.0475
σ : 0.648
deviance : 193.43
__
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C
peak time of C : 19.3
E
wheather : radiation
threshold : 19.02
memory length : 4
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
180.91 0.632 10.7 -0.148 2.06 1.16 2.2 -1.29 0.641 19.3 19.03 7 -- --
188.07 0.639 10.7 -0.0592 2.08 1.17 1.63 -- 0.653 19.2 19.98 5 -- --
191.03 0.644 10.7 -0.182 2.08 1.15 -- -0.579 0.642 19.3 20 5 -- --
192.79 0.647 10.7 -0.155 2.07 1.14 -- -- 0.646 19.3 19.02 4 -- --
362.56 0.887 10.6 -0.233 -- 1.67 -- -0.37 0.663 -- 6.806 3 -- --
214.53 0.687 10.7 -0.159 2.73 -- 0.69 -- 0.645 20.9 -- -- -- --
216.12 0.688 10.7 -0.183 2.73 -- -- -- 0.644 20.9 -- -- -- --
361.61 0.886 10.6 -0.216 -- 1.67 -- -- 0.667 -- 6.9 2 -- --
193.43 0.648 10.7 -- 2.07 1.15 -- -- 0.663 19.3 19.02 4 -- --
640.87 1.18 10.6 -0.182 -- -- -- -- 0.625 -- -- -- -- --
217 0.689 10.7 -- 2.73 -- -- -- 0.664 20.9 -- -- -- --
362.82 0.887 10.6 -- -- 1.67 -- -- 0.693 -- 6.72 2 -- --
641.74 1.18 10.6 -- -- -- -- -- 0.645 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 172.90 temperature 20 720 < th dose independent rect. 1 6
12 174.61 temperature 30 720 < th dose dependent rect. 1 6
24 175.59 temperature 20 720 > th dose independent rect. 23 5
28 175.75 temperature 20 720 > th dose independent rect. 23 10
42 176.13 temperature 20 720 < th dose independent rect. 2 1
43 176.23 radiation 20 10 < th dose dependent rect. 21 23
60 176.57 temperature 25 720 < th dose dependent rect. 3 2
70 176.85 humidity 50 10 > th dose dependent rect. 21 23
79 177.14 temperature 20 720 < th dose independent rect. 5 2
113 177.95 temperature 20 720 < th dose independent sin 8 NA
173 179.41 temperature 20 720 > th dose independent sin 10 NA
179 179.48 humidity 60 14400 > th dose independent rect. 21 11
224 180.54 humidity 90 10 < th dose dependent rect. 20 20
230 180.65 radiation 20 10 < th dose dependent rect. 1 23
241 180.90 temperature 15 720 > th dose dependent rect. 24 9
247 181.00 temperature 25 720 < th dose dependent sin 7 NA
283 181.60 temperature 25 270 < th dose independent rect. 7 4
286 181.61 humidity 60 30 > th dose dependent rect. 23 21
288 181.64 radiation 20 10 < th dose dependent rect. 23 23
292 181.73 radiation 20 10 < th dose dependent rect. 6 23
293 181.74 humidity 50 10 > th dose dependent rect. 23 23
304 181.84 radiation 20 10 < th dose dependent rect. 13 23
312 181.97 radiation 20 10 < th dose dependent rect. 11 23
317 182.02 radiation 20 10 < th dose dependent no NA NA
331 182.19 humidity 50 10 > th dose dependent rect. 1 23
340 182.30 radiation 20 10 < th dose dependent rect. 15 23
349 182.48 temperature 15 720 > th dose dependent rect. 23 5
350 182.49 temperature 25 270 < th dose dependent rect. 7 2
351 182.50 humidity 90 10 < th dose dependent rect. 22 18
353 182.51 humidity 90 30 < th dose dependent rect. 20 18
389 182.96 humidity 80 10 > th dose independent rect. 1 19
392 182.98 humidity 90 10 < th dose dependent rect. 20 22
393 183.02 humidity 90 10 < th dose dependent sin 1 NA
430 183.39 humidity 50 10 > th dose dependent rect. 1 19
445 183.54 radiation 1 30 > th dose independent sin 1 NA
464 183.65 humidity 80 1440 < th dose independent rect. 6 8
480 183.77 humidity 80 1440 < th dose dependent rect. 21 15
483 183.78 humidity 50 10 > th dose dependent rect. 13 23
493 183.90 radiation 30 90 < th dose dependent rect. 11 23
497 183.91 humidity 90 10 < th dose dependent rect. 9 23
508 184.01 radiation 10 10 < th dose dependent rect. 9 23
531 184.21 radiation 20 30 < th dose independent rect. 21 23
533 184.21 humidity 80 1440 < th dose dependent rect. 24 12
536 184.22 humidity 70 1440 > th dose dependent rect. 11 1
539 184.25 humidity 70 14400 < th dose dependent rect. 21 10
546 184.30 humidity 80 10 > th dose independent rect. 7 13
552 184.33 humidity 50 10 > th dose dependent no NA NA
572 184.42 temperature 20 720 > th dose independent rect. 23 18
585 184.46 humidity 50 90 > th dose dependent rect. 12 23
588 184.48 humidity 80 1440 < th dose independent rect. 8 6
590 184.48 humidity 90 10 < th dose dependent rect. 3 13
596 184.50 humidity 90 10 < th dose dependent rect. 5 11
637 184.71 radiation 10 10 < th dose dependent sin 2 NA
641 184.72 radiation 30 90 < th dose dependent sin 4 NA
644 184.73 humidity 80 1440 < th dose dependent rect. 11 1
675 184.88 radiation 1 90 > th dose dependent rect. 15 23
681 184.91 humidity 90 10 < th dose dependent rect. 17 23
707 185.05 humidity 70 1440 > th dose independent rect. 11 1
727 185.16 humidity 80 1440 < th dose dependent sin 7 NA
734 185.19 radiation 20 10 < th dose dependent rect. 23 21
741 185.23 humidity 80 1440 > th dose independent rect. 6 8
768 185.39 humidity 80 1440 > th dose independent rect. 2 12
782 185.43 radiation 1 90 > th dose dependent rect. 17 21
826 185.63 radiation 1 90 > th dose dependent rect. 4 10
847 185.67 humidity 80 1440 < th dose dependent rect. 9 3
857 185.71 humidity 50 10 > th dose dependent sin 5 NA
858 185.71 radiation 1 30 > th dose dependent rect. 9 23
861 185.72 humidity 90 10 < th dose dependent rect. 7 18
867 185.74 radiation 1 90 > th dose dependent sin 4 NA
873 185.75 humidity 90 10 < th dose dependent rect. 7 21
882 185.80 humidity 90 10 < th dose dependent rect. 7 23
893 185.85 humidity 90 10 < th dose dependent rect. 9 16
910 185.92 humidity 90 10 < th dose dependent rect. 5 20
911 185.92 humidity 90 10 < th dose dependent rect. 5 23
912 185.93 humidity 90 10 < th dose dependent rect. 9 19
913 185.93 humidity 90 10 < th dose dependent rect. 3 22
916 185.94 humidity 90 10 < th dose dependent rect. 9 7
944 186.01 temperature 20 720 > th dose independent rect. 5 4
979 186.08 humidity 90 10 < th dose dependent rect. 9 21
994 186.12 humidity 50 1440 > th dose dependent rect. 11 1
999 186.13 humidity 90 10 < th dose dependent no NA NA